You are not logged in.

Pages: 1

#1 2016-07-28 16:30:26

mm___
Member
From: Konstanz, Germany
Registered: 2015-08-03
Posts: 21

[SOLVED] Issues installing silo-4.10.2-5

Hello,

I need the library SILO for compiling a code. For SILO there is an AUR package (https://aur.archlinux.org/packages/silo/) but unfortunately I am not able to build the package.
I obtain the following error:

In file included from /usr/include/c++/6.1.1/tuple:39:0,
                 from /usr/include/c++/6.1.1/bits/stl_map.h:63,
                 from /usr/include/c++/6.1.1/map:61,
                 from rocket.cxx:66:
./array:1:2: error: invalid preprocessing directive #!
 #! /bin/sh
  ^
./array:3:3: error: invalid preprocessing directive #array
 # array - temporary wrapper script for .libs/array
   ^~~~~
./array:4:3: error: invalid preprocessing directive #Generated
 # Generated by ltmain.sh (GNU libtool) 2.2.6b
   ^~~~~~~~~
./array:6:3: error: invalid preprocessing directive #The
 # The array program cannot be directly executed until all the libtool
   ^~~
./array:7:3: error: invalid preprocessing directive #libraries
 # libraries that it depends on are installed.
   ^~~~~~~~~
./array:9:3: error: invalid preprocessing directive #This
 # This wrapper script should never be moved out of the build directory.
   ^~~~
./array:10:3: error: invalid preprocessing directive #If
 # If it is, it will not operate correctly.
   ^~
./array:12:3: error: invalid preprocessing directive #Sed
 # Sed substitution that helps us do robust quoting.  It backslashifies
   ^~~
./array:13:3: error: invalid preprocessing directive #metacharacters
 # metacharacters that are still active within double-quoted strings.
   ^~~~~~~~~~~~~~
./array:17:3: error: invalid preprocessing directive #Be
 # Be Bourne compatible
   ^~
./array:21:5: error: invalid preprocessing directive #Zsh
   # Zsh 3.x and 4.x performs word splitting on ${1+"$@"}, which
     ^~~
./array:22:5: error: invalid preprocessing directive #is
   # is contrary to our usage.  Disable this feature.
     ^~
./array:26:8: error: stray ‘`’ in program
   case `(set -o) 2>/dev/null` in *posix*) set -o posix;; esac
        ^
./array:26:29: error: stray ‘`’ in program
   case `(set -o) 2>/dev/null` in *posix*) set -o posix;; esac
                             ^
./array:28:28: error: stray ‘#’ in program
 BIN_SH=xpg4; export BIN_SH # for Tru64
                            ^
./array:29:29: error: stray ‘#’ in program
 DUALCASE=1; export DUALCASE # for MKS sh
                             ^
./array:31:3: error: invalid preprocessing directive #The
 # The HP-UX ksh and POSIX shell print the target directory to stdout
   ^~~
./array:32:13: error: missing binary operator before token "is"
 # if CDPATH is set.
             ^~
./array:32:0: error: unterminated #if
 # if CDPATH is set.
 
In file included from /usr/include/c++/6.1.1/tuple:39:0,
                 from /usr/include/c++/6.1.1/bits/stl_map.h:63,
                 from /usr/include/c++/6.1.1/map:61,
                 from rocket.cxx:66:
./array:14:1: error: ‘Xsed’ does not name a type
 Xsed='/usr/bin/sed -e 1s/^X//'
 ^~~~
./array:18:66: error: ‘then’ does not name a type
 if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then
                                                                  ^~~~
./array:26:58: error: ‘esac’ does not name a type
   case `(set -o) 2>/dev/null` in *posix*) set -o posix;; esac
                                                          ^~~~
./array:28:21: error: ‘BIN_SH’ does not name a type
 BIN_SH=xpg4; export BIN_SH # for Tru64
                     ^~~~~~
./array:29:20: error: ‘DUALCASE’ does not name a type
 DUALCASE=1; export DUALCASE # for MKS sh
                    ^~~~~~~~
In file included from /usr/include/c++/6.1.1/bits/stl_map.h:63:0,
                 from /usr/include/c++/6.1.1/map:61,
                 from rocket.cxx:66:
/usr/include/c++/6.1.1/tuple:71:33: error: expected ‘)’ before ‘,’ token
       _Head_base(allocator_arg_t, __uses_alloc0)
                                 ^
/usr/include/c++/6.1.1/tuple:75:28: error: expected ‘)’ before ‘,’ token
  _Head_base(allocator_arg_t, __uses_alloc1<_Alloc> __a)
                            ^
/usr/include/c++/6.1.1/tuple:79:28: error: expected ‘)’ before ‘,’ token
  _Head_base(allocator_arg_t, __uses_alloc2<_Alloc> __a)
                            ^
/usr/include/c++/6.1.1/tuple:83:26: error: expected ‘)’ before ‘,’ token
  _Head_base(__uses_alloc0, _UHead&& __uhead)
                          ^
/usr/include/c++/6.1.1/tuple:87:26: error: expected ‘)’ before ‘<’ token
  _Head_base(__uses_alloc1<_Alloc> __a, _UHead&& __uhead)
                          ^
/usr/include/c++/6.1.1/tuple:91:26: error: expected ‘)’ before ‘<’ token
  _Head_base(__uses_alloc2<_Alloc> __a, _UHead&& __uhead)
                          ^
/usr/include/c++/6.1.1/tuple:117:33: error: expected ‘)’ before ‘,’ token
       _Head_base(allocator_arg_t, __uses_alloc0)
                                 ^
/usr/include/c++/6.1.1/tuple:121:28: error: expected ‘)’ before ‘,’ token
  _Head_base(allocator_arg_t, __uses_alloc1<_Alloc> __a)
                            ^
/usr/include/c++/6.1.1/tuple:125:28: error: expected ‘)’ before ‘,’ token
  _Head_base(allocator_arg_t, __uses_alloc2<_Alloc> __a)
                            ^
/usr/include/c++/6.1.1/tuple:129:26: error: expected ‘)’ before ‘,’ token
  _Head_base(__uses_alloc0, _UHead&& __uhead)
                          ^
/usr/include/c++/6.1.1/tuple:133:26: error: expected ‘)’ before ‘<’ token
  _Head_base(__uses_alloc1<_Alloc> __a, _UHead&& __uhead)
                          ^
/usr/include/c++/6.1.1/tuple:138:26: error: expected ‘)’ before ‘<’ token
  _Head_base(__uses_alloc2<_Alloc> __a, _UHead&& __uhead)
                          ^
/usr/include/c++/6.1.1/tuple:237:30: error: expected ‘)’ before ‘__tag’
  _Tuple_impl(allocator_arg_t __tag, const _Alloc& __a)
                              ^~~~~
/usr/include/c++/6.1.1/tuple:242:30: error: expected ‘)’ before ‘__tag’
  _Tuple_impl(allocator_arg_t __tag, const _Alloc& __a,
                              ^~~~~
/usr/include/c++/6.1.1/tuple:250:30: error: expected ‘)’ before ‘__tag’
  _Tuple_impl(allocator_arg_t __tag, const _Alloc& __a,
                              ^~~~~
/usr/include/c++/6.1.1/tuple:257:37: error: expected ‘)’ before ‘__tag’
         _Tuple_impl(allocator_arg_t __tag, const _Alloc& __a,
                                     ^~~~~
/usr/include/c++/6.1.1/tuple:263:30: error: expected ‘)’ before ‘__tag’
  _Tuple_impl(allocator_arg_t __tag, const _Alloc& __a,
                              ^~~~~
/usr/include/c++/6.1.1/tuple:270:30: error: expected ‘)’ before ‘__tag’
  _Tuple_impl(allocator_arg_t __tag, const _Alloc& __a,
                              ^~~~~
/usr/include/c++/6.1.1/tuple:278:30: error: expected ‘)’ before ‘__tag’
  _Tuple_impl(allocator_arg_t __tag, const _Alloc& __a,
                              ^~~~~
/usr/include/c++/6.1.1/tuple:380:30: error: expected ‘)’ before ‘__tag’
  _Tuple_impl(allocator_arg_t __tag, const _Alloc& __a)
                              ^~~~~
/usr/include/c++/6.1.1/tuple:384:30: error: expected ‘)’ before ‘__tag’
  _Tuple_impl(allocator_arg_t __tag, const _Alloc& __a,
                              ^~~~~
/usr/include/c++/6.1.1/tuple:389:30: error: expected ‘)’ before ‘__tag’
  _Tuple_impl(allocator_arg_t __tag, const _Alloc& __a,
                              ^~~~~
/usr/include/c++/6.1.1/tuple:395:37: error: expected ‘)’ before ‘__tag’
         _Tuple_impl(allocator_arg_t __tag, const _Alloc& __a,
                                     ^~~~~
/usr/include/c++/6.1.1/tuple:400:30: error: expected ‘)’ before ‘__tag’
  _Tuple_impl(allocator_arg_t __tag, const _Alloc& __a,
                              ^~~~~
/usr/include/c++/6.1.1/tuple:406:30: error: expected ‘)’ before ‘__tag’
  _Tuple_impl(allocator_arg_t __tag, const _Alloc& __a,
                              ^~~~~
/usr/include/c++/6.1.1/tuple:412:30: error: expected ‘)’ before ‘__tag’
  _Tuple_impl(allocator_arg_t __tag, const _Alloc& __a,
                              ^~~~~
/usr/include/c++/6.1.1/tuple:711:24: error: expected ‘)’ before ‘__tag’
  tuple(allocator_arg_t __tag, const _Alloc& __a)
                        ^~~~~
/usr/include/c++/6.1.1/tuple:721:24: error: expected ‘)’ before ‘__tag’
  tuple(allocator_arg_t __tag, const _Alloc& __a,
                        ^~~~~
/usr/include/c++/6.1.1/tuple:732:33: error: expected ‘)’ before ‘__tag’
  explicit tuple(allocator_arg_t __tag, const _Alloc& __a,
                                 ^~~~~
/usr/include/c++/6.1.1/tuple:742:24: error: expected ‘)’ before ‘__tag’
  tuple(allocator_arg_t __tag, const _Alloc& __a,
                        ^~~~~
/usr/include/c++/6.1.1/tuple:753:33: error: expected ‘)’ before ‘__tag’
  explicit tuple(allocator_arg_t __tag, const _Alloc& __a,
                                 ^~~~~
/usr/include/c++/6.1.1/tuple:759:24: error: expected ‘)’ before ‘__tag’
  tuple(allocator_arg_t __tag, const _Alloc& __a, const tuple& __in)
                        ^~~~~
/usr/include/c++/6.1.1/tuple:763:24: error: expected ‘)’ before ‘__tag’
  tuple(allocator_arg_t __tag, const _Alloc& __a, tuple&& __in)
                        ^~~~~
/usr/include/c++/6.1.1/tuple:772:24: error: expected ‘)’ before ‘__tag’
  tuple(allocator_arg_t __tag, const _Alloc& __a,
                        ^~~~~
/usr/include/c++/6.1.1/tuple:784:33: error: expected ‘)’ before ‘__tag’
  explicit tuple(allocator_arg_t __tag, const _Alloc& __a,
                                 ^~~~~
/usr/include/c++/6.1.1/tuple:796:24: error: expected ‘)’ before ‘__tag’
  tuple(allocator_arg_t __tag, const _Alloc& __a,
                        ^~~~~
/usr/include/c++/6.1.1/tuple:808:33: error: expected ‘)’ before ‘__tag’
  explicit tuple(allocator_arg_t __tag, const _Alloc& __a,
                                 ^~~~~
/usr/include/c++/6.1.1/tuple:1021:24: error: expected ‘)’ before ‘__tag’
  tuple(allocator_arg_t __tag, const _Alloc& __a)
                        ^~~~~
/usr/include/c++/6.1.1/tuple:1032:24: error: expected ‘)’ before ‘__tag’
  tuple(allocator_arg_t __tag, const _Alloc& __a,
                        ^~~~~
/usr/include/c++/6.1.1/tuple:1044:33: error: expected ‘)’ before ‘__tag’
  explicit tuple(allocator_arg_t __tag, const _Alloc& __a,
                                 ^~~~~
/usr/include/c++/6.1.1/tuple:1054:24: error: expected ‘)’ before ‘__tag’
  tuple(allocator_arg_t __tag, const _Alloc& __a, _U1&& __a1, _U2&& __a2)
                        ^~~~~
/usr/include/c++/6.1.1/tuple:1064:33: error: expected ‘)’ before ‘__tag’
  explicit tuple(allocator_arg_t __tag, const _Alloc& __a,
                                 ^~~~~
/usr/include/c++/6.1.1/tuple:1070:24: error: expected ‘)’ before ‘__tag’
  tuple(allocator_arg_t __tag, const _Alloc& __a, const tuple& __in)
                        ^~~~~
/usr/include/c++/6.1.1/tuple:1074:24: error: expected ‘)’ before ‘__tag’
  tuple(allocator_arg_t __tag, const _Alloc& __a, tuple&& __in)
                        ^~~~~
/usr/include/c++/6.1.1/tuple:1083:24: error: expected ‘)’ before ‘__tag’
  tuple(allocator_arg_t __tag, const _Alloc& __a,
                        ^~~~~
/usr/include/c++/6.1.1/tuple:1095:33: error: expected ‘)’ before ‘__tag’
  explicit tuple(allocator_arg_t __tag, const _Alloc& __a,
                                 ^~~~~
/usr/include/c++/6.1.1/tuple:1107:24: error: expected ‘)’ before ‘__tag’
  tuple(allocator_arg_t __tag, const _Alloc& __a, tuple<_U1, _U2>&& __in)
                        ^~~~~
/usr/include/c++/6.1.1/tuple:1117:33: error: expected ‘)’ before ‘__tag’
  explicit tuple(allocator_arg_t __tag, const _Alloc& __a,
                                 ^~~~~
/usr/include/c++/6.1.1/tuple:1128:31: error: expected ‘)’ before ‘__tag’
         tuple(allocator_arg_t __tag, const _Alloc& __a,
                               ^~~~~
/usr/include/c++/6.1.1/tuple:1138:40: error: expected ‘)’ before ‘__tag’
         explicit tuple(allocator_arg_t __tag, const _Alloc& __a,
                                        ^~~~~
/usr/include/c++/6.1.1/tuple:1148:31: error: expected ‘)’ before ‘__tag’
         tuple(allocator_arg_t __tag, const _Alloc& __a, pair<_U1, _U2>&& __in)
                               ^~~~~
/usr/include/c++/6.1.1/tuple:1158:40: error: expected ‘)’ before ‘__tag’
         explicit tuple(allocator_arg_t __tag, const _Alloc& __a,
                                        ^~~~~
rocket.cxx:155:1: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
 };
 ^
rocket.cxx:155:1: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
rocket.cxx:155:1: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
rocket.cxx:155:1: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
rocket.cxx:155:1: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
rocket.cxx: In function ‘int WriteAllFormats(int, char**)’:
rocket.cxx:744:57: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
     char *dirs[] = {".", "../..", ".libs", "../../.libs"};
                                                         ^
rocket.cxx:744:57: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
rocket.cxx:744:57: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
rocket.cxx:744:57: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
make[1]: *** [Makefile:1623: rocket-rocket.o] Error 1
make[1]: Leaving directory '/tmp/yaourt-tmp-mattia/aur-silo/src/silo-4.10.2/tests'
make: *** [Makefile:1777: check-am] Error 2
==> ERROR: A failure occurred in check().
    Aborting...
==> ERROR: Makepkg was unable to build silo.

which should be related to a conflict with the package hdf5-openmpi, which I have installed. In the package details a patch has been added to specifically solve this issue, but I keep getting the error.

Hope you can help me.

Mattia

Last edited by mm___ (2016-07-29 21:52:33)

Offline

#2 2016-07-28 17:19:27

Lone_Wolf
Member
From: Netherlands, Europe
Registered: 2005-10-04
Posts: 11,911

Re: [SOLVED] Issues installing silo-4.10.2-5

no errors here compiling silo 4.10.2-5  against hdf5 or hdf5-openmpi  (tried both).

mm___ ,  something seems to be wrong with your system.
please post the full build output (use a pastebin client,check wiki) including the exact comand you use to build silo

Disliking systemd intensely, but not satisfied with alternatives so focusing on taming systemd.


(A works at time B)  && (time C > time B ) ≠  (A works at time C)

Offline

#3 2016-07-29 19:10:46

mm___
Member
From: Konstanz, Germany
Registered: 2015-08-03
Posts: 21

Re: [SOLVED] Issues installing silo-4.10.2-5

Thank you Lone_Wolf.
To install the package I simply tried

yaourt -S silo

I am even having trouble posting the full output sad I tried pb and ix as pastebin clients with the commands

 ~$ yaourt -S silo --noconfirm | curl -F 'f:1=<-' ix.io

But I get the message "curl: (55) Send failure: Connection reset by peer". I also tried by downloading the snapshot of the package and then doing "makepkg -s", but nothing. What can I do? However, while building, this line jumped to my eye:

./configure: line 23693: AX_CC_MAXOPT: command not found

but I do not know if it might mean anything...

Offline

#4 2016-07-29 19:20:00

mm___
Member
From: Konstanz, Germany
Registered: 2015-08-03
Posts: 21

Re: [SOLVED] Issues installing silo-4.10.2-5

I managed to paste the full output of the build: http://pastebin.com/kK8LqH5x

Offline

#5 2016-07-29 21:52:09

mm___
Member
From: Konstanz, Germany
Registered: 2015-08-03
Posts: 21

Re: [SOLVED] Issues installing silo-4.10.2-5

Contacted the maintainer of the package: 'solved' by adding the '--nocheck' option to the makepkg command; there was an error in the check function during the build.

What caused the error remains a mystery since I am not using any special configuration/aliases: looks like the makefile is trying to compile a bash script with gcc.

Last edited by mm___ (2016-07-29 22:01:16)

Offline

Pages: 1

Board footer

Powered by FluxBB