compile error for rlabplus

Snowman · 2006-08-06 20:35:36

Sorry, I haven't contacted rlab's author yet. :oops: I'll try to find some time to send him an email tomorrow.

Legout · 2006-08-07 05:52:33

Shame on you!!!!!!!!!!!! :twisted:

Snowman · 2006-08-08 02:05:56

I just realised that rlab 2.2.9.1 is out. I'll try it before contacting the author.

Legout · 2006-08-11 10:52:19

Any updates so far??

Thanks again snowman

Legout · 2006-08-11 11:38:59

btw.

using goto´s blas lib is really recommed. Here´s a little benchmark script for rlab (stolen from the octave mailing list )

% simple_benchmark.m
tic();
n = 200;
A = rand(n,n);
for (i in 1:1000){
  A = A + rand(n,n) * rand(n,n);
}
time=toc()

Running this with the blas lib from aur needs 46s. Running the same with goto-blas lib takes only 16s.

legout

Legout · 2006-08-11 12:05:25

Damm, its me again

I´ve made a PKGBUILD for goto-blas. The problem is (as you know i think), that everybody, who wants to use goto-blas, has to register on their site and has to download manually the sources.

Anyway here´s the PKGBUILD

pkgname=goto-blas
pkgver=1.05
pkgrel=1
pkgdesc="Basic Linear Algebra Subprograms"
url="http://www.tacc.utexas.edu/resources/software/"
license=""
depends=()
makedepends=()
conflicts=('blas')
source=(GotoBLAS-$pkgver.tar.gz)
md5sums=()

build() {
  cd $startdir/src/GotoBLAS
  ./quickbuild.32bit
  LIBGOTO=`find -name libgoto*.so`
  mkdir -p $startdir/pkg/usr/lib
  cp `echo $LIBGOTO` $startdir/pkg/usr/lib
  cd $startdir/pkg/usr/lib
  ln -s `echo $LIBGOTO` ./libblas.so
  ln -s `echo $LIBGOTO` ./libblas.so.3
}

Goto-blas seems to be really interesting for everybody that uses/needs blas.
I´ve tried a simliar benchmark script as above for octave.
Normal blas needs 54s. goto-blas only 30s.[/code]

Legout · 2006-09-01 15:25:40

Hi snowman,

have you already looked at rlab-2.2.9.1?

Legout

Legout · 2006-10-14 09:41:45

It´s me again

rlabplus 2.2.9.2 is out. Maybe you can take a look. thanks

Snowman · 2006-10-18 19:09:38

Same problem with 2.2.9.2.
I just sent an e-mail to the author.

Legout · 2006-10-19 17:09:46

Great!!

Can´t await seeing rlabplus in AUR. :-D

Snowman · 2006-11-16 06:12:01

I haven't receive an answer from the author but rlab2 2.2.9.3 is out and the compilation and make check works with minor patching.

I've added it to AUR: http://aur.archlinux.org/packages.php?d … =1&ID=7562

Legout · 2006-11-16 06:50:55

Yes Baby :twisted:

Legout · 2006-11-16 07:38:05

I´ve got this error:

Warning: Obsolete: arithmetic IF statement at (1)
 In file conmax2.f:6806

              IF(I-IXRCT(2*L-1))900,1200,900                            
                                                                       1
Warning: Obsolete: arithmetic IF statement at (1)
 In file conmax2.f:6810

            IF(JSTRT)1030,1030,1070                                     
                                                                       1
Warning: Obsolete: arithmetic IF statement at (1)
 In file conmax2.f:6813

 1070       IF(AA-AMAX)1200,1200,1100                                   
                                                                       1
Warning: Obsolete: arithmetic IF statement at (1)
 In file conmax2.f:6821

        IF(AMAX-TOLE)2000,1400,1400                                     
                                                                       1
Warning: Obsolete: arithmetic IF statement at (1)
 In file conmax2.f:6832

            IF(J-IXRCT(2*L))1500,1800,1500                              
                                                                       1
Warning: Obsolete: arithmetic IF statement at (1)
 In file conmax2.f:6843

              IF(I-IXRCT(2*L-1))1600,1700,1600                          
                                                                       1
Warning: Obsolete: arithmetic IF statement at (1)
 In file conmax2.f:6855

 2000 IF(NRESL)100,100,2100                                             
                                                                       1
Warning: Obsolete: arithmetic IF statement at (1)
 In file conmax2.f:6873

            IF(I-IXRCT(2*L-1))2200,2300,2200                            
                                                                       1
Warning: Obsolete: arithmetic IF statement at (1)
 In file conmax2.f:6876

          IF(ITRCT)2280,2280,2220                                       
                                                                       1
Warning: Obsolete: arithmetic IF statement at (1)
 In file conmax2.f:6877

 2220     IF(K-NRESL)2240,2300,2300                                     
                                                                       1
Warning: Obsolete: arithmetic IF statement at (1)
 In file conmax2.f:6883

            IF(I-IXRCT(2*L-1))2260,2280,2260                            
                                                                       1
Warning: Obsolete: arithmetic IF statement at (1)
 In file conmax2.f:6896

      IF(ITRCT)2900,2900,2500                                           
                                                                       1
Warning: Obsolete: arithmetic IF statement at (1)
 In file conmax2.f:6899

          IF(I-IXRCT(2*L-1))2600,2700,2600                              
                                                                       1
Warning: Obsolete: arithmetic IF statement at (1)
 In file conmax2.f:6920

        IF(K-1)3400,3400,3300                                           
                                                                       1
Warning: Obsolete: arithmetic IF statement at (1)
 In file conmax2.f:6921

 3300   IF(AA-WRST)3500,3500,3400                                       
                                                                       1
Warning: Obsolete: arithmetic IF statement at (1)
 In file conmax2.f:6925

      IF(ITRCT)3700,3700,3800                                           
                                                                       1
Warning: Obsolete: arithmetic IF statement at (1)
 In file conmax2.f:6928

 3800 IF(WRST-WRSTO)4100,4100,3900                                      
                                                                       1
Warning: Obsolete: arithmetic IF statement at (1)
 In file conmax2.f:6937

 4100 IF(ITRCT-ITRLM)4200,100,100                                       
                                                                       1
Warning: Obsolete: arithmetic IF statement at (1)
gfortran -c  811.f
gfortran -c  vode.f
gcc -c -march=i686 -O2 -pipe -DHAVE_CONFIG_H -DASSERT_OFF -I./gc/include getopt.c
gcc -c -march=i686 -O2 -pipe -DHAVE_CONFIG_H -DASSERT_OFF -I./gc/include getopt1.c
gfortran -Wl,-export-dynamic -Wl,-rpath /usr/lib -march=i686 -O2 -pipe -DHAVE_CONFIG_H -DASSERT_OFF -I./gc/include 
                main.o rlab.o lex.yy.o init.o code.o symbol.o list.o listnode.o op.o opapp.o opmat.o complex.o function.o rel.o util.o btree.o mm.o misc.o fpe.o ent.o mathl.o rfileio.o mdr.o class.o diss.o mdc.o mdr_mdc.o mds.o mdr_mds.o rfile.o bltin.o bltin1.o mdrf1.o print.o getline.o mdcf1.o mdsf1.o bltin2.o mdrf2.o ar.o mdcf2.o rfft.o sort.o r_plot.o rstring.o rdl.o odeb.o odesl.o chaos.o btreef1.o msr.o msrf1.o bltin3.o msc.o mscf1.o msrf2.o msrf3.o mscf2.o r_pgplot.o glpk_simplex.o gsl_levinu.o gsl_pdf.o gsl_spline.o gsl_diffint.o gsl_minimize.o gsl_rng.o gsl_stat.o gsl_findroot.o gsl_ndiff_md.o gsl_leastsquares.o gsl_nintegrate.o gsl_nintegrate_lt.o gsl_specfunc.o gsl_odeiv.o mdr_spf1.o claw1.o odr.o pz1rl.o pdecol.o dloess.o sprann.o bl.o lp.o ode.o acdc.o gcvspl.o 510.o claw1rl.o sleign2.o mirkdc.o coldae.o sparskit.o sparse.o  ar1rl.o pzeros.o 688.o 579.o conmax2.o 811.o vode.o  getopt.o getopt1.o   ./gc/.libs/libgc.a -L/usr/lib  -ldl -lc -lutil -L/usr/X11R6/lib/ -lX11 -L./pgplot -lpgplot -lcpgplot   -lpthread -lblas -lgsl -lgslcblas  -lreadline -lncurses -L/usr/lib -ltermcap -lieee -lm -lc  -o rlab ./flibs/fftpack/libfftpack.a ./clibs/glpk/src/libglpk.a ./clibs/superlu/superlu.a ./clibs/umfpack/UMFPACK/Lib/libumfpack.a ./clibs/umfpack/AMD/Lib/libamd.a /usr/lib/libpgplot.a /usr/lib/libcpgplot.a ./flibs/sparskit2/libskit.a ./flibs/clawpack/libclaw.a ./flibs/odrpack/libodr.a ./clibs/cephes/libmd.a ./flibs/loess/libloess.a ./flibs/hompack/libhompack.a ./flibs/contin/libcontin.a ./flibs/odebim/libodebim.a ./flibs/arpack/libarpack.a ./flibs/bacol/libbacol.a ./flibs/minpack/libminpack.a ./flibs/genzpak/libgenzpak.a ./flibs/slatec/libslatec.a ./clibs/sprannlib/lib/libsprann.a ./flibs/lapack/liblapack.a
bltin1.o: In function `Tmpnam':
bltin1.c:(.text+0x9cd): warning: the use of `tmpnam' is dangerous, better use `mkstemp'
time ./rlab -qrl ./test.r
make: time: Command not found
make: *** [check] Error 127

Snowman · 2006-11-16 09:00:21

For some reason, it doesn't use the time command from bash. Either install time package from community or comment out the make check line. I'll need to think which fix will be best for the PKGBUILD.

Legout · 2006-11-16 09:08:18

Installing time from community works. Thanks

Arch Linux

#26 2006-08-06 20:35:36

Re: compile error for rlabplus

#27 2006-08-07 05:52:33

Re: compile error for rlabplus

#28 2006-08-08 02:05:56

Re: compile error for rlabplus

#29 2006-08-11 10:52:19

Re: compile error for rlabplus

#30 2006-08-11 11:38:59

Re: compile error for rlabplus

#31 2006-08-11 12:05:25

Re: compile error for rlabplus

#32 2006-09-01 15:25:40

Re: compile error for rlabplus

#33 2006-10-14 09:41:45

Re: compile error for rlabplus

#34 2006-10-18 19:09:38

Re: compile error for rlabplus

#35 2006-10-19 17:09:46

Re: compile error for rlabplus

#36 2006-11-16 06:12:01

Re: compile error for rlabplus

#37 2006-11-16 06:50:55

Re: compile error for rlabplus

#38 2006-11-16 07:38:05

Re: compile error for rlabplus

#39 2006-11-16 09:00:21

Re: compile error for rlabplus

#40 2006-11-16 09:08:18

Re: compile error for rlabplus

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