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#1 2018-01-05 04:56:59
- andalenavals
- Member
- Registered: 2017-10-30
- Posts: 39
Many files in conflict in two packages. PKGBUILD split.
Hi guys,
I am here again, I am being quite active this new year.
I have already shared with you this PKGBUILD
# Maintainer: Andres Alejandro Navarro Alsina <aanavarroa@unal.edu.co>
# Contributor: GalSim developers team on GitHub
pkgbase=python-galsim-git
pkgname=('python-galsim-git' 'python2-galsim-git' )
pkgver=v1.5.1.r0.9de448ef9
pkgrel=1
pkgdesc=" The modular galaxy image simulation toolkit "
arch=('i686' 'x86_64')
url="https://github.com/GalSim-developers/GalSim.git"
license=('BSD')
makedepends=('git' 'scons' 'boost' 'fftw' 'tmv-git' 'python')
source=("${pkgbase}::git+${url}")
md5sums=('SKIP')
pkgver() {
cd "${pkgbase}"
printf "%s" "$(git describe --long | sed 's/\([^-]*-\)g/r\1/;s/-/./g')"
}
prepare() {
cp -a $pkgbase{,-py2}
}
build() {
cd "$srcdir"/$pkgbase
scons PREFIX=/usr TMV_DIR=/usr PYTHON=python
cd "$srcdir"/$pkgbase-py2
scons PREFIX=/usr TMV_DIR=/usr PYTHON=python2
}
check() {
cd "$srcdir"/$pkgbase/tests
nosetests -v
cd "$srcdir"/$pkgbase-py2/tests
nosetests2 -v
}
package_python-galsim-git() {
depends=('python' 'boost-libs' 'fftw' 'tmv-git')
cd $pkgbase
scons PREFIX=$pkgdir/usr FINAL_PREFIX=/usr PYTHON=python install
install -Dm644 LICENSE $pkgdir/usr/share/licenses/$pkgname/LICENSE
}
package_python2-galsim-git() {
depends=('python2' 'boost-libs' 'fftw' 'tmv-git' )
cd $pkgbase-py2
scons PREFIX=$pkgdir/usr FINAL_PREFIX=/usr PYTHON=python2 install
install -Dm644 LICENSE $pkgdir/usr/share/licenses/$pkgname/LICENSE
}After getting many useful comments. Now I realize that when I want to install both packages there are many files in conflict. So that I only can have one package installed at the time and not both of them simultaneously.
Here the sequence of commands and outputs.
Command 1
makepkg -sOutput 1
==> Making package: python-galsim-git v1.5.1.r0.9de448ef9-1 (Thu Jan 4 23:25:31 -05 2018)
==> Checking runtime dependencies...
==> Checking buildtime dependencies...
==> Retrieving sources...
-> Cloning python-galsim-git git repo...
Cloning into bare repository '/data/packages/python-galsim-git/python-galsim-git/python-galsim-git'...
remote: Counting objects: 109338, done.
remote: Compressing objects: 100% (162/162), done.
remote: Total 109338 (delta 119), reused 139 (delta 70), pack-reused 109103
Receiving objects: 100% (109338/109338), 121.92 MiB | 506.00 KiB/s, done.
Resolving deltas: 100% (89742/89742), done.
==> Validating source files with md5sums...
python-galsim-git ... Skipped
==> Extracting sources...
-> Creating working copy of GalSim git repo...
Cloning into 'python-galsim-git'...
done.
==> Starting prepare()...
==> Starting pkgver()...
==> Starting build()...
scons: Reading SConscript files ...
SCons is version 3.0.1 using python version 2.7.14
Python is from /usr/include/python2.7
Using the following (non-default) scons options:
PYTHON = python
PREFIX = /usr
TMV_DIR = /usr
These can be edited directly in the file gs_scons.conf.
Type scons -h for a full list of available options.
Using python = /usr/bin/python
Using PYPREFIX generated from PREFIX = /usr/lib/python3.6/site-packages
Using compiler: /usr/bin/g++
compiler version: 7.2.1
Determined that a good number of jobs = 8
Using SSE with flag -msse2
Checking for C++ header file fftw3.h... yes
Checking for correct FFTW linkage... yes
Checking for boost header files... yes
Boost version is 1.65.1
Checking for C++ header file TMV.h... yes
TMV version is 0.75
Using TMV_LINK file: /usr/share/tmv/tmv-link
-L/usr/lib -ltmv -lcblas -lpthread -fopenmp
Checking for correct TMV linkage... (this may take a little while)
Checking for correct TMV linkage... yes
Checking if we can build against Python... yes
Building for python version 3.6
Checking if we can build module using TMV... yes
Checking if we can build against NumPy... yes
Numpy version is 1.13.3
Checking for PyFITS... yes
Astropy version is 2.0.2
Checking for future... yes
Future version is 0.16.0
Checking if we can build against Boost.Python... yes
Checking if C++ exceptions are propagated up to python... yes
GalSim version 1.5.1
scons: done reading SConscript files.
scons: Building targets ...
g++ -o src/.obj/BinomFact.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/BinomFact.cpp
g++ -o src/.obj/FFT.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/FFT.cpp
g++ -o src/.obj/Image.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/Image.cpp
g++ -o src/.obj/Interpolant.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/Interpolant.cpp
g++ -o src/.obj/Laguerre.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/Laguerre.cpp
g++ -o src/.obj/OneDimensionalDeviate.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/OneDimensionalDeviate.cpp
g++ -o src/.obj/PhotonArray.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/PhotonArray.cpp
g++ -o src/.obj/GSParams.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/GSParams.cpp
g++ -o src/.obj/SBProfile.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBProfile.cpp
g++ -o src/.obj/SBBox.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBBox.cpp
g++ -o src/.obj/SBGaussian.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBGaussian.cpp
g++ -o src/.obj/SBDeltaFunction.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBDeltaFunction.cpp
g++ -o src/.obj/SBExponential.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBExponential.cpp
g++ -o src/.obj/SBSersic.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBSersic.cpp
g++ -o src/.obj/SBMoffat.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBMoffat.cpp
g++ -o src/.obj/SBAiry.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBAiry.cpp
g++ -o src/.obj/SBShapelet.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBShapelet.cpp
g++ -o src/.obj/SBAdd.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBAdd.cpp
g++ -o src/.obj/SBConvolve.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBConvolve.cpp
g++ -o src/.obj/SBTransform.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBTransform.cpp
g++ -o src/.obj/SBInterpolatedImage.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBInterpolatedImage.cpp
g++ -o src/.obj/SBDeconvolve.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBDeconvolve.cpp
g++ -o src/.obj/SBFourierSqrt.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBFourierSqrt.cpp
g++ -o src/.obj/SBKolmogorov.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBKolmogorov.cpp
g++ -o src/.obj/SBSpergel.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBSpergel.cpp
g++ -o src/.obj/SBInclinedExponential.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBInclinedExponential.cpp
g++ -o src/.obj/SBInclinedSersic.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBInclinedSersic.cpp
g++ -o src/.obj/Table.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/Table.cpp
g++ -o src/.obj/RealSpaceConvolve.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/RealSpaceConvolve.cpp
g++ -o src/.obj/Random.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/Random.cpp
g++ -o src/.obj/CorrelatedNoise.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/CorrelatedNoise.cpp
g++ -o src/.obj/CDModel.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/CDModel.cpp
g++ -o src/.obj/Version.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/Version.cpp
g++ -o src/.obj/Polygon.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/Polygon.cpp
g++ -o src/.obj/Silicon.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/Silicon.cpp
g++ -o src/.obj/RealGalaxy.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/RealGalaxy.cpp
g++ -o src/.obj/WCS.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/WCS.cpp
g++ -o src/hsm/.obj/PSFCorr.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/hsm/PSFCorr.cpp
g++ -o src/.obj/sizeof_SIFD.o -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -Iinclude/galsim -Iinclude -I/usr/include src/sizeof_SIFD.cpp
g++ -o bin/sizeof_SIFD -fopenmp src/.obj/sizeof_SIFD.o -Llib -L/usr/lib -ltmv_symband -lfftw3 -lpthread -ltmv -lcblas -lpthread
g++ -o pysrc/.obj/module.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/module.cpp
g++ -o pysrc/.obj/Angle.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/Angle.cpp
g++ -o pysrc/.obj/Bounds.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/Bounds.cpp
g++ -o pysrc/.obj/PhotonArray.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/PhotonArray.cpp
g++ -o pysrc/.obj/Image.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/Image.cpp
g++ -o pysrc/.obj/SBProfile.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/SBProfile.cpp
g++ -o pysrc/.obj/SBAdd.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/SBAdd.cpp
g++ -o pysrc/.obj/SBConvolve.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/SBConvolve.cpp
g++ -o pysrc/.obj/SBDeconvolve.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/SBDeconvolve.cpp
g++ -o pysrc/.obj/SBFourierSqrt.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/SBFourierSqrt.cpp
g++ -o pysrc/.obj/SBTransform.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/SBTransform.cpp
g++ -o pysrc/.obj/SBBox.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/SBBox.cpp
g++ -o pysrc/.obj/SBGaussian.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/SBGaussian.cpp
g++ -o pysrc/.obj/SBDeltaFunction.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/SBDeltaFunction.cpp
g++ -o pysrc/.obj/SBExponential.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/SBExponential.cpp
g++ -o pysrc/.obj/SBSersic.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/SBSersic.cpp
g++ -o lib/libgalsim.so.1.5 -fopenmp -shared -Wl,-soname,libgalsim.so.1.5 src/.obj/BinomFact.os src/.obj/FFT.os src/.obj/Image.os src/.obj/Interpolant.os src/.obj/Laguerre.os src/.obj/OneDimensionalDeviate.os src/.obj/PhotonArray.os src/.obj/GSParams.os src/.obj/SBProfile.os src/.obj/SBBox.os src/.obj/SBGaussian.os src/.obj/SBDeltaFunction.os src/.obj/SBExponential.os src/.obj/SBSersic.os src/.obj/SBMoffat.os src/.obj/SBAiry.os src/.obj/SBShapelet.os src/.obj/SBAdd.os src/.obj/SBConvolve.os src/.obj/SBTransform.os src/.obj/SBInterpolatedImage.os src/.obj/SBDeconvolve.os src/.obj/SBFourierSqrt.os src/.obj/SBKolmogorov.os src/.obj/SBSpergel.os src/.obj/SBInclinedExponential.os src/.obj/SBInclinedSersic.os src/.obj/Table.os src/.obj/RealSpaceConvolve.os src/.obj/Random.os src/.obj/CorrelatedNoise.os src/.obj/CDModel.os src/.obj/Version.os src/.obj/Polygon.os src/.obj/Silicon.os src/.obj/RealGalaxy.os src/.obj/WCS.os src/hsm/.obj/PSFCorr.os -Llib -L/usr/lib -ltmv_symband -lfftw3 -lpthread -ltmv -lcblas -lpthread
SymLink(["lib/libgalsim.so"], ["lib/libgalsim.so.1.5"])
g++ -o pysrc/.obj/SBMoffat.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/SBMoffat.cpp
g++ -o pysrc/.obj/SBAiry.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/SBAiry.cpp
g++ -o pysrc/.obj/SBShapelet.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/SBShapelet.cpp
g++ -o pysrc/.obj/SBInterpolatedImage.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/SBInterpolatedImage.cpp
g++ -o pysrc/.obj/SBKolmogorov.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/SBKolmogorov.cpp
g++ -o pysrc/.obj/SBSpergel.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/SBSpergel.cpp
g++ -o pysrc/.obj/SBInclinedExponential.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/SBInclinedExponential.cpp
g++ -o pysrc/.obj/SBInclinedSersic.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/SBInclinedSersic.cpp
g++ -o pysrc/.obj/Random.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/Random.cpp
g++ -o pysrc/.obj/Noise.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/Noise.cpp
g++ -o pysrc/.obj/HSM.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/HSM.cpp
g++ -o pysrc/.obj/Integ.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/Integ.cpp
g++ -o pysrc/.obj/Table.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/Table.cpp
g++ -o pysrc/.obj/Interpolant.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/Interpolant.cpp
g++ -o pysrc/.obj/CorrelatedNoise.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/CorrelatedNoise.cpp
g++ -o pysrc/.obj/Bessel.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/Bessel.cpp
g++ -o pysrc/.obj/CDModel.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/CDModel.cpp
g++ -o pysrc/.obj/Silicon.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/Silicon.cpp
g++ -o pysrc/.obj/RealGalaxy.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/RealGalaxy.cpp
g++ -o pysrc/.obj/WCS.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python3.6m -I/usr/lib/python3.6/site-packages/numpy/core/include pysrc/WCS.cpp
BuildExecutableScript(["bin/galsim"], ["bin/galsim.py"])
BuildExecutableScript(["bin/galsim_yaml"], ["bin/galsim_yaml.py"])
BuildExecutableScript(["bin/galsim_json"], ["bin/galsim_json.py"])
BuildExecutableScript(["bin/galsim_download_cosmos"], ["bin/galsim_download_cosmos.py"])
BuildExecutableScript(["bin/installed_python"], ["bin/installed_python.py"])
g++ -o galsim/_galsim.so -fopenmp -pthread -shared -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -Wl,-rpath=/data/packages/python-galsim-git/python-galsim-git/src/python-galsim-git/lib pysrc/.obj/module.os pysrc/.obj/Angle.os pysrc/.obj/Bounds.os pysrc/.obj/PhotonArray.os pysrc/.obj/Image.os pysrc/.obj/SBProfile.os pysrc/.obj/SBAdd.os pysrc/.obj/SBConvolve.os pysrc/.obj/SBDeconvolve.os pysrc/.obj/SBFourierSqrt.os pysrc/.obj/SBTransform.os pysrc/.obj/SBBox.os pysrc/.obj/SBGaussian.os pysrc/.obj/SBDeltaFunction.os pysrc/.obj/SBExponential.os pysrc/.obj/SBSersic.os pysrc/.obj/SBMoffat.os pysrc/.obj/SBAiry.os pysrc/.obj/SBShapelet.os pysrc/.obj/SBInterpolatedImage.os pysrc/.obj/SBKolmogorov.os pysrc/.obj/SBSpergel.os pysrc/.obj/SBInclinedExponential.os pysrc/.obj/SBInclinedSersic.os pysrc/.obj/Random.os pysrc/.obj/Noise.os pysrc/.obj/HSM.os pysrc/.obj/Integ.os pysrc/.obj/Table.os pysrc/.obj/Interpolant.os pysrc/.obj/CorrelatedNoise.os pysrc/.obj/Bessel.os pysrc/.obj/CDModel.os pysrc/.obj/Silicon.os pysrc/.obj/RealGalaxy.os pysrc/.obj/WCS.os -Llib -L/usr/lib -lboost_python3 -ltmv_symband -lfftw3 -lpthread -ltmv -lcblas -lpthread -lgalsim
FinalMessages(["final"], [])
scons: done building targets.
scons: Reading SConscript files ...
SCons is version 3.0.1 using python version 2.7.14
Python is from /usr/include/python2.7
Using the following (non-default) scons options:
PYTHON = python2
PREFIX = /usr
TMV_DIR = /usr
These can be edited directly in the file gs_scons.conf.
Type scons -h for a full list of available options.
Using python = /usr/bin/python2
Using PYPREFIX generated from PREFIX = /usr/lib/python2.7/site-packages
Using compiler: /usr/bin/g++
compiler version: 7.2.1
Determined that a good number of jobs = 8
Using SSE with flag -msse2
Checking for C++ header file fftw3.h... yes
Checking for correct FFTW linkage... yes
Checking for boost header files... yes
Boost version is 1.65.1
Checking for C++ header file TMV.h... yes
TMV version is 0.75
Using TMV_LINK file: /usr/share/tmv/tmv-link
-L/usr/lib -ltmv -lcblas -lpthread -fopenmp
Checking for correct TMV linkage... (this may take a little while)
Checking for correct TMV linkage... yes
Checking if we can build against Python... yes
Building for python version 2.7
Checking if we can build module using TMV... yes
Checking if we can build against NumPy... yes
Numpy version is 1.13.3
Checking for PyFITS... yes
Astropy version is 2.0.2
Checking for future... yes
Future version is 0.16.0
Checking if we can build against Boost.Python... yes
Checking if C++ exceptions are propagated up to python... yes
GalSim version 1.5.1
scons: done reading SConscript files.
scons: Building targets ...
g++ -o src/.obj/BinomFact.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/BinomFact.cpp
g++ -o src/.obj/FFT.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/FFT.cpp
g++ -o src/.obj/Image.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/Image.cpp
g++ -o src/.obj/Interpolant.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/Interpolant.cpp
g++ -o src/.obj/Laguerre.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/Laguerre.cpp
g++ -o src/.obj/OneDimensionalDeviate.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/OneDimensionalDeviate.cpp
g++ -o src/.obj/PhotonArray.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/PhotonArray.cpp
g++ -o src/.obj/GSParams.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/GSParams.cpp
g++ -o src/.obj/SBProfile.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBProfile.cpp
g++ -o src/.obj/SBBox.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBBox.cpp
g++ -o src/.obj/SBGaussian.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBGaussian.cpp
g++ -o src/.obj/SBDeltaFunction.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBDeltaFunction.cpp
g++ -o src/.obj/SBExponential.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBExponential.cpp
g++ -o src/.obj/SBSersic.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBSersic.cpp
g++ -o src/.obj/SBMoffat.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBMoffat.cpp
g++ -o src/.obj/SBAiry.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBAiry.cpp
g++ -o src/.obj/SBShapelet.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBShapelet.cpp
g++ -o src/.obj/SBAdd.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBAdd.cpp
g++ -o src/.obj/SBConvolve.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBConvolve.cpp
g++ -o src/.obj/SBTransform.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBTransform.cpp
g++ -o src/.obj/SBInterpolatedImage.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBInterpolatedImage.cpp
g++ -o src/.obj/SBDeconvolve.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBDeconvolve.cpp
g++ -o src/.obj/SBFourierSqrt.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBFourierSqrt.cpp
g++ -o src/.obj/SBKolmogorov.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBKolmogorov.cpp
g++ -o src/.obj/SBSpergel.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBSpergel.cpp
g++ -o src/.obj/SBInclinedExponential.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBInclinedExponential.cpp
g++ -o src/.obj/SBInclinedSersic.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/SBInclinedSersic.cpp
g++ -o src/.obj/Table.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/Table.cpp
g++ -o src/.obj/RealSpaceConvolve.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/RealSpaceConvolve.cpp
g++ -o src/.obj/Random.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/Random.cpp
g++ -o src/.obj/CorrelatedNoise.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/CorrelatedNoise.cpp
g++ -o src/.obj/CDModel.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/CDModel.cpp
g++ -o src/.obj/Version.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/Version.cpp
g++ -o src/.obj/Polygon.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/Polygon.cpp
g++ -o src/.obj/Silicon.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/Silicon.cpp
g++ -o src/.obj/RealGalaxy.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/RealGalaxy.cpp
g++ -o src/.obj/WCS.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/WCS.cpp
g++ -o src/hsm/.obj/PSFCorr.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -Iinclude/galsim -Iinclude -I/usr/include src/hsm/PSFCorr.cpp
g++ -o src/.obj/sizeof_SIFD.o -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -Iinclude/galsim -Iinclude -I/usr/include src/sizeof_SIFD.cpp
g++ -o bin/sizeof_SIFD -fopenmp src/.obj/sizeof_SIFD.o -Llib -L/usr/lib -ltmv_symband -lfftw3 -lpthread -ltmv -lcblas -lpthread
g++ -o pysrc/.obj/module.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/module.cpp
g++ -o pysrc/.obj/Angle.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/Angle.cpp
g++ -o pysrc/.obj/Bounds.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/Bounds.cpp
g++ -o pysrc/.obj/PhotonArray.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/PhotonArray.cpp
g++ -o pysrc/.obj/Image.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/Image.cpp
g++ -o pysrc/.obj/SBProfile.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/SBProfile.cpp
g++ -o pysrc/.obj/SBAdd.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/SBAdd.cpp
g++ -o pysrc/.obj/SBConvolve.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/SBConvolve.cpp
g++ -o pysrc/.obj/SBDeconvolve.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/SBDeconvolve.cpp
g++ -o pysrc/.obj/SBFourierSqrt.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/SBFourierSqrt.cpp
g++ -o pysrc/.obj/SBTransform.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/SBTransform.cpp
g++ -o pysrc/.obj/SBBox.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/SBBox.cpp
g++ -o pysrc/.obj/SBGaussian.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/SBGaussian.cpp
g++ -o pysrc/.obj/SBDeltaFunction.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/SBDeltaFunction.cpp
g++ -o pysrc/.obj/SBExponential.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/SBExponential.cpp
g++ -o pysrc/.obj/SBSersic.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/SBSersic.cpp
g++ -o lib/libgalsim.so.1.5 -fopenmp -shared -Wl,-soname,libgalsim.so.1.5 src/.obj/BinomFact.os src/.obj/FFT.os src/.obj/Image.os src/.obj/Interpolant.os src/.obj/Laguerre.os src/.obj/OneDimensionalDeviate.os src/.obj/PhotonArray.os src/.obj/GSParams.os src/.obj/SBProfile.os src/.obj/SBBox.os src/.obj/SBGaussian.os src/.obj/SBDeltaFunction.os src/.obj/SBExponential.os src/.obj/SBSersic.os src/.obj/SBMoffat.os src/.obj/SBAiry.os src/.obj/SBShapelet.os src/.obj/SBAdd.os src/.obj/SBConvolve.os src/.obj/SBTransform.os src/.obj/SBInterpolatedImage.os src/.obj/SBDeconvolve.os src/.obj/SBFourierSqrt.os src/.obj/SBKolmogorov.os src/.obj/SBSpergel.os src/.obj/SBInclinedExponential.os src/.obj/SBInclinedSersic.os src/.obj/Table.os src/.obj/RealSpaceConvolve.os src/.obj/Random.os src/.obj/CorrelatedNoise.os src/.obj/CDModel.os src/.obj/Version.os src/.obj/Polygon.os src/.obj/Silicon.os src/.obj/RealGalaxy.os src/.obj/WCS.os src/hsm/.obj/PSFCorr.os -Llib -L/usr/lib -ltmv_symband -lfftw3 -lpthread -ltmv -lcblas -lpthread
SymLink(["lib/libgalsim.so"], ["lib/libgalsim.so.1.5"])
g++ -o pysrc/.obj/SBMoffat.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/SBMoffat.cpp
g++ -o pysrc/.obj/SBAiry.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/SBAiry.cpp
g++ -o pysrc/.obj/SBShapelet.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/SBShapelet.cpp
g++ -o pysrc/.obj/SBInterpolatedImage.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/SBInterpolatedImage.cpp
g++ -o pysrc/.obj/SBKolmogorov.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/SBKolmogorov.cpp
g++ -o pysrc/.obj/SBSpergel.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/SBSpergel.cpp
g++ -o pysrc/.obj/SBInclinedExponential.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/SBInclinedExponential.cpp
g++ -o pysrc/.obj/SBInclinedSersic.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/SBInclinedSersic.cpp
g++ -o pysrc/.obj/Random.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/Random.cpp
g++ -o pysrc/.obj/Noise.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/Noise.cpp
g++ -o pysrc/.obj/HSM.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/HSM.cpp
g++ -o pysrc/.obj/Integ.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/Integ.cpp
g++ -o pysrc/.obj/Table.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/Table.cpp
g++ -o pysrc/.obj/Interpolant.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/Interpolant.cpp
g++ -o pysrc/.obj/CorrelatedNoise.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/CorrelatedNoise.cpp
g++ -o pysrc/.obj/Bessel.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/Bessel.cpp
g++ -o pysrc/.obj/CDModel.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/CDModel.cpp
g++ -o pysrc/.obj/Silicon.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/Silicon.cpp
g++ -o pysrc/.obj/RealGalaxy.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/RealGalaxy.cpp
g++ -o pysrc/.obj/WCS.os -c -O2 -std=c++98 -fno-strict-aliasing -msse2 -fPIC -fPIC -Iinclude/galsim -Iinclude -I/usr/include -I/usr/include/python2.7 -I/usr/lib/python2.7/site-packages/numpy/core/include pysrc/WCS.cpp
BuildExecutableScript(["bin/galsim"], ["bin/galsim.py"])
BuildExecutableScript(["bin/galsim_yaml"], ["bin/galsim_yaml.py"])
BuildExecutableScript(["bin/galsim_json"], ["bin/galsim_json.py"])
BuildExecutableScript(["bin/galsim_download_cosmos"], ["bin/galsim_download_cosmos.py"])
BuildExecutableScript(["bin/installed_python"], ["bin/installed_python.py"])
g++ -o galsim/_galsim.so -fopenmp -pthread -shared -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -Wl,-rpath=/data/packages/python-galsim-git/python-galsim-git/src/python-galsim-git-py2/lib pysrc/.obj/module.os pysrc/.obj/Angle.os pysrc/.obj/Bounds.os pysrc/.obj/PhotonArray.os pysrc/.obj/Image.os pysrc/.obj/SBProfile.os pysrc/.obj/SBAdd.os pysrc/.obj/SBConvolve.os pysrc/.obj/SBDeconvolve.os pysrc/.obj/SBFourierSqrt.os pysrc/.obj/SBTransform.os pysrc/.obj/SBBox.os pysrc/.obj/SBGaussian.os pysrc/.obj/SBDeltaFunction.os pysrc/.obj/SBExponential.os pysrc/.obj/SBSersic.os pysrc/.obj/SBMoffat.os pysrc/.obj/SBAiry.os pysrc/.obj/SBShapelet.os pysrc/.obj/SBInterpolatedImage.os pysrc/.obj/SBKolmogorov.os pysrc/.obj/SBSpergel.os pysrc/.obj/SBInclinedExponential.os pysrc/.obj/SBInclinedSersic.os pysrc/.obj/Random.os pysrc/.obj/Noise.os pysrc/.obj/HSM.os pysrc/.obj/Integ.os pysrc/.obj/Table.os pysrc/.obj/Interpolant.os pysrc/.obj/CorrelatedNoise.os pysrc/.obj/Bessel.os pysrc/.obj/CDModel.os pysrc/.obj/Silicon.os pysrc/.obj/RealGalaxy.os pysrc/.obj/WCS.os -Llib -L/usr/lib -lboost_python -ltmv_symband -lfftw3 -lpthread -ltmv -lcblas -lpthread -lgalsim
FinalMessages(["final"], [])
scons: done building targets.
==> Starting check()...
test_bandpass.test_Bandpass_basic ... ok
test_bandpass.test_Bandpass_div ... ok
test_bandpass.test_Bandpass_mul ... ok
test_bandpass.test_Bandpass_wave_type ... ok
test_bandpass.test_ne ... ok
test_bandpass.test_thin ... ok
test_bandpass.test_truncate_inputs ... ok
test_bandpass.test_zp ... ok
test_base.test_airy ... ok
test_base.test_airy_flux_scaling ... ok
test_base.test_airy_radii ... ok
test_base.test_box ... ok
test_base.test_deltaFunction ... ok
test_base.test_deltaFunction_convolution ... ok
test_base.test_deltaFunction_flux_scaling ... ok
test_base.test_deltaFunction_properties ... ok
test_base.test_exponential ... ok
test_base.test_exponential_flux_scaling ... ok
test_base.test_exponential_properties ... ok
test_base.test_exponential_radii ... ok
test_base.test_gaussian ... ok
test_base.test_gaussian_flux_scaling ... ok
test_base.test_gaussian_properties ... ok
test_base.test_gaussian_radii ... ok
test_base.test_kolmogorov ... ok
test_base.test_kolmogorov_flux_scaling ... ok
test_base.test_kolmogorov_properties ... ok
test_base.test_kolmogorov_radii ... ok
test_base.test_moffat ... ok
test_base.test_moffat_flux_scaling ... ok
test_base.test_moffat_properties ... ok
test_base.test_moffat_radii ... ok
test_base.test_ne ... ok
test_base.test_sersic ... ok
test_base.test_sersic_05 ... ok
test_base.test_sersic_1 ... ok
test_base.test_sersic_flux_scaling ... ok
test_base.test_sersic_radii ... ok
test_base.test_spergel ... ok
test_base.test_spergel_05 ... ok
test_base.test_spergel_flux_scaling ... ok
test_base.test_spergel_properties ... ok
test_base.test_spergel_radii ... ok
test_base.test_tophat ... ok
test_bessel.test_j0 ... ok
test_bessel.test_j0_root ... ok
test_bessel.test_j1 ... ok
test_bessel.test_jn ... ok
test_bessel.test_jv ... ok
test_bessel.test_kn ... ok
test_bessel.test_kv ... ok
test_calc.test_fwhm ... ok
test_calc.test_hlr ... ok
test_calc.test_sigma ... ok
test_catalog.test_basic_catalog ... ok
test_catalog.test_basic_dict ... ok
test_catalog.test_output_catalog ... ok
test_catalog.test_single_row ... ok
test_cdmodel.test_exampleimage ... ok
test_cdmodel.test_fluxconservation ... ok
test_cdmodel.test_forwardbackward ... ok
test_cdmodel.test_gainratio ... ok
test_cdmodel.test_simplegeometry ... ok
test_celestial.test_angle ... ok
test_celestial.test_celestialcoord_angleBetween ... ok
test_celestial.test_celestialcoord_basic ... ok
test_celestial.test_celestialcoord_distance ... ok
test_celestial.test_ecliptic ... ok
test_celestial.test_galactic ... ok
test_celestial.test_precess ... ok
test_celestial.test_projection ... ok
test_chromatic.test_ChromaticAiry ... ok
test_chromatic.test_ChromaticAutoConvolution ... ok
test_chromatic.test_ChromaticAutoCorrelation ... ok
test_chromatic.test_ChromaticConvolution_InterpolatedImage ... ok
test_chromatic.test_ChromaticConvolution_of_ChromaticConvolution ... ok
test_chromatic.test_ChromaticObject_compound_affine_transformation ... ok
test_chromatic.test_ChromaticObject_expand ... ok
test_chromatic.test_ChromaticObject_rotate ... ok
test_chromatic.test_ChromaticObject_shear ... ok
test_chromatic.test_ChromaticObject_shift ... ok
test_chromatic.test_ChromaticOpticalPSF ... ok
test_chromatic.test_analytic_integrator ... ok
test_chromatic.test_centroid ... ok
test_chromatic.test_chromatic_add ... ok
test_chromatic.test_chromatic_fiducial_wavelength ... ok
test_chromatic.test_chromatic_flux ... ok
test_chromatic.test_chromatic_image_setup ... ok
test_chromatic.test_chromatic_invariant ... ok
test_chromatic.test_chromatic_seeing_moments ... ok
test_chromatic.test_convolution_of_spectral ... ok
test_chromatic.test_dcr_moments ... ok
test_chromatic.test_double_ChromaticSum ... ok
test_chromatic.test_draw_add_commutativity ... ok
test_chromatic.test_gsparam ... ok
test_chromatic.test_interpolated_ChromaticObject ... ok
test_chromatic.test_monochromatic_filter ... ok
test_chromatic.test_ne ... ok
test_chromatic.test_separable_ChromaticSum ... ok
test_compound.test_add ... ok
test_compound.test_add_flux_scaling ... ok
test_compound.test_autoconvolve ... ok
test_compound.test_autocorrelate ... ok
test_compound.test_compound_noise ... ok
test_compound.test_convolve ... ok
test_compound.test_convolve_flux_scaling ... ok
test_compound.test_deconvolve ... ok
test_compound.test_fourier_sqrt ... ok
test_compound.test_ne ... ok
test_compound.test_realspace_convolve ... ok
test_compound.test_realspace_distorted_convolve ... ok
test_compound.test_realspace_shearconvolve ... ok
test_compound.test_shearconvolve ... ok
test_compound.test_sub_neg ... ok
test_compound.test_sum_transform ... ok
test_config_gsobject.test_add ... ok
test_config_gsobject.test_airy ... ok
test_config_gsobject.test_convolve ... ok
test_config_gsobject.test_cosmosgalaxy ... ok
test_config_gsobject.test_devaucouleurs ... ok
test_config_gsobject.test_exponential ... ok
test_config_gsobject.test_gaussian ... ok
test_config_gsobject.test_inclined_exponential ... ok
test_config_gsobject.test_inclined_sersic ... ok
test_config_gsobject.test_interpolated_image ... ok
test_config_gsobject.test_kolmogorov ... ok
test_config_gsobject.test_list ... ok
test_config_gsobject.test_moffat ... ok
test_config_gsobject.test_opticalpsf ... ok
test_config_gsobject.test_pixel ... ok
test_config_gsobject.test_realgalaxy ... ok
test_config_gsobject.test_repeat ... ok
test_config_gsobject.test_sersic ... ok
test_config_gsobject.test_usertype ... ok
test_config_image.test_index_key ... ok
test_config_image.test_multirng ... ok
test_config_image.test_njobs ... ok
test_config_image.test_phot ... ok
test_config_image.test_positions ... ok
test_config_image.test_reject ... ok
test_config_image.test_ring ... ok
test_config_image.test_scattered ... ok
test_config_image.test_scattered_whiten ... ok
test_config_image.test_single ... ok
test_config_image.test_snr ... ok
test_config_image.test_template ... ok
test_config_image.test_tiled ... ok
test_config_image.test_variable_cat_size ... ok
test_config_image.test_wcs ... ok
test_config_noise.test_ccdnoise ... ok
test_config_noise.test_ccdnoise_phot ... ok
test_config_noise.test_cosmosnoise ... ok
test_config_noise.test_gaussian ... ok
test_config_noise.test_poisson ... ok
test_config_noise.test_whiten ... ok
test_config_output.test_config ... ok
test_config_output.test_datacube ... ok
test_config_output.test_extra_psf ... ok
test_config_output.test_extra_truth ... ok
test_config_output.test_extra_wt ... ok
test_config_output.test_fits ... ok
test_config_output.test_multifits ... ok
test_config_output.test_no_output ... ok
test_config_output.test_retry_io ... ok
test_config_output.test_skip ... ok
test_config_value.test_angle_value ... ok
test_config_value.test_bool_value ... ok
test_config_value.test_eval ... ok
test_config_value.test_float_value ... ok
test_config_value.test_int_value ... ok
test_config_value.test_pos_value ... ok
test_config_value.test_shear_value ... ok
test_config_value.test_str_value ... ok
test_correlatednoise.test_arbitrary_rotation ... ok
test_correlatednoise.test_convolve_cosmos ... ok
test_correlatednoise.test_copy ... ok
test_correlatednoise.test_cosmos_and_whitening ... ok
test_correlatednoise.test_cosmos_wcs ... ok
test_correlatednoise.test_covariance_spectrum ... ok
test_correlatednoise.test_drawImage ... ok
test_correlatednoise.test_jacobian ... ok
test_correlatednoise.test_output_generation_basic ... ok
test_correlatednoise.test_output_generation_magnified ... ok
test_correlatednoise.test_output_generation_rotated ... ok
test_correlatednoise.test_scaling ... ok
test_correlatednoise.test_symmetrizing ... ok
test_correlatednoise.test_uncorrelated_noise_nonzero_lag ... ok
test_correlatednoise.test_uncorrelated_noise_output ... ok
test_correlatednoise.test_uncorrelated_noise_symmetry_90degree_rotation ... ok
test_correlatednoise.test_uncorrelated_noise_tracking ... ok
test_correlatednoise.test_uncorrelated_noise_zero_lag ... ok
test_correlatednoise.test_variance_changes ... ok
test_correlatednoise.test_xcorr_noise_basics_symmetry_90degree_rotation ... ok
test_correlatednoise.test_ycorr_noise_basics_symmetry_90degree_rotation ... ok
test_deprecated.test_dep_bandpass ... ok
test_deprecated.test_dep_base ... ok
test_deprecated.test_dep_bounds ... ok
test_deprecated.test_dep_chromatic ... ok
test_deprecated.test_dep_correlatednoise ... ok
test_deprecated.test_dep_drawKImage ... ok
test_deprecated.test_dep_drawKImage_Gaussian ... ok
test_deprecated.test_dep_ecliptic ... ok
test_deprecated.test_dep_gsobject_ring ... ok
test_deprecated.test_dep_image ... ok
test_deprecated.test_dep_interp ... ok
test_deprecated.test_dep_kroundtrip ... ok
test_deprecated.test_dep_noise ... ok
test_deprecated.test_dep_optics ... ok
test_deprecated.test_dep_phase_psf ... ok
test_deprecated.test_dep_photon_array ... ok
test_deprecated.test_dep_random ... ok
test_deprecated.test_dep_scene ... ok
test_deprecated.test_dep_sed ... ok
test_deprecated.test_dep_shapelet ... ok
test_deprecated.test_dep_shapelet_fit ... ok
test_deprecated.test_dep_shear ... ok
test_deprecated.test_dep_simreal ... ok
test_deprecated.test_dep_table ... ok
test_deprecated.test_dep_wmult ... ok
test_des.test_meds ... ok
test_des.test_meds_config ... ok
test_des.test_nan_fits ... ok
test_des.test_psf ... ok
test_des.test_psf_config ... ok
test_detectors.test_IPC_basic ... ok
test_detectors.test_Persistence_basic ... ok
test_detectors.test_nonlinearity_basic ... ok
test_detectors.test_quantize ... ok
test_detectors.test_recipfail_basic ... ok
test_draw.test_direct_scale ... ok
test_draw.test_drawImage ... ok
test_draw.test_drawImage_area_exptime ... ok
test_draw.test_drawKImage ... ok
test_draw.test_drawKImage_Exponential_Moffat ... ok
test_draw.test_drawKImage_Gaussian ... ok
test_draw.test_draw_methods ... ok
test_draw.test_fft ... ok
test_draw.test_np_fft ... ok
test_draw.test_offset ... ok
test_draw.test_types ... ok
test_draw.test_shoot ... ok
test_fitsheader.test_dict ... ok
test_fitsheader.test_read ... ok
test_fitsheader.test_scamp ... ok
test_hsm.test_bounds_centroid ... ok
test_hsm.test_hsmparams ... ok
test_hsm.test_hsmparams_nodefault ... ok
test_hsm.test_ksb_sig ... ok
test_hsm.test_masks ... ok
test_hsm.test_moments_basic ... ok
test_hsm.test_noncontiguous ... ok
test_hsm.test_shapedata ... ok
test_hsm.test_shearest_basic ... ok
test_hsm.test_shearest_precomputed ... ok
test_hsm.test_shearest_shape ... ok
test_hsm.test_strict ... ok
test_image.test_BoundsI_init_with_non_pure_ints ... ok
test_image.test_ConstImage_array_constness ... ok
test_image.test_FITS_bad_type ... ok
test_image.test_Image_CubeFITS_IO ... /usr/lib/python3.6/subprocess.py:766: ResourceWarning: subprocess 7495 is still running
ResourceWarning, source=self)
/usr/lib/python3.6/subprocess.py:766: ResourceWarning: subprocess 7502 is still running
ResourceWarning, source=self)
ok
test_image.test_Image_FITS_IO ... ok
test_image.test_Image_MultiFITS_IO ... ok
test_image.test_Image_array_view ... ok
test_image.test_Image_basic ... ok
test_image.test_Image_binary_add ... ok
test_image.test_Image_binary_divide ... ok
test_image.test_Image_binary_multiply ... ok
test_image.test_Image_binary_scalar_add ... ok
test_image.test_Image_binary_scalar_divide ... ok
test_image.test_Image_binary_scalar_multiply ... ok
test_image.test_Image_binary_scalar_pow ... ok
test_image.test_Image_binary_scalar_subtract ... ok
test_image.test_Image_binary_subtract ... ok
test_image.test_Image_constructor ... ok
test_image.test_Image_inplace_add ... ok
test_image.test_Image_inplace_divide ... ok
test_image.test_Image_inplace_multiply ... ok
test_image.test_Image_inplace_scalar_add ... ok
test_image.test_Image_inplace_scalar_divide ... ok
test_image.test_Image_inplace_scalar_multiply ... ok
test_image.test_Image_inplace_scalar_pow ... ok
test_image.test_Image_inplace_scalar_subtract ... ok
test_image.test_Image_inplace_subtract ... ok
test_image.test_Image_resize ... ok
test_image.test_Image_subImage ... ok
test_image.test_Image_view ... ok
test_image.test_Image_writeheader ... ok
test_image.test_bin ... ok
test_image.test_complex_image ... ok
test_image.test_complex_image_arith ... ok
test_image.test_copy ... ok
test_image.test_int_image_arith ... ok
test_image.test_ne ... ok
test_image.test_subImage_persistence ... ok
test_image.test_undefined_image ... ok
test_image.test_wrap ... ok
test_inclined_exponential.test_edge_on ... ok
test_inclined_exponential.test_eq_ne ... ok
test_inclined_exponential.test_exceptions ... ok
test_inclined_exponential.test_exponential ... ok
test_inclined_exponential.test_k_limits ... ok
test_inclined_exponential.test_pickle ... ok
test_inclined_exponential.test_regression ... ok
test_inclined_exponential.test_sanity ... ok
test_inclined_exponential.test_sersic ... ok
test_inclined_exponential.test_value_retrieval ... ok
test_integ.test_gaussian_finite_limits ... ok
test_integ.test_gaussian_infinite_limits ... ok
test_integ.test_invroot_finite_limits ... ok
test_integ.test_invroot_infinite_limits ... ok
test_integ.test_midpoint_basic ... ok
test_integ.test_sinxsqexpabsx_finite_limits ... ok
test_integ.test_sinxsqexpabsx_infinite_limits ... ok
test_integ.test_trapz_basic ... ok
test_interpolatedimage.test_Cubic_ref ... ok
test_interpolatedimage.test_Lanczos5_ref ... ok
test_interpolatedimage.test_Lanczos7_ref ... ok
test_interpolatedimage.test_Quintic_ref ... ok
test_interpolatedimage.test_conserve_dc ... ok
test_interpolatedimage.test_corr_padding ... ok
test_interpolatedimage.test_exceptions ... ok
test_interpolatedimage.test_fluxnorm ... ok
test_interpolatedimage.test_kroundtrip ... ok
test_interpolatedimage.test_multihdu_readin ... ok
test_interpolatedimage.test_ne ... ok
test_interpolatedimage.test_operations ... ok
test_interpolatedimage.test_operations_simple ... ok
test_interpolatedimage.test_pad_image ... ok
test_interpolatedimage.test_realspace_conv ... ok
test_interpolatedimage.test_roundtrip ... ok
test_interpolatedimage.test_stepk_maxk ... ok
test_interpolatedimage.test_uncorr_padding ... ok
test_lensing.test_bandlimit ... ok
test_lensing.test_corr_func ... ok
test_lensing.test_cosmology ... ok
test_lensing.test_kappa_gauss ... ok
test_lensing.test_nfwhalo ... ok
test_lensing.test_normalization ... ok
test_lensing.test_periodic ... ok
test_lensing.test_power_spectrum_with_kappa ... ok
test_lensing.test_psr ... ok
test_lensing.test_shear_get ... ok
test_lensing.test_shear_reference ... ok
test_lensing.test_shear_seeds ... ok
test_lensing.test_shear_units ... ok
test_lensing.test_shear_variance ... ok
test_lensing.test_tabulated ... ok
test_attribute_exceptions (test_lsst.LsstCameraTestClass) ... SKIP: LSST stack not installed
test_pupil_coordinates (test_lsst.LsstCameraTestClass) ... SKIP: LSST stack not installed
test_pupil_coordinates_from_floats (test_lsst.LsstCameraTestClass) ... SKIP: LSST stack not installed
test_pupil_coords_from_pixel_coords (test_lsst.LsstCameraTestClass) ... SKIP: LSST stack not installed
test_ra_dec_from_pupil_coords (test_lsst.LsstCameraTestClass) ... SKIP: LSST stack not installed
test_rotation_angle_pixel_coordinate_convention (test_lsst.LsstCameraTestClass) ... SKIP: LSST stack not installed
test_rotation_angle_pupil_coordinate_convention (test_lsst.LsstCameraTestClass) ... SKIP: LSST stack not installed
test_attribute_exceptions (test_lsst.LsstWcsTestCase) ... SKIP: LSST stack not installed
test_constructor (test_lsst.LsstWcsTestCase) ... SKIP: LSST stack not installed
test_copy (test_lsst.LsstWcsTestCase) ... SKIP: LSST stack not installed
test_eq (test_lsst.LsstWcsTestCase) ... SKIP: LSST stack not installed
test_passing_camera_by_hand (test_lsst.LsstWcsTestCase) ... SKIP: LSST stack not installed
test_pickling (test_lsst.LsstWcsTestCase) ... SKIP: LSST stack not installed
test_round_trip (test_lsst.LsstWcsTestCase) ... SKIP: LSST stack not installed
test_tan_sip_wcs (test_lsst.LsstWcsTestCase) ... SKIP: LSST stack not installed
test_tan_wcs (test_lsst.LsstWcsTestCase) ... SKIP: LSST stack not installed
testNativeLonLat (test_lsst.NativeLonLatTest) ... SKIP: LSST stack not installed
testNativeLonLatVector (test_lsst.NativeLonLatTest) ... SKIP: LSST stack not installed
testNativeLongLatComplicated (test_lsst.NativeLonLatTest) ... SKIP: LSST stack not installed
test_metacal.test_metacal_tracking ... ok
test_metacal.test_wcs ... ok
/data/packages/python-galsim-git/python-galsim-git/src/python-galsim-git/tests/test_optics.py:708: DeprecationWarning: invalid escape sequence \i
"""
test_optics.test_OpticalPSF_aberrations_kwargs ... ok
test_optics.test_OpticalPSF_aberrations_struts ... ok
test_optics.test_OpticalPSF_aper ... ok
test_optics.test_OpticalPSF_flux ... ok
test_optics.test_OpticalPSF_flux_scaling ... ok
test_optics.test_OpticalPSF_lamdiam ... ok
test_optics.test_OpticalPSF_pupil_plane ... ok
test_optics.test_OpticalPSF_pupil_plane_size ... ok
test_optics.test_OpticalPSF_vs_Airy ... ok
test_optics.test_OpticalPSF_vs_Airy_with_obs ... ok
test_optics.test_Zernike_orthonormality ... ok
test_optics.test_annular_Zernike_limit ... ok
test_optics.test_geometric_shoot ... ok
test_optics.test_ne ... ok
test_optics.test_noll ... ok
test_optics.test_stepk_maxk_iipad ... ok
test_phase_psf.test_aperture ... ok
test_phase_psf.test_atm_screen_size ... ok
test_phase_psf.test_frozen_flow ... ok
test_phase_psf.test_input ... ok
test_phase_psf.test_ne ... ok
test_phase_psf.test_opt_indiv_aberrations ... ok
test_phase_psf.test_phase_gradient_shoot ... ok
test_phase_psf.test_phase_psf_batch ... ok
test_phase_psf.test_phase_psf_reset ... ok
test_phase_psf.test_phase_screen_list ... ok
test_phase_psf.test_r0_weights ... ok
test_phase_psf.test_scale_unit ... ok
test_phase_psf.test_speedup ... ok
test_phase_psf.test_stepk_maxk ... ok
test_phase_psf.test_structure_function ... ok
test_photon_array.test_photon_angles ... ok
test_photon_array.test_photon_array ... ok
test_photon_array.test_photon_io ... ok
test_photon_array.test_wavelength_sampler ... ok
test_pse.test_PSE_basic ... ok
test_random.test_addnoisesnr ... ok
test_random.test_binomial ... ok
test_random.test_ccdnoise ... ok
test_random.test_chi2 ... ok
test_random.test_distLookupTable ... ok
test_random.test_distfunction ... ok
test_random.test_gamma ... ok
test_random.test_gaussian ... ok
test_random.test_multiprocess ... ok
test_random.test_ne ... ok
test_random.test_permute ... ok
test_random.test_poisson ... ok
test_random.test_poisson_highmean ... ok
test_random.test_uniform ... ok
test_random.test_variable_gaussian_noise ... ok
test_random.test_weibull ... ok
test_randwalk.test_randwalk_config ... ok
test_randwalk.test_randwalk_defaults ... ok
test_randwalk.test_randwalk_hlr ... ok
test_randwalk.test_randwalk_invalid_inputs ... ok
test_randwalk.test_randwalk_repr ... ok
test_randwalk.test_randwalk_valid_inputs ... ok
test_real.test_area_norm ... ok
test_real.test_crg_noise ... ok
test_real.test_crg_noise_draw_transform_commutativity ... ok
test_real.test_crg_noise_pad ... ok
test_real.test_crg_roundtrip ... ok
test_real.test_crg_roundtrip_larger_target_psf ... ok
test_real.test_ne ... ok
test_real.test_noise ... ok
test_real.test_pickle_crg ... ok
test_real.test_real_galaxy_ideal ... ok
test_real.test_real_galaxy_makeFromImage ... ok
test_real.test_real_galaxy_saved ... ok
test_scene.test_cosmos_basic ... ok
test_scene.test_cosmos_fluxnorm ... ok
test_scene.test_cosmos_random ... ok
test_sed.test_SED_add ... ok
test_sed.test_SED_atRedshift ... ok
test_sed.test_SED_basic ... ok
test_sed.test_SED_calculateDCRMomentShifts ... ok
test_sed.test_SED_calculateMagnitude ... ok
test_sed.test_SED_calculateSeeingMomentRatio ... ok
test_sed.test_SED_div ... ok
test_sed.test_SED_init ... ok
test_sed.test_SED_mul ... ok
test_sed.test_SED_roundoff_guard ... ok
test_sed.test_SED_sampleWavelength ... ok
test_sed.test_SED_sub ... ok
test_sed.test_SED_withFlux ... ok
test_sed.test_SED_withFluxDensity ... ok
test_sed.test_combine_wave_list ... ok
test_sed.test_fnu_vs_flambda ... ok
test_sed.test_ne ... ok
test_sed.test_redshift_calculateFlux ... ok
test_sed.test_thin ... ok
test_sensor.test_bf_slopes ... ok
test_sensor.test_sensor_wavelengths_and_angles ... ok
test_sensor.test_silicon ... ok
test_sensor.test_silicon_fft ... ok
test_sensor.test_simple ... ok
test_sensor.test_treerings ... ok
test_shapelet.test_ne ... ok
test_shapelet.test_shapelet_adjustments ... ok
test_shapelet.test_shapelet_drawImage ... ok
test_shapelet.test_shapelet_fit ... ok
test_shapelet.test_shapelet_gaussian ... ok
test_shapelet.test_shapelet_properties ... ok
test_shear.test_shear_initialization ... ok
test_shear.test_shear_matrix ... ok
test_shear.test_shear_methods ... ok
test_table.test_from_func ... ok
test_table.test_init ... ok
test_table.test_log ... ok
test_table.test_ne ... ok
test_table.test_roundoff ... ok
test_table.test_table ... ok
test_table.test_table2d ... ok
test_table.test_table2d_gradient ... ok
test_transforms.test_compound ... ok
test_transforms.test_flip ... ok
test_transforms.test_integer_shift_fft ... ok
test_transforms.test_integer_shift_photon ... ok
test_transforms.test_largeshear ... ok
test_transforms.test_lens ... ok
test_transforms.test_mag ... ok
test_transforms.test_ne ... ok
test_transforms.test_rescale ... ok
test_transforms.test_rotate ... ok
test_transforms.test_shift ... ok
test_transforms.test_smallshear ... ok
test_utilities.test_check_all_contiguous ... ok
test_utilities.test_deInterleaveImage ... ok
test_utilities.test_interleaveImages ... ok
test_utilities.test_kxky ... ok
test_utilities.test_kxky_plusone ... ok
test_utilities.test_position_type_promotion ... ok
test_utilities.test_python_LRU_Cache ... ok
test_utilities.test_rand_with_replacement ... ok
test_utilities.test_roll2d_circularity ... ok
test_utilities.test_roll2d_fwdbck ... ok
test_utilities.test_roll2d_join ... ok
test_utilities.test_unweighted_moments ... ok
test_utilities.test_dol_to_lod ... ok
test_wcs.test_affinetransform ... ok
test_wcs.test_astropywcs ... ok
test_wcs.test_coadd ... ok
test_wcs.test_compateq ... ok
test_wcs.test_fitswcs ... ok
test_wcs.test_gsfitswcs ... ok
test_wcs.test_pixelscale ... ok
test_wcs.test_pyastwcs ... ok
test_wcs.test_radecfunction ... ok
test_wcs.test_scamp ... ok
test_wcs.test_shearwcs ... ok
test_wcs.test_uvfunction ... ok
test_wcs.test_wcstools ... ok
test_wfirst.test_wfirst_backgrounds ... ok
test_wfirst.test_wfirst_bandpass ... ok
test_wfirst.test_wfirst_basic_numbers ... ok
test_wfirst.test_wfirst_detectors ... ok
test_wfirst.test_wfirst_psfs ... ok
test_wfirst.test_wfirst_wcs ... ok
----------------------------------------------------------------------
Ran 527 tests in 336.756s
OK (SKIP=19)
test_bandpass.test_Bandpass_basic ... ok
test_bandpass.test_Bandpass_div ... ok
test_bandpass.test_Bandpass_mul ... ok
test_bandpass.test_Bandpass_wave_type ... ok
test_bandpass.test_ne ... ok
test_bandpass.test_thin ... ok
test_bandpass.test_truncate_inputs ... ok
test_bandpass.test_zp ... ok
test_base.test_airy ... ok
test_base.test_airy_flux_scaling ... ok
test_base.test_airy_radii ... ok
test_base.test_box ... ok
test_base.test_deltaFunction ... ok
test_base.test_deltaFunction_convolution ... ok
test_base.test_deltaFunction_flux_scaling ... ok
test_base.test_deltaFunction_properties ... ok
test_base.test_exponential ... ok
test_base.test_exponential_flux_scaling ... ok
test_base.test_exponential_properties ... ok
test_base.test_exponential_radii ... ok
test_base.test_gaussian ... ok
test_base.test_gaussian_flux_scaling ... ok
test_base.test_gaussian_properties ... ok
test_base.test_gaussian_radii ... ok
test_base.test_kolmogorov ... ok
test_base.test_kolmogorov_flux_scaling ... ok
test_base.test_kolmogorov_properties ... ok
test_base.test_kolmogorov_radii ... ok
test_base.test_moffat ... ok
test_base.test_moffat_flux_scaling ... ok
test_base.test_moffat_properties ... ok
test_base.test_moffat_radii ... ok
test_base.test_ne ... ok
test_base.test_sersic ... ok
test_base.test_sersic_05 ... ok
test_base.test_sersic_1 ... ok
test_base.test_sersic_flux_scaling ... ok
test_base.test_sersic_radii ... ok
test_base.test_spergel ... ok
test_base.test_spergel_05 ... ok
test_base.test_spergel_flux_scaling ... ok
test_base.test_spergel_properties ... ok
test_base.test_spergel_radii ... ok
test_base.test_tophat ... ok
test_bessel.test_j0 ... ok
test_bessel.test_j0_root ... ok
test_bessel.test_j1 ... ok
test_bessel.test_jn ... ok
test_bessel.test_jv ... ok
test_bessel.test_kn ... ok
test_bessel.test_kv ... ok
test_calc.test_fwhm ... ok
test_calc.test_hlr ... ok
test_calc.test_sigma ... ok
test_catalog.test_basic_catalog ... ok
test_catalog.test_basic_dict ... ok
test_catalog.test_output_catalog ... ok
test_catalog.test_single_row ... ok
test_cdmodel.test_exampleimage ... ok
test_cdmodel.test_fluxconservation ... ok
test_cdmodel.test_forwardbackward ... ok
test_cdmodel.test_gainratio ... ok
test_cdmodel.test_simplegeometry ... ok
test_celestial.test_angle ... ok
test_celestial.test_celestialcoord_angleBetween ... ok
test_celestial.test_celestialcoord_basic ... ok
test_celestial.test_celestialcoord_distance ... ok
test_celestial.test_ecliptic ... ok
test_celestial.test_galactic ... ok
test_celestial.test_precess ... ok
test_celestial.test_projection ... ok
test_chromatic.test_ChromaticAiry ... ok
test_chromatic.test_ChromaticAutoConvolution ... ok
test_chromatic.test_ChromaticAutoCorrelation ... ok
test_chromatic.test_ChromaticConvolution_InterpolatedImage ... ok
test_chromatic.test_ChromaticConvolution_of_ChromaticConvolution ... ok
test_chromatic.test_ChromaticObject_compound_affine_transformation ... ok
test_chromatic.test_ChromaticObject_expand ... ok
test_chromatic.test_ChromaticObject_rotate ... ok
test_chromatic.test_ChromaticObject_shear ... ok
test_chromatic.test_ChromaticObject_shift ... ok
test_chromatic.test_ChromaticOpticalPSF ... ok
test_chromatic.test_analytic_integrator ... ok
test_chromatic.test_centroid ... ok
test_chromatic.test_chromatic_add ... ok
test_chromatic.test_chromatic_fiducial_wavelength ... ok
test_chromatic.test_chromatic_flux ... ok
test_chromatic.test_chromatic_image_setup ... ok
test_chromatic.test_chromatic_invariant ... ok
test_chromatic.test_chromatic_seeing_moments ... ok
test_chromatic.test_convolution_of_spectral ... ok
test_chromatic.test_dcr_moments ... ok
test_chromatic.test_double_ChromaticSum ... ok
test_chromatic.test_draw_add_commutativity ... ok
test_chromatic.test_gsparam ... ok
test_chromatic.test_interpolated_ChromaticObject ... ok
test_chromatic.test_monochromatic_filter ... ok
test_chromatic.test_ne ... ok
test_chromatic.test_separable_ChromaticSum ... ok
test_compound.test_add ... ok
test_compound.test_add_flux_scaling ... ok
test_compound.test_autoconvolve ... ok
test_compound.test_autocorrelate ... ok
test_compound.test_compound_noise ... ok
test_compound.test_convolve ... ok
test_compound.test_convolve_flux_scaling ... ok
test_compound.test_deconvolve ... ok
test_compound.test_fourier_sqrt ... ok
test_compound.test_ne ... ok
test_compound.test_realspace_convolve ... ok
test_compound.test_realspace_distorted_convolve ... ok
test_compound.test_realspace_shearconvolve ... ok
test_compound.test_shearconvolve ... ok
test_compound.test_sub_neg ... ok
test_compound.test_sum_transform ... ok
test_config_gsobject.test_add ... ok
test_config_gsobject.test_airy ... ok
test_config_gsobject.test_convolve ... ok
test_config_gsobject.test_cosmosgalaxy ... ok
test_config_gsobject.test_devaucouleurs ... ok
test_config_gsobject.test_exponential ... ok
test_config_gsobject.test_gaussian ... ok
test_config_gsobject.test_inclined_exponential ... ok
test_config_gsobject.test_inclined_sersic ... ok
test_config_gsobject.test_interpolated_image ... ok
test_config_gsobject.test_kolmogorov ... ok
test_config_gsobject.test_list ... ok
test_config_gsobject.test_moffat ... ok
test_config_gsobject.test_opticalpsf ... ok
test_config_gsobject.test_pixel ... ok
test_config_gsobject.test_realgalaxy ... ok
test_config_gsobject.test_repeat ... ok
test_config_gsobject.test_sersic ... ok
test_config_gsobject.test_usertype ... ok
test_config_image.test_index_key ... ok
test_config_image.test_multirng ... ok
test_config_image.test_njobs ... ok
test_config_image.test_phot ... ok
test_config_image.test_positions ... ok
test_config_image.test_reject ... ok
test_config_image.test_ring ... ok
test_config_image.test_scattered ... ok
test_config_image.test_scattered_whiten ... ok
test_config_image.test_single ... ok
test_config_image.test_snr ... ok
test_config_image.test_template ... ok
test_config_image.test_tiled ... ok
test_config_image.test_variable_cat_size ... ok
test_config_image.test_wcs ... ok
test_config_noise.test_ccdnoise ... ok
test_config_noise.test_ccdnoise_phot ... ok
test_config_noise.test_cosmosnoise ... ok
test_config_noise.test_gaussian ... ok
test_config_noise.test_poisson ... ok
test_config_noise.test_whiten ... ok
test_config_output.test_config ... ok
test_config_output.test_datacube ... ok
test_config_output.test_extra_psf ... ok
test_config_output.test_extra_truth ... ok
test_config_output.test_extra_wt ... ok
test_config_output.test_fits ... ok
test_config_output.test_multifits ... ok
test_config_output.test_no_output ... ok
test_config_output.test_retry_io ... ok
test_config_output.test_skip ... ok
test_config_value.test_angle_value ... ok
test_config_value.test_bool_value ... ok
test_config_value.test_eval ... ok
test_config_value.test_float_value ... ok
test_config_value.test_int_value ... ok
test_config_value.test_pos_value ... ok
test_config_value.test_shear_value ... ok
test_config_value.test_str_value ... ok
test_correlatednoise.test_arbitrary_rotation ... ok
test_correlatednoise.test_convolve_cosmos ... ok
test_correlatednoise.test_copy ... ok
test_correlatednoise.test_cosmos_and_whitening ... ok
test_correlatednoise.test_cosmos_wcs ... ok
test_correlatednoise.test_covariance_spectrum ... ok
test_correlatednoise.test_drawImage ... ok
test_correlatednoise.test_jacobian ... ok
test_correlatednoise.test_output_generation_basic ... ok
test_correlatednoise.test_output_generation_magnified ... ok
test_correlatednoise.test_output_generation_rotated ... ok
test_correlatednoise.test_scaling ... ok
test_correlatednoise.test_symmetrizing ... ok
test_correlatednoise.test_uncorrelated_noise_nonzero_lag ... ok
test_correlatednoise.test_uncorrelated_noise_output ... ok
test_correlatednoise.test_uncorrelated_noise_symmetry_90degree_rotation ... ok
test_correlatednoise.test_uncorrelated_noise_tracking ... ok
test_correlatednoise.test_uncorrelated_noise_zero_lag ... ok
test_correlatednoise.test_variance_changes ... ok
test_correlatednoise.test_xcorr_noise_basics_symmetry_90degree_rotation ... ok
test_correlatednoise.test_ycorr_noise_basics_symmetry_90degree_rotation ... ok
test_deprecated.test_dep_bandpass ... ok
test_deprecated.test_dep_base ... ok
test_deprecated.test_dep_bounds ... ok
test_deprecated.test_dep_chromatic ... ok
test_deprecated.test_dep_correlatednoise ... ok
test_deprecated.test_dep_drawKImage ... ok
test_deprecated.test_dep_drawKImage_Gaussian ... ok
test_deprecated.test_dep_ecliptic ... ok
test_deprecated.test_dep_gsobject_ring ... ok
test_deprecated.test_dep_image ... ok
test_deprecated.test_dep_interp ... ok
test_deprecated.test_dep_kroundtrip ... ok
test_deprecated.test_dep_noise ... ok
test_deprecated.test_dep_optics ... ok
test_deprecated.test_dep_phase_psf ... ok
test_deprecated.test_dep_photon_array ... ok
test_deprecated.test_dep_random ... ok
test_deprecated.test_dep_scene ... ok
test_deprecated.test_dep_sed ... ok
test_deprecated.test_dep_shapelet ... ok
test_deprecated.test_dep_shapelet_fit ... ok
test_deprecated.test_dep_shear ... ok
test_deprecated.test_dep_simreal ... ok
test_deprecated.test_dep_table ... ok
test_deprecated.test_dep_wmult ... ok
test_des.test_meds ... ok
test_des.test_meds_config ... ok
test_des.test_nan_fits ... ok
test_des.test_psf ... ok
test_des.test_psf_config ... ok
test_detectors.test_IPC_basic ... /usr/lib/python2.7/site-packages/scipy/spatial/__init__.py:95: ImportWarning: Not importing directory '/usr/lib/python2.7/site-packages/scipy/spatial/qhull': missing __init__.py
from .qhull import *
ok
test_detectors.test_Persistence_basic ... ok
test_detectors.test_nonlinearity_basic ... ok
test_detectors.test_quantize ... ok
test_detectors.test_recipfail_basic ... ok
test_draw.test_direct_scale ... ok
test_draw.test_drawImage ... ok
test_draw.test_drawImage_area_exptime ... ok
test_draw.test_drawKImage ... ok
test_draw.test_drawKImage_Exponential_Moffat ... ok
test_draw.test_drawKImage_Gaussian ... ok
test_draw.test_draw_methods ... ok
test_draw.test_fft ... ok
test_draw.test_np_fft ... ok
test_draw.test_offset ... ok
test_draw.test_types ... ok
test_draw.test_shoot ... ok
test_fitsheader.test_dict ... ok
test_fitsheader.test_read ... ok
test_fitsheader.test_scamp ... ok
test_hsm.test_bounds_centroid ... ok
test_hsm.test_hsmparams ... ok
test_hsm.test_hsmparams_nodefault ... ok
test_hsm.test_ksb_sig ... ok
test_hsm.test_masks ... ok
test_hsm.test_moments_basic ... ok
test_hsm.test_noncontiguous ... ok
test_hsm.test_shapedata ... ok
test_hsm.test_shearest_basic ... ok
test_hsm.test_shearest_precomputed ... ok
test_hsm.test_shearest_shape ... ok
test_hsm.test_strict ... ok
test_image.test_BoundsI_init_with_non_pure_ints ... ok
test_image.test_ConstImage_array_constness ... ok
test_image.test_FITS_bad_type ... ok
test_image.test_Image_CubeFITS_IO ... ok
test_image.test_Image_FITS_IO ... ok
test_image.test_Image_MultiFITS_IO ... ok
test_image.test_Image_array_view ... ok
test_image.test_Image_basic ... ok
test_image.test_Image_binary_add ... ok
test_image.test_Image_binary_divide ... ok
test_image.test_Image_binary_multiply ... ok
test_image.test_Image_binary_scalar_add ... ok
test_image.test_Image_binary_scalar_divide ... ok
test_image.test_Image_binary_scalar_multiply ... ok
test_image.test_Image_binary_scalar_pow ... ok
test_image.test_Image_binary_scalar_subtract ... ok
test_image.test_Image_binary_subtract ... ok
test_image.test_Image_constructor ... ok
test_image.test_Image_inplace_add ... ok
test_image.test_Image_inplace_divide ... ok
test_image.test_Image_inplace_multiply ... ok
test_image.test_Image_inplace_scalar_add ... ok
test_image.test_Image_inplace_scalar_divide ... ok
test_image.test_Image_inplace_scalar_multiply ... ok
test_image.test_Image_inplace_scalar_pow ... ok
test_image.test_Image_inplace_scalar_subtract ... ok
test_image.test_Image_inplace_subtract ... ok
test_image.test_Image_resize ... ok
test_image.test_Image_subImage ... ok
test_image.test_Image_view ... ok
test_image.test_Image_writeheader ... ok
test_image.test_bin ... ok
test_image.test_complex_image ... ok
test_image.test_complex_image_arith ... ok
test_image.test_copy ... ok
test_image.test_int_image_arith ... ok
test_image.test_ne ... ok
test_image.test_subImage_persistence ... ok
test_image.test_undefined_image ... ok
test_image.test_wrap ... ok
test_inclined_exponential.test_edge_on ... ok
test_inclined_exponential.test_eq_ne ... ok
test_inclined_exponential.test_exceptions ... ok
test_inclined_exponential.test_exponential ... ok
test_inclined_exponential.test_k_limits ... ok
test_inclined_exponential.test_pickle ... ok
test_inclined_exponential.test_regression ... ok
test_inclined_exponential.test_sanity ... ok
test_inclined_exponential.test_sersic ... ok
test_inclined_exponential.test_value_retrieval ... ok
test_integ.test_gaussian_finite_limits ... ok
test_integ.test_gaussian_infinite_limits ... ok
test_integ.test_invroot_finite_limits ... ok
test_integ.test_invroot_infinite_limits ... ok
test_integ.test_midpoint_basic ... ok
test_integ.test_sinxsqexpabsx_finite_limits ... ok
test_integ.test_sinxsqexpabsx_infinite_limits ... ok
test_integ.test_trapz_basic ... ok
test_interpolatedimage.test_Cubic_ref ... ok
test_interpolatedimage.test_Lanczos5_ref ... ok
test_interpolatedimage.test_Lanczos7_ref ... ok
test_interpolatedimage.test_Quintic_ref ... ok
test_interpolatedimage.test_conserve_dc ... ok
test_interpolatedimage.test_corr_padding ... ok
test_interpolatedimage.test_exceptions ... ok
test_interpolatedimage.test_fluxnorm ... ok
test_interpolatedimage.test_kroundtrip ... ok
test_interpolatedimage.test_multihdu_readin ... ok
test_interpolatedimage.test_ne ... ok
test_interpolatedimage.test_operations ... ok
test_interpolatedimage.test_operations_simple ... ok
test_interpolatedimage.test_pad_image ... ok
test_interpolatedimage.test_realspace_conv ... ok
test_interpolatedimage.test_roundtrip ... ok
test_interpolatedimage.test_stepk_maxk ... ok
test_interpolatedimage.test_uncorr_padding ... ok
test_lensing.test_bandlimit ... ok
test_lensing.test_corr_func ... ok
test_lensing.test_cosmology ... ok
test_lensing.test_kappa_gauss ... ok
test_lensing.test_nfwhalo ... ok
test_lensing.test_normalization ... ok
test_lensing.test_periodic ... ok
test_lensing.test_power_spectrum_with_kappa ... ok
test_lensing.test_psr ... ok
test_lensing.test_shear_get ... ok
test_lensing.test_shear_reference ... ok
test_lensing.test_shear_seeds ... ok
test_lensing.test_shear_units ... ok
test_lensing.test_shear_variance ... ok
test_lensing.test_tabulated ... ok
test_attribute_exceptions (test_lsst.LsstCameraTestClass) ... SKIP: LSST stack not installed
test_pupil_coordinates (test_lsst.LsstCameraTestClass) ... SKIP: LSST stack not installed
test_pupil_coordinates_from_floats (test_lsst.LsstCameraTestClass) ... SKIP: LSST stack not installed
test_pupil_coords_from_pixel_coords (test_lsst.LsstCameraTestClass) ... SKIP: LSST stack not installed
test_ra_dec_from_pupil_coords (test_lsst.LsstCameraTestClass) ... SKIP: LSST stack not installed
test_rotation_angle_pixel_coordinate_convention (test_lsst.LsstCameraTestClass) ... SKIP: LSST stack not installed
test_rotation_angle_pupil_coordinate_convention (test_lsst.LsstCameraTestClass) ... SKIP: LSST stack not installed
test_attribute_exceptions (test_lsst.LsstWcsTestCase) ... SKIP: LSST stack not installed
test_constructor (test_lsst.LsstWcsTestCase) ... SKIP: LSST stack not installed
test_copy (test_lsst.LsstWcsTestCase) ... SKIP: LSST stack not installed
test_eq (test_lsst.LsstWcsTestCase) ... SKIP: LSST stack not installed
test_passing_camera_by_hand (test_lsst.LsstWcsTestCase) ... SKIP: LSST stack not installed
test_pickling (test_lsst.LsstWcsTestCase) ... SKIP: LSST stack not installed
test_round_trip (test_lsst.LsstWcsTestCase) ... SKIP: LSST stack not installed
test_tan_sip_wcs (test_lsst.LsstWcsTestCase) ... SKIP: LSST stack not installed
test_tan_wcs (test_lsst.LsstWcsTestCase) ... SKIP: LSST stack not installed
testNativeLonLat (test_lsst.NativeLonLatTest) ... SKIP: LSST stack not installed
testNativeLonLatVector (test_lsst.NativeLonLatTest) ... SKIP: LSST stack not installed
testNativeLongLatComplicated (test_lsst.NativeLonLatTest) ... SKIP: LSST stack not installed
test_metacal.test_metacal_tracking ... ok
test_metacal.test_wcs ... ok
test_optics.test_OpticalPSF_aberrations_kwargs ... ok
test_optics.test_OpticalPSF_aberrations_struts ... ok
test_optics.test_OpticalPSF_aper ... ok
test_optics.test_OpticalPSF_flux ... ok
test_optics.test_OpticalPSF_flux_scaling ... ok
test_optics.test_OpticalPSF_lamdiam ... ok
test_optics.test_OpticalPSF_pupil_plane ... ok
test_optics.test_OpticalPSF_pupil_plane_size ... ok
test_optics.test_OpticalPSF_vs_Airy ... ok
test_optics.test_OpticalPSF_vs_Airy_with_obs ... ok
test_optics.test_Zernike_orthonormality ... ok
test_optics.test_annular_Zernike_limit ... ok
test_optics.test_geometric_shoot ... ok
test_optics.test_ne ... ok
test_optics.test_noll ... ok
test_optics.test_stepk_maxk_iipad ... ok
test_phase_psf.test_aperture ... ok
test_phase_psf.test_atm_screen_size ... ok
test_phase_psf.test_frozen_flow ... ok
test_phase_psf.test_input ... ok
test_phase_psf.test_ne ... ok
test_phase_psf.test_opt_indiv_aberrations ... ok
test_phase_psf.test_phase_gradient_shoot ... ok
test_phase_psf.test_phase_psf_batch ... ok
test_phase_psf.test_phase_psf_reset ... ok
test_phase_psf.test_phase_screen_list ... ok
test_phase_psf.test_r0_weights ... ok
test_phase_psf.test_scale_unit ... ok
test_phase_psf.test_speedup ... ok
test_phase_psf.test_stepk_maxk ... ok
test_phase_psf.test_structure_function ... ok
test_photon_array.test_photon_angles ... ok
test_photon_array.test_photon_array ... ok
test_photon_array.test_photon_io ... ok
test_photon_array.test_wavelength_sampler ... ok
test_pse.test_PSE_basic ... ok
test_random.test_addnoisesnr ... ok
test_random.test_binomial ... ok
test_random.test_ccdnoise ... ok
test_random.test_chi2 ... ok
test_random.test_distLookupTable ... ok
test_random.test_distfunction ... ok
test_random.test_gamma ... ok
test_random.test_gaussian ... ok
test_random.test_multiprocess ... ok
test_random.test_ne ... ok
test_random.test_permute ... ok
test_random.test_poisson ... ok
test_random.test_poisson_highmean ... ok
test_random.test_uniform ... ok
test_random.test_variable_gaussian_noise ... ok
test_random.test_weibull ... ok
test_randwalk.test_randwalk_config ... ok
test_randwalk.test_randwalk_defaults ... ok
test_randwalk.test_randwalk_hlr ... ok
test_randwalk.test_randwalk_invalid_inputs ... ok
test_randwalk.test_randwalk_repr ... ok
test_randwalk.test_randwalk_valid_inputs ... ok
test_real.test_area_norm ... ok
test_real.test_crg_noise ... ok
test_real.test_crg_noise_draw_transform_commutativity ... ok
test_real.test_crg_noise_pad ... ok
test_real.test_crg_roundtrip ... ok
test_real.test_crg_roundtrip_larger_target_psf ... ok
test_real.test_ne ... ok
test_real.test_noise ... ok
test_real.test_pickle_crg ... ok
test_real.test_real_galaxy_ideal ... ok
test_real.test_real_galaxy_makeFromImage ... ok
test_real.test_real_galaxy_saved ... ok
test_scene.test_cosmos_basic ... ok
test_scene.test_cosmos_fluxnorm ... ok
test_scene.test_cosmos_random ... ok
test_sed.test_SED_add ... ok
test_sed.test_SED_atRedshift ... ok
test_sed.test_SED_basic ... ok
test_sed.test_SED_calculateDCRMomentShifts ... ok
test_sed.test_SED_calculateMagnitude ... ok
test_sed.test_SED_calculateSeeingMomentRatio ... ok
test_sed.test_SED_div ... ok
test_sed.test_SED_init ... ok
test_sed.test_SED_mul ... ok
test_sed.test_SED_roundoff_guard ... ok
test_sed.test_SED_sampleWavelength ... ok
test_sed.test_SED_sub ... ok
test_sed.test_SED_withFlux ... ok
test_sed.test_SED_withFluxDensity ... ok
test_sed.test_combine_wave_list ... ok
test_sed.test_fnu_vs_flambda ... ok
test_sed.test_ne ... ok
test_sed.test_redshift_calculateFlux ... ok
test_sed.test_thin ... ok
test_sensor.test_bf_slopes ... ok
test_sensor.test_sensor_wavelengths_and_angles ... ok
test_sensor.test_silicon ... ok
test_sensor.test_silicon_fft ... ok
test_sensor.test_simple ... ok
test_sensor.test_treerings ... ok
test_shapelet.test_ne ... ok
test_shapelet.test_shapelet_adjustments ... ok
test_shapelet.test_shapelet_drawImage ... ok
test_shapelet.test_shapelet_fit ... ok
test_shapelet.test_shapelet_gaussian ... ok
test_shapelet.test_shapelet_properties ... ok
test_shear.test_shear_initialization ... ok
test_shear.test_shear_matrix ... ok
test_shear.test_shear_methods ... ok
test_table.test_from_func ... ok
test_table.test_init ... ok
test_table.test_log ... ok
test_table.test_ne ... ok
test_table.test_roundoff ... ok
test_table.test_table ... ok
test_table.test_table2d ... ok
test_table.test_table2d_gradient ... ok
test_transforms.test_compound ... ok
test_transforms.test_flip ... ok
test_transforms.test_integer_shift_fft ... ok
test_transforms.test_integer_shift_photon ... ok
test_transforms.test_largeshear ... ok
test_transforms.test_lens ... ok
test_transforms.test_mag ... ok
test_transforms.test_ne ... ok
test_transforms.test_rescale ... ok
test_transforms.test_rotate ... ok
test_transforms.test_shift ... ok
test_transforms.test_smallshear ... ok
test_utilities.test_check_all_contiguous ... ok
test_utilities.test_deInterleaveImage ... ok
test_utilities.test_interleaveImages ... ok
test_utilities.test_kxky ... ok
test_utilities.test_kxky_plusone ... ok
test_utilities.test_position_type_promotion ... ok
test_utilities.test_python_LRU_Cache ... ok
test_utilities.test_rand_with_replacement ... ok
test_utilities.test_roll2d_circularity ... ok
test_utilities.test_roll2d_fwdbck ... ok
test_utilities.test_roll2d_join ... ok
test_utilities.test_unweighted_moments ... ok
test_utilities.test_dol_to_lod ... ok
test_wcs.test_affinetransform ... ok
test_wcs.test_astropywcs ... ok
test_wcs.test_coadd ... ok
test_wcs.test_compateq ... ok
test_wcs.test_fitswcs ... ok
test_wcs.test_gsfitswcs ... ok
test_wcs.test_pixelscale ... ok
test_wcs.test_pyastwcs ... ok
test_wcs.test_radecfunction ... ok
test_wcs.test_scamp ... ok
test_wcs.test_shearwcs ... ok
test_wcs.test_uvfunction ... ok
test_wcs.test_wcstools ... ok
test_wfirst.test_wfirst_backgrounds ... ok
test_wfirst.test_wfirst_bandpass ... ok
test_wfirst.test_wfirst_basic_numbers ... ok
test_wfirst.test_wfirst_detectors ... ok
test_wfirst.test_wfirst_psfs ... ok
test_wfirst.test_wfirst_wcs ... ok
----------------------------------------------------------------------
Ran 527 tests in 350.417s
OK (SKIP=19)
==> Entering fakeroot environment...
==> Starting package_python-galsim-git()...
scons: Reading SConscript files ...
SCons is version 3.0.1 using python version 2.7.14
Python is from /usr/include/python2.7
Using the following (non-default) scons options:
PYTHON = python
PREFIX = /data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr
FINAL_PREFIX = /usr
TMV_DIR = /usr
These can be edited directly in the file gs_scons.conf.
Type scons -h for a full list of available options.
Using python = /usr/bin/python
Using PYPREFIX generated from PREFIX = /data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages
Using compiler: /usr/bin/g++
compiler version: 7.2.1
Determined that a good number of jobs = 8
Using SSE with flag -msse2
Checking for C++ header file fftw3.h... (cached) yes
Checking for correct FFTW linkage... (cached) yes
Checking for boost header files... (cached) yes
Boost version is 1.65.1
Checking for C++ header file TMV.h... (cached) yes
TMV version is 0.75
Using TMV_LINK file: /usr/share/tmv/tmv-link
-L/usr/lib -ltmv -lcblas -lpthread -fopenmp
Checking for correct TMV linkage... (this may take a little while)
Checking for correct TMV linkage... (cached) yes
Checking if we can build against Python... (cached) yes
Building for python version 3.6
Checking if we can build module using TMV... (cached) yes
Checking if we can build against NumPy... (cached) yes
Numpy version is 1.13.3
Checking for PyFITS... (cached) yes
Astropy version is 2.0.2
Checking for future... (cached) yes
Future version is 0.16.0
Checking if we can build against Boost.Python... (cached) yes
Checking if C++ exceptions are propagated up to python... (cached) yes
GalSim version 1.5.1
scons: done reading SConscript files.
scons: Building targets ...
Install file: "lib/libgalsim.so.1.5" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/libgalsim.so.1.5"
BuildExecutableScript(["bin/galsim"], ["bin/galsim.py"])
BuildExecutableScript(["bin/galsim_yaml"], ["bin/galsim_yaml.py"])
BuildExecutableScript(["bin/galsim_json"], ["bin/galsim_json.py"])
BuildExecutableScript(["bin/galsim_download_cosmos"], ["bin/galsim_download_cosmos.py"])
g++ -o galsim/_galsim.so -fopenmp -pthread -shared -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -Wl,-rpath=/usr/lib pysrc/.obj/module.os pysrc/.obj/Angle.os pysrc/.obj/Bounds.os pysrc/.obj/PhotonArray.os pysrc/.obj/Image.os pysrc/.obj/SBProfile.os pysrc/.obj/SBAdd.os pysrc/.obj/SBConvolve.os pysrc/.obj/SBDeconvolve.os pysrc/.obj/SBFourierSqrt.os pysrc/.obj/SBTransform.os pysrc/.obj/SBBox.os pysrc/.obj/SBGaussian.os pysrc/.obj/SBDeltaFunction.os pysrc/.obj/SBExponential.os pysrc/.obj/SBSersic.os pysrc/.obj/SBMoffat.os pysrc/.obj/SBAiry.os pysrc/.obj/SBShapelet.os pysrc/.obj/SBInterpolatedImage.os pysrc/.obj/SBKolmogorov.os pysrc/.obj/SBSpergel.os pysrc/.obj/SBInclinedExponential.os pysrc/.obj/SBInclinedSersic.os pysrc/.obj/Random.os pysrc/.obj/Noise.os pysrc/.obj/HSM.os pysrc/.obj/Integ.os pysrc/.obj/Table.os pysrc/.obj/Interpolant.os pysrc/.obj/CorrelatedNoise.os pysrc/.obj/Bessel.os pysrc/.obj/CDModel.os pysrc/.obj/Silicon.os pysrc/.obj/RealGalaxy.os pysrc/.obj/WCS.os -Llib -L/usr/lib -lboost_python3 -ltmv_symband -lfftw3 -lpthread -ltmv -lcblas -lpthread -lgalsim
Install file: "share/wfirst_sky_backgrounds.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/wfirst_sky_backgrounds.txt"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA05.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA05.txt"
Install file: "bin/galsim_download_cosmos" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/bin/galsim_download_cosmos"
Install file: "bin/galsim_json" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/bin/galsim_json"
Install file: "bin/galsim_yaml" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/bin/galsim_yaml"
SymLink(["/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/libgalsim.so"], ["/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/libgalsim.so.1.5"])
Install file: "bin/galsim" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/bin/galsim"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA12.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA12.txt"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA17.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA17.txt"
Install file: "share/WFIRST-AFTA_Pupil_Mask_C5_20141010_PLT.fits.gz" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/WFIRST-AFTA_Pupil_Mask_C5_20141010_PLT.fits.gz"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA15.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA15.txt"
Install file: "share/acs_I_unrot_sci_20_cf.fits" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/acs_I_unrot_sci_20_cf.fits"
Install file: "share/sip_422.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/sip_422.txt"
Install file: "share/afta_throughput.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/afta_throughput.txt"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA10.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA10.txt"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA03.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA03.txt"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA09.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA09.txt"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA01.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA01.txt"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA11.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA11.txt"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA06.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA06.txt"
Install directory: "share/sensors" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/sensors"
Install file: "share/sensors/abs_length.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/sensors/abs_length.dat"
Install file: "share/sensors/lsst_e2v_32.cfg" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/sensors/lsst_e2v_32.cfg"
Install file: "share/sensors/lsst_e2v_32.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/sensors/lsst_e2v_32.dat"
Install file: "share/sensors/lsst_itl_32.cfg" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/sensors/lsst_itl_32.cfg"
Install file: "share/sensors/lsst_itl_32.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/sensors/lsst_itl_32.dat"
Install file: "share/sensors/lsst_itl_8.cfg" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/sensors/lsst_itl_8.cfg"
Install file: "share/sensors/lsst_itl_8.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/sensors/lsst_itl_8.dat"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA07.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA07.txt"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA08.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA08.txt"
Install directory: "share/SEDs" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/SEDs"
Install file: "share/SEDs/CWW_E_ext.sed" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/SEDs/CWW_E_ext.sed"
Install file: "share/SEDs/CWW_E_ext_more.sed" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/SEDs/CWW_E_ext_more.sed"
Install file: "share/SEDs/CWW_Im_ext.sed" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/SEDs/CWW_Im_ext.sed"
Install file: "share/SEDs/CWW_Im_ext_more.sed" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/SEDs/CWW_Im_ext_more.sed"
Install file: "share/SEDs/CWW_Sbc_ext.sed" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/SEDs/CWW_Sbc_ext.sed"
Install file: "share/SEDs/CWW_Sbc_ext_more.sed" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/SEDs/CWW_Sbc_ext_more.sed"
Install file: "share/SEDs/CWW_Scd_ext.sed" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/SEDs/CWW_Scd_ext.sed"
Install file: "share/SEDs/CWW_Scd_ext_more.sed" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/SEDs/CWW_Scd_ext_more.sed"
Install file: "share/SEDs/README.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/SEDs/README.txt"
Install file: "share/SEDs/vega.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/SEDs/vega.txt"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA13.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA13.txt"
Install directory: "share/bandpasses" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/bandpasses"
Install file: "share/bandpasses/ACS_wfc_F435W.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/bandpasses/ACS_wfc_F435W.dat"
Install file: "share/bandpasses/ACS_wfc_F606W.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/bandpasses/ACS_wfc_F606W.dat"
Install file: "share/bandpasses/ACS_wfc_F775W.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/bandpasses/ACS_wfc_F775W.dat"
Install file: "share/bandpasses/ACS_wfc_F814W.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/bandpasses/ACS_wfc_F814W.dat"
Install file: "share/bandpasses/ACS_wfc_F850LP.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/bandpasses/ACS_wfc_F850LP.dat"
Install file: "share/bandpasses/LSST_g.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/bandpasses/LSST_g.dat"
Install file: "share/bandpasses/LSST_i.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/bandpasses/LSST_i.dat"
Install file: "share/bandpasses/LSST_r.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/bandpasses/LSST_r.dat"
Install file: "share/bandpasses/LSST_u.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/bandpasses/LSST_u.dat"
Install file: "share/bandpasses/LSST_y.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/bandpasses/LSST_y.dat"
Install file: "share/bandpasses/LSST_z.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/bandpasses/LSST_z.dat"
Install file: "share/bandpasses/README.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/bandpasses/README.txt"
Install file: "share/bandpasses/WFC3_ir_F105W.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/bandpasses/WFC3_ir_F105W.dat"
Install file: "share/bandpasses/WFC3_ir_F125W.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/bandpasses/WFC3_ir_F125W.dat"
Install file: "share/bandpasses/WFC3_ir_F160W.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/bandpasses/WFC3_ir_F160W.dat"
Install file: "share/bandpasses/WFC3_uvis_F275W.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/bandpasses/WFC3_uvis_F275W.dat"
Install file: "share/bandpasses/WFC3_uvis_F336W.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/bandpasses/WFC3_uvis_F336W.dat"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA16.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA16.txt"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA04.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA04.txt"
Install file: "share/wfc_F814W.dat.gz" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/wfc_F814W.dat.gz"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA14.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA14.txt"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA18.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA18.txt"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA02.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA02.txt"
Install file: "galsim/fft.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/fft.py"
Install file: "galsim/gsobject.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/gsobject.py"
Install file: "galsim/gsparams.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/gsparams.py"
Install file: "galsim/lensing_ps.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/lensing_ps.py"
Install file: "galsim/interpolatedimage.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/interpolatedimage.py"
Install file: "galsim/celestial.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/celestial.py"
Install file: "galsim/scene.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/scene.py"
Install file: "galsim/fitswcs.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/fitswcs.py"
Install file: "galsim/integ.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/integ.py"
Install file: "galsim/_pyfits.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/_pyfits.py"
Install file: "galsim/photon_array.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/photon_array.py"
Install file: "galsim/phase_screens.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/phase_screens.py"
Install file: "galsim/hsm.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/hsm.py"
Install file: "galsim/sed.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/sed.py"
Install file: "galsim/image.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/image.py"
Install file: "galsim/shapelet.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/shapelet.py"
Install file: "galsim/pse.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/pse.py"
Install file: "galsim/sensor.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/sensor.py"
Install file: "galsim/chromatic.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/chromatic.py"
Install file: "galsim/nfw_halo.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/nfw_halo.py"
Install file: "galsim/phase_psf.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/phase_psf.py"
Install file: "galsim/noise.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/noise.py"
Install file: "galsim/catalog.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/catalog.py"
Install file: "galsim/_version.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/_version.py"
Install file: "galsim/table.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/table.py"
Install file: "galsim/position.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/position.py"
Install file: "galsim/random.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/random.py"
Install file: "galsim/bessel.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/bessel.py"
Install file: "galsim/utilities.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/utilities.py"
Install file: "galsim/base.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/base.py"
Install file: "galsim/compound.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/compound.py"
Install file: "galsim/__init__.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/__init__.py"
Install file: "galsim/fits.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/fits.py"
Install file: "galsim/optics.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/optics.py"
Install file: "galsim/transform.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/transform.py"
Install file: "galsim/shear.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/shear.py"
Install file: "galsim/dcr.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/dcr.py"
Install file: "galsim/bandpass.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/bandpass.py"
Install file: "galsim/bounds.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/bounds.py"
Install file: "galsim/real.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/real.py"
Install file: "galsim/inclinedexponential.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/inclinedexponential.py"
Install file: "galsim/angle.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/angle.py"
Install file: "galsim/detectors.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/detectors.py"
Install file: "galsim/meta_data.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/meta_data.py"
Install file: "galsim/cdmodel.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/cdmodel.py"
Install file: "galsim/inclinedsersic.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/inclinedsersic.py"
Install file: "galsim/correlatednoise.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/correlatednoise.py"
Install file: "galsim/fds_test.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/fds_test.py"
Install file: "galsim/wcs.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/wcs.py"
Install file: "galsim/config/value.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/config/value.py"
Install file: "galsim/config/output_multifits.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/config/output_multifits.py"
Install file: "galsim/config/gsobject.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/config/gsobject.py"
Install file: "galsim/config/stamp_ring.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/config/stamp_ring.py"
Install file: "galsim/config/extra_psf.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/config/extra_psf.py"
Install file: "galsim/config/input_real.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/config/input_real.py"
Install file: "galsim/config/value_random.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/config/value_random.py"
Install file: "galsim/config/extra.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/config/extra.py"
Install file: "galsim/config/stamp.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/config/stamp.py"
Install file: "galsim/config/value_eval.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/config/value_eval.py"
Install file: "galsim/config/output_datacube.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/config/output_datacube.py"
Install file: "galsim/config/image.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/config/image.py"
Install file: "galsim/config/image_tiled.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/config/image_tiled.py"
Install file: "galsim/config/image_scattered.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/config/image_scattered.py"
Install file: "galsim/config/process.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/config/process.py"
Install file: "galsim/config/extra_weight.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/config/extra_weight.py"
Install file: "galsim/config/extra_badpix.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/config/extra_badpix.py"
Install file: "galsim/config/input.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/config/input.py"
Install file: "galsim/config/noise.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/config/noise.py"
Install file: "galsim/config/input_cosmos.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/config/input_cosmos.py"
Install file: "galsim/config/input_powerspectrum.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/config/input_powerspectrum.py"
Install file: "galsim/config/output.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/config/output.py"
Install file: "galsim/config/input_fitsheader.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/config/input_fitsheader.py"
Install file: "galsim/config/__init__.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/config/__init__.py"
Install file: "galsim/config/input_nfw.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/config/input_nfw.py"
Install file: "galsim/config/extra_truth.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/config/extra_truth.py"
Install file: "galsim/config/wcs.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/config/wcs.py"
Install file: "galsim/des/des_psfex.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/des/des_psfex.py"
Install file: "galsim/des/des_shapelet.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/des/des_shapelet.py"
Install file: "galsim/des/__init__.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/des/__init__.py"
Install file: "galsim/des/des_meds.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/des/des_meds.py"
Install file: "galsim/deprecated/interpolatedimage.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/deprecated/interpolatedimage.py"
Install file: "galsim/deprecated/photon_array.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/deprecated/photon_array.py"
Install file: "galsim/deprecated/sed.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/deprecated/sed.py"
Install file: "galsim/deprecated/image.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/deprecated/image.py"
Install file: "galsim/deprecated/shapelet.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/deprecated/shapelet.py"
Install file: "galsim/deprecated/gsobject_ring.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/deprecated/gsobject_ring.py"
Install file: "galsim/deprecated/chromatic.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/deprecated/chromatic.py"
Install file: "galsim/deprecated/noise.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/deprecated/noise.py"
Install file: "galsim/deprecated/random.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/deprecated/random.py"
Install file: "galsim/deprecated/base.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/deprecated/base.py"
Install file: "galsim/deprecated/__init__.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py"
Install file: "galsim/deprecated/optics.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/deprecated/optics.py"
Install file: "galsim/deprecated/shear.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/deprecated/shear.py"
Install file: "galsim/deprecated/bandpass.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/deprecated/bandpass.py"
Install file: "galsim/deprecated/bounds.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/deprecated/bounds.py"
Install file: "galsim/deprecated/angle.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/deprecated/angle.py"
Install file: "galsim/deprecated/correlatednoise.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/deprecated/correlatednoise.py"
Install file: "galsim/wfirst/wfirst_psfs.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/wfirst/wfirst_psfs.py"
Install file: "galsim/wfirst/wfirst_bandpass.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/wfirst/wfirst_bandpass.py"
Install file: "galsim/wfirst/wfirst_backgrounds.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/wfirst/wfirst_backgrounds.py"
Install file: "galsim/wfirst/__init__.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/wfirst/__init__.py"
Install file: "galsim/wfirst/wfirst_detectors.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/wfirst/wfirst_detectors.py"
Install file: "galsim/wfirst/wfirst_wcs.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/wfirst/wfirst_wcs.py"
Install file: "galsim/lsst/lsst_wcs.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/lsst/lsst_wcs.py"
Install file: "galsim/lsst/__init__.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/lsst/__init__.py"
BuildExecutableScript(["bin/installed_python"], ["bin/installed_python.py"])
Install file: "galsim/_galsim.so" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python-galsim-git/usr/lib/python3.6/site-packages/galsim/_galsim.so"
CheckPyPrefix(["check"], [])
FinalMessages(["final"], [])
scons: done building targets.
==> Tidying install...
-> Removing libtool files...
-> Purging unwanted files...
-> Removing static library files...
-> Stripping unneeded symbols from binaries and libraries...
-> Compressing man and info pages...
==> Checking for packaging issue...
==> Creating package "python-galsim-git"...
-> Generating .PKGINFO file...
-> Generating .BUILDINFO file...
-> Generating .MTREE file...
-> Compressing package...
==> Starting package_python2-galsim-git()...
scons: Reading SConscript files ...
SCons is version 3.0.1 using python version 2.7.14
Python is from /usr/include/python2.7
Using the following (non-default) scons options:
PYTHON = python2
PREFIX = /data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr
FINAL_PREFIX = /usr
TMV_DIR = /usr
These can be edited directly in the file gs_scons.conf.
Type scons -h for a full list of available options.
Using python = /usr/bin/python2
Using PYPREFIX generated from PREFIX = /data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages
Using compiler: /usr/bin/g++
compiler version: 7.2.1
Determined that a good number of jobs = 8
Using SSE with flag -msse2
Checking for C++ header file fftw3.h... (cached) yes
Checking for correct FFTW linkage... (cached) yes
Checking for boost header files... (cached) yes
Boost version is 1.65.1
Checking for C++ header file TMV.h... (cached) yes
TMV version is 0.75
Using TMV_LINK file: /usr/share/tmv/tmv-link
-L/usr/lib -ltmv -lcblas -lpthread -fopenmp
Checking for correct TMV linkage... (this may take a little while)
Checking for correct TMV linkage... (cached) yes
Checking if we can build against Python... (cached) yes
Building for python version 2.7
Checking if we can build module using TMV... (cached) yes
Checking if we can build against NumPy... (cached) yes
Numpy version is 1.13.3
Checking for PyFITS... (cached) yes
Astropy version is 2.0.2
Checking for future... (cached) yes
Future version is 0.16.0
Checking if we can build against Boost.Python... (cached) yes
Checking if C++ exceptions are propagated up to python... (cached) yes
GalSim version 1.5.1
scons: done reading SConscript files.
scons: Building targets ...
Install file: "lib/libgalsim.so.1.5" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/libgalsim.so.1.5"
BuildExecutableScript(["bin/galsim"], ["bin/galsim.py"])
BuildExecutableScript(["bin/galsim_yaml"], ["bin/galsim_yaml.py"])
BuildExecutableScript(["bin/galsim_json"], ["bin/galsim_json.py"])
BuildExecutableScript(["bin/galsim_download_cosmos"], ["bin/galsim_download_cosmos.py"])
Install file: "share/wfirst_sky_backgrounds.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/wfirst_sky_backgrounds.txt"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA05.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA05.txt"
g++ -o galsim/_galsim.so -fopenmp -pthread -shared -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -Wl,-rpath=/usr/lib pysrc/.obj/module.os pysrc/.obj/Angle.os pysrc/.obj/Bounds.os pysrc/.obj/PhotonArray.os pysrc/.obj/Image.os pysrc/.obj/SBProfile.os pysrc/.obj/SBAdd.os pysrc/.obj/SBConvolve.os pysrc/.obj/SBDeconvolve.os pysrc/.obj/SBFourierSqrt.os pysrc/.obj/SBTransform.os pysrc/.obj/SBBox.os pysrc/.obj/SBGaussian.os pysrc/.obj/SBDeltaFunction.os pysrc/.obj/SBExponential.os pysrc/.obj/SBSersic.os pysrc/.obj/SBMoffat.os pysrc/.obj/SBAiry.os pysrc/.obj/SBShapelet.os pysrc/.obj/SBInterpolatedImage.os pysrc/.obj/SBKolmogorov.os pysrc/.obj/SBSpergel.os pysrc/.obj/SBInclinedExponential.os pysrc/.obj/SBInclinedSersic.os pysrc/.obj/Random.os pysrc/.obj/Noise.os pysrc/.obj/HSM.os pysrc/.obj/Integ.os pysrc/.obj/Table.os pysrc/.obj/Interpolant.os pysrc/.obj/CorrelatedNoise.os pysrc/.obj/Bessel.os pysrc/.obj/CDModel.os pysrc/.obj/Silicon.os pysrc/.obj/RealGalaxy.os pysrc/.obj/WCS.os -Llib -L/usr/lib -lboost_python -ltmv_symband -lfftw3 -lpthread -ltmv -lcblas -lpthread -lgalsim
Install file: "bin/galsim_download_cosmos" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/bin/galsim_download_cosmos"
Install file: "bin/galsim_json" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/bin/galsim_json"
Install file: "bin/galsim_yaml" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/bin/galsim_yaml"
Install file: "bin/galsim" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/bin/galsim"
SymLink(["/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/libgalsim.so"], ["/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/libgalsim.so.1.5"])
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA12.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA12.txt"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA17.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA17.txt"
Install file: "share/WFIRST-AFTA_Pupil_Mask_C5_20141010_PLT.fits.gz" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/WFIRST-AFTA_Pupil_Mask_C5_20141010_PLT.fits.gz"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA15.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA15.txt"
Install file: "share/acs_I_unrot_sci_20_cf.fits" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/acs_I_unrot_sci_20_cf.fits"
Install file: "share/sip_422.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/sip_422.txt"
Install file: "share/afta_throughput.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/afta_throughput.txt"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA10.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA10.txt"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA03.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA03.txt"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA09.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA09.txt"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA01.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA01.txt"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA11.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA11.txt"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA06.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA06.txt"
Install directory: "share/sensors" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/sensors"
Install file: "share/sensors/abs_length.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/sensors/abs_length.dat"
Install file: "share/sensors/lsst_e2v_32.cfg" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/sensors/lsst_e2v_32.cfg"
Install file: "share/sensors/lsst_e2v_32.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/sensors/lsst_e2v_32.dat"
Install file: "share/sensors/lsst_itl_32.cfg" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/sensors/lsst_itl_32.cfg"
Install file: "share/sensors/lsst_itl_32.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/sensors/lsst_itl_32.dat"
Install file: "share/sensors/lsst_itl_8.cfg" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/sensors/lsst_itl_8.cfg"
Install file: "share/sensors/lsst_itl_8.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/sensors/lsst_itl_8.dat"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA07.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA07.txt"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA08.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA08.txt"
Install directory: "share/SEDs" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/SEDs"
Install file: "share/SEDs/CWW_E_ext.sed" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/SEDs/CWW_E_ext.sed"
Install file: "share/SEDs/CWW_E_ext_more.sed" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/SEDs/CWW_E_ext_more.sed"
Install file: "share/SEDs/CWW_Im_ext.sed" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/SEDs/CWW_Im_ext.sed"
Install file: "share/SEDs/CWW_Im_ext_more.sed" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/SEDs/CWW_Im_ext_more.sed"
Install file: "share/SEDs/CWW_Sbc_ext.sed" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/SEDs/CWW_Sbc_ext.sed"
Install file: "share/SEDs/CWW_Sbc_ext_more.sed" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/SEDs/CWW_Sbc_ext_more.sed"
Install file: "share/SEDs/CWW_Scd_ext.sed" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/SEDs/CWW_Scd_ext.sed"
Install file: "share/SEDs/CWW_Scd_ext_more.sed" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/SEDs/CWW_Scd_ext_more.sed"
Install file: "share/SEDs/README.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/SEDs/README.txt"
Install file: "share/SEDs/vega.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/SEDs/vega.txt"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA13.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA13.txt"
Install directory: "share/bandpasses" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/bandpasses"
Install file: "share/bandpasses/ACS_wfc_F435W.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/bandpasses/ACS_wfc_F435W.dat"
Install file: "share/bandpasses/ACS_wfc_F606W.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/bandpasses/ACS_wfc_F606W.dat"
Install file: "share/bandpasses/ACS_wfc_F775W.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/bandpasses/ACS_wfc_F775W.dat"
Install file: "share/bandpasses/ACS_wfc_F814W.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/bandpasses/ACS_wfc_F814W.dat"
Install file: "share/bandpasses/ACS_wfc_F850LP.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/bandpasses/ACS_wfc_F850LP.dat"
Install file: "share/bandpasses/LSST_g.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/bandpasses/LSST_g.dat"
Install file: "share/bandpasses/LSST_i.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/bandpasses/LSST_i.dat"
Install file: "share/bandpasses/LSST_r.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/bandpasses/LSST_r.dat"
Install file: "share/bandpasses/LSST_u.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/bandpasses/LSST_u.dat"
Install file: "share/bandpasses/LSST_y.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/bandpasses/LSST_y.dat"
Install file: "share/bandpasses/LSST_z.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/bandpasses/LSST_z.dat"
Install file: "share/bandpasses/README.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/bandpasses/README.txt"
Install file: "share/bandpasses/WFC3_ir_F105W.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/bandpasses/WFC3_ir_F105W.dat"
Install file: "share/bandpasses/WFC3_ir_F125W.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/bandpasses/WFC3_ir_F125W.dat"
Install file: "share/bandpasses/WFC3_ir_F160W.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/bandpasses/WFC3_ir_F160W.dat"
Install file: "share/bandpasses/WFC3_uvis_F275W.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/bandpasses/WFC3_uvis_F275W.dat"
Install file: "share/bandpasses/WFC3_uvis_F336W.dat" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/bandpasses/WFC3_uvis_F336W.dat"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA16.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA16.txt"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA04.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA04.txt"
Install file: "share/wfc_F814W.dat.gz" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/wfc_F814W.dat.gz"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA14.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA14.txt"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA18.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA18.txt"
Install file: "share/AFTA_C5_WFC_Zernike_Data_150717_SCA02.txt" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA02.txt"
Install file: "galsim/fft.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/fft.py"
Install file: "galsim/gsobject.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/gsobject.py"
Install file: "galsim/gsparams.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/gsparams.py"
Install file: "galsim/lensing_ps.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/lensing_ps.py"
Install file: "galsim/interpolatedimage.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/interpolatedimage.py"
Install file: "galsim/celestial.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/celestial.py"
Install file: "galsim/scene.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/scene.py"
Install file: "galsim/fitswcs.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/fitswcs.py"
Install file: "galsim/integ.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/integ.py"
Install file: "galsim/_pyfits.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/_pyfits.py"
Install file: "galsim/photon_array.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/photon_array.py"
Install file: "galsim/phase_screens.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/phase_screens.py"
Install file: "galsim/hsm.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/hsm.py"
Install file: "galsim/sed.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/sed.py"
Install file: "galsim/image.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/image.py"
Install file: "galsim/shapelet.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/shapelet.py"
Install file: "galsim/pse.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/pse.py"
Install file: "galsim/sensor.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/sensor.py"
Install file: "galsim/chromatic.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/chromatic.py"
Install file: "galsim/nfw_halo.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/nfw_halo.py"
Install file: "galsim/phase_psf.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/phase_psf.py"
Install file: "galsim/noise.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/noise.py"
Install file: "galsim/catalog.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/catalog.py"
Install file: "galsim/_version.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/_version.py"
Install file: "galsim/table.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/table.py"
Install file: "galsim/position.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/position.py"
Install file: "galsim/random.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/random.py"
Install file: "galsim/bessel.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/bessel.py"
Install file: "galsim/utilities.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/utilities.py"
Install file: "galsim/base.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/base.py"
Install file: "galsim/compound.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/compound.py"
Install file: "galsim/__init__.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/__init__.py"
Install file: "galsim/fits.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/fits.py"
Install file: "galsim/optics.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/optics.py"
Install file: "galsim/transform.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/transform.py"
Install file: "galsim/shear.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/shear.py"
Install file: "galsim/dcr.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/dcr.py"
Install file: "galsim/bandpass.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/bandpass.py"
Install file: "galsim/bounds.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/bounds.py"
Install file: "galsim/real.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/real.py"
Install file: "galsim/inclinedexponential.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/inclinedexponential.py"
Install file: "galsim/angle.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/angle.py"
Install file: "galsim/detectors.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/detectors.py"
Install file: "galsim/meta_data.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/meta_data.py"
Install file: "galsim/cdmodel.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/cdmodel.py"
Install file: "galsim/inclinedsersic.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/inclinedsersic.py"
Install file: "galsim/correlatednoise.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/correlatednoise.py"
Install file: "galsim/fds_test.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/fds_test.py"
Install file: "galsim/wcs.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/wcs.py"
Install file: "galsim/config/value.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/config/value.py"
Install file: "galsim/config/output_multifits.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/config/output_multifits.py"
Install file: "galsim/config/gsobject.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/config/gsobject.py"
Install file: "galsim/config/stamp_ring.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/config/stamp_ring.py"
Install file: "galsim/config/extra_psf.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/config/extra_psf.py"
Install file: "galsim/config/input_real.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/config/input_real.py"
Install file: "galsim/config/value_random.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/config/value_random.py"
Install file: "galsim/config/extra.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/config/extra.py"
Install file: "galsim/config/stamp.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/config/stamp.py"
Install file: "galsim/config/value_eval.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/config/value_eval.py"
Install file: "galsim/config/output_datacube.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/config/output_datacube.py"
Install file: "galsim/config/image.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/config/image.py"
Install file: "galsim/config/image_tiled.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/config/image_tiled.py"
Install file: "galsim/config/image_scattered.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/config/image_scattered.py"
Install file: "galsim/config/process.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/config/process.py"
Install file: "galsim/config/extra_weight.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/config/extra_weight.py"
Install file: "galsim/config/extra_badpix.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/config/extra_badpix.py"
Install file: "galsim/config/input.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/config/input.py"
Install file: "galsim/config/noise.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/config/noise.py"
Install file: "galsim/config/input_cosmos.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/config/input_cosmos.py"
Install file: "galsim/config/input_powerspectrum.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/config/input_powerspectrum.py"
Install file: "galsim/config/output.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/config/output.py"
Install file: "galsim/config/input_fitsheader.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/config/input_fitsheader.py"
Install file: "galsim/config/__init__.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/config/__init__.py"
Install file: "galsim/config/input_nfw.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/config/input_nfw.py"
Install file: "galsim/config/extra_truth.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/config/extra_truth.py"
Install file: "galsim/config/wcs.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/config/wcs.py"
Install file: "galsim/des/des_psfex.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/des/des_psfex.py"
Install file: "galsim/des/des_shapelet.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/des/des_shapelet.py"
Install file: "galsim/des/__init__.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/des/__init__.py"
Install file: "galsim/des/des_meds.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/des/des_meds.py"
Install file: "galsim/deprecated/interpolatedimage.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/deprecated/interpolatedimage.py"
Install file: "galsim/deprecated/photon_array.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/deprecated/photon_array.py"
Install file: "galsim/deprecated/sed.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/deprecated/sed.py"
Install file: "galsim/deprecated/image.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/deprecated/image.py"
Install file: "galsim/deprecated/shapelet.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/deprecated/shapelet.py"
Install file: "galsim/deprecated/gsobject_ring.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/deprecated/gsobject_ring.py"
Install file: "galsim/deprecated/chromatic.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/deprecated/chromatic.py"
Install file: "galsim/deprecated/noise.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/deprecated/noise.py"
Install file: "galsim/deprecated/random.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/deprecated/random.py"
Install file: "galsim/deprecated/base.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/deprecated/base.py"
Install file: "galsim/deprecated/__init__.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/deprecated/__init__.py"
Install file: "galsim/deprecated/optics.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/deprecated/optics.py"
Install file: "galsim/deprecated/shear.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/deprecated/shear.py"
Install file: "galsim/deprecated/bandpass.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/deprecated/bandpass.py"
Install file: "galsim/deprecated/bounds.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/deprecated/bounds.py"
Install file: "galsim/deprecated/angle.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/deprecated/angle.py"
Install file: "galsim/deprecated/correlatednoise.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/deprecated/correlatednoise.py"
Install file: "galsim/wfirst/wfirst_psfs.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/wfirst/wfirst_psfs.py"
Install file: "galsim/wfirst/wfirst_bandpass.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/wfirst/wfirst_bandpass.py"
Install file: "galsim/wfirst/wfirst_backgrounds.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/wfirst/wfirst_backgrounds.py"
Install file: "galsim/wfirst/__init__.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/wfirst/__init__.py"
Install file: "galsim/wfirst/wfirst_detectors.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/wfirst/wfirst_detectors.py"
Install file: "galsim/wfirst/wfirst_wcs.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/wfirst/wfirst_wcs.py"
Install file: "galsim/lsst/lsst_wcs.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/lsst/lsst_wcs.py"
Install file: "galsim/lsst/__init__.py" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/lsst/__init__.py"
BuildExecutableScript(["bin/installed_python"], ["bin/installed_python.py"])
Install file: "galsim/_galsim.so" as "/data/packages/python-galsim-git/python-galsim-git/pkg/python2-galsim-git/usr/lib/python2.7/site-packages/galsim/_galsim.so"
CheckPyPrefix(["check"], [])
FinalMessages(["final"], [])
scons: done building targets.
==> Tidying install...
-> Removing libtool files...
-> Purging unwanted files...
-> Removing static library files...
-> Stripping unneeded symbols from binaries and libraries...
-> Compressing man and info pages...
==> Checking for packaging issue...
==> Creating package "python2-galsim-git"...
-> Generating .PKGINFO file...
-> Generating .BUILDINFO file...
-> Generating .MTREE file...
-> Compressing package...
==> Leaving fakeroot environment.
==> Finished making: python-galsim-git v1.5.1.r0.9de448ef9-1 (Thu Jan 4 23:50:03 -05 2018)
[andres@PAN python-galsim-git]$ Command 2
sudo pacman -U python-galsim-git-v1.5.1.r0.9de448ef9-1-x86_64.pkg.tar.xz Output 2
loading packages...
resolving dependencies...
looking for conflicting packages...
Packages (1) python-galsim-git-v1.5.1.r0.9de448ef9-1
Total Installed Size: 13.78 MiB
:: Proceed with installation? [Y/n]
(1/1) checking keys in keyring [####################################################] 100%
(1/1) checking package integrity [####################################################] 100%
(1/1) loading package files [####################################################] 100%
(1/1) checking for file conflicts [####################################################] 100%
(1/1) checking available disk space [####################################################] 100%
:: Processing package changes...
(1/1) installing python-galsim-git [####################################################] 100%
:: Running post-transaction hooks...
(1/1) Arming ConditionNeedsUpdate...
[andres@PAN python-galsim-git]$ Command 3
sudo pacman -U python2-galsim-git-v1.5.1.r0.9de448ef9-1-x86_64.pkg.tar.xz Output 3
loading packages...
resolving dependencies...
looking for conflicting packages...
Packages (1) python2-galsim-git-v1.5.1.r0.9de448ef9-1
Total Installed Size: 13.79 MiB
:: Proceed with installation? [Y/n]
(1/1) checking keys in keyring [####################################################] 100%
(1/1) checking package integrity [####################################################] 100%
(1/1) loading package files [####################################################] 100%
(1/1) checking for file conflicts [####################################################] 100%
error: failed to commit transaction (conflicting files)
python2-galsim-git: /usr/bin/galsim exists in filesystem
python2-galsim-git: /usr/bin/galsim_download_cosmos exists in filesystem
python2-galsim-git: /usr/bin/galsim_json exists in filesystem
python2-galsim-git: /usr/bin/galsim_yaml exists in filesystem
python2-galsim-git: /usr/lib/libgalsim.so exists in filesystem
python2-galsim-git: /usr/lib/libgalsim.so.1.5 exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA01.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA02.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA03.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA04.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA05.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA06.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA07.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA08.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA09.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA10.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA11.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA12.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA13.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA14.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA15.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA16.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA17.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA18.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/SEDs/CWW_E_ext.sed exists in filesystem
python2-galsim-git: /usr/share/galsim/SEDs/CWW_E_ext_more.sed exists in filesystem
python2-galsim-git: /usr/share/galsim/SEDs/CWW_Im_ext.sed exists in filesystem
python2-galsim-git: /usr/share/galsim/SEDs/CWW_Im_ext_more.sed exists in filesystem
python2-galsim-git: /usr/share/galsim/SEDs/CWW_Sbc_ext.sed exists in filesystem
python2-galsim-git: /usr/share/galsim/SEDs/CWW_Sbc_ext_more.sed exists in filesystem
python2-galsim-git: /usr/share/galsim/SEDs/CWW_Scd_ext.sed exists in filesystem
python2-galsim-git: /usr/share/galsim/SEDs/CWW_Scd_ext_more.sed exists in filesystem
python2-galsim-git: /usr/share/galsim/SEDs/README.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/SEDs/vega.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/WFIRST-AFTA_Pupil_Mask_C5_20141010_PLT.fits.gz exists in filesystem
python2-galsim-git: /usr/share/galsim/acs_I_unrot_sci_20_cf.fits exists in filesystem
python2-galsim-git: /usr/share/galsim/afta_throughput.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/ACS_wfc_F435W.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/ACS_wfc_F606W.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/ACS_wfc_F775W.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/ACS_wfc_F814W.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/ACS_wfc_F850LP.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/LSST_g.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/LSST_i.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/LSST_r.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/LSST_u.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/LSST_y.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/LSST_z.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/README.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/WFC3_ir_F105W.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/WFC3_ir_F125W.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/WFC3_ir_F160W.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/WFC3_uvis_F275W.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/WFC3_uvis_F336W.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/sensors/abs_length.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/sensors/lsst_e2v_32.cfg exists in filesystem
python2-galsim-git: /usr/share/galsim/sensors/lsst_e2v_32.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/sensors/lsst_itl_32.cfg exists in filesystem
python2-galsim-git: /usr/share/galsim/sensors/lsst_itl_32.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/sensors/lsst_itl_8.cfg exists in filesystem
python2-galsim-git: /usr/share/galsim/sensors/lsst_itl_8.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/sip_422.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/wfc_F814W.dat.gz exists in filesystem
python2-galsim-git: /usr/share/galsim/wfirst_sky_backgrounds.txt exists in filesystem
Errors occurred, no packages were upgraded.Most of those files in conflict are in /usr/share and actually must be the same for both package. However there some files in /usr/bin and /usr/lib I am not sure if those should by the same for both packages. On the other hand, I do not now if the solution to the conflicts, is to do something like
install -Dm644 LICENSE $pkgdir/usr/share/licenses/$pkgname/LICENSEfor each file in the package() functions.
Thanks in advance, for your help.
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#2 2018-01-05 06:38:50
- eschwartz
- Fellow
- Registered: 2014-08-08
- Posts: 4,097
Re: Many files in conflict in two packages. PKGBUILD split.
You should use a third split package e.g. galsim-common containing the shared data files used by both packages. Regarding /usr/lib/libgalsim.so.1.5, I assume it is the same file for either package, and not something linked to libpython3.so or libpython2.so? In which case that too should go in a common package.
As for the commands in /usr/bin, it is common for packages like python/idle/pip/pylint/pytest to rename the versions in the python2 split package to become e.g. galsim2
But it really depends on what the commands do. As a forward-looking distro, Arch Linux prefers using Python 3 when possible, so you should probably prefer the python3 commands and get rid of the python2 commands altogether...
Unless, like the above examples, the command provides unique functionality specific to the version of the python interpreter that is being used. But that is really only the case for tools that integrate into the python environment itself (like pip and idle and python itself, obviously), or things like pylint/pytest which analyze python code and need to run with a specific interpreter.
Managing AUR repos The Right Way -- aurpublish (now a standalone tool)
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#3 2018-01-06 21:38:50
- andalenavals
- Member
- Registered: 2017-10-30
- Posts: 39
Re: Many files in conflict in two packages. PKGBUILD split.
Eschwartz wrote:
You should use a third split package e.g. galsim-common containing the shared data files used by both packages. Regarding /usr/lib/libgalsim.so.1.5, I assume it is the same file for either package, and not something linked to libpython3.so or libpython2.so? In which case that too should go in a common package.
I just tried what you said. But I suspect I am doing something wrong.
Could you guide me if this
# Maintainer: Andres Alejandro Navarro Alsina <aanavarroa@unal.edu.co>
# Contributor: GalSim developers team on GitHub
pkgbase=python-galsim-git
pkgname=('python-galsim-git' 'python2-galsim-git' 'galsim-common' )
pkgver=v1.5.1.r0.9de448ef9
pkgrel=1
pkgdesc=" The modular galaxy image simulation toolkit "
arch=('i686' 'x86_64')
url="https://github.com/GalSim-developers/GalSim.git"
license=('BSD')
makedepends=('git' 'scons' 'boost' 'fftw' 'tmv-git' 'python')
source=("${pkgbase}::git+${url}")
md5sums=('SKIP')
pkgver() {
cd "${pkgbase}"
printf "%s" "$(git describe --long | sed 's/\([^-]*-\)g/r\1/;s/-/./g')"
}
prepare() {
cp -a $pkgbase{,-py2}
}
build() {
cd "$srcdir"/$pkgbase
scons PREFIX=/usr TMV_DIR=/usr PYTHON=python
cd "$srcdir"/$pkgbase-py2
scons PREFIX=/usr TMV_DIR=/usr PYTHON=python2
}
check() {
cd "$srcdir"/$pkgbase/tests
nosetests -v
cd "$srcdir"/$pkgbase-py2/tests
nosetests2 -v
}
package_python-galsim-git() {
depends=('python' 'boost-libs' 'fftw' 'tmv-git' 'galsim-common')
cd $pkgbase
scons PREFIX=$pkgdir/usr FINAL_PREFIX=/usr PYTHON=python install
install -Dm644 LICENSE $pkgdir/usr/share/licenses/$pkgname/LICENSE
}
package_python2-galsim-git() {
depends=('python2' 'boost-libs' 'fftw' 'tmv-git' 'galsim-common')
cd $pkgbase-py2
scons PREFIX=$pkgdir/usr FINAL_PREFIX=/usr PYTHON=python2 install
install -Dm644 LICENSE $pkgdir/usr/share/licenses/$pkgname/LICENSE
}
package_galsim-common() {
pkgdesc='common files for python-galsim-git and python2-galsim-git'
cd $pkgbase
install -Dm644 LICENSE $pkgdir/usr/share/licenses/$pkgname/LICENSE
install -d $pkgdir/usr/share/$pkgbase
install -Dm644 "$srcdir"/$pkgbase/share/*.txt $pkgdir/usr/share/$pkgbase
}is what you expected ?
Here goes the output after trying to install. Basically, is the same output than before.
error: failed to commit transaction (conflicting files)
python2-galsim-git: /usr/bin/galsim exists in filesystem
python2-galsim-git: /usr/bin/galsim_download_cosmos exists in filesystem
python2-galsim-git: /usr/bin/galsim_json exists in filesystem
python2-galsim-git: /usr/bin/galsim_yaml exists in filesystem
python2-galsim-git: /usr/lib/libgalsim.so exists in filesystem
python2-galsim-git: /usr/lib/libgalsim.so.1.5 exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA01.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA02.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA03.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA04.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA05.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA06.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA07.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA08.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA09.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA10.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA11.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA12.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA13.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA14.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA15.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA16.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA17.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/AFTA_C5_WFC_Zernike_Data_150717_SCA18.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/SEDs/CWW_E_ext.sed exists in filesystem
python2-galsim-git: /usr/share/galsim/SEDs/CWW_E_ext_more.sed exists in filesystem
python2-galsim-git: /usr/share/galsim/SEDs/CWW_Im_ext.sed exists in filesystem
python2-galsim-git: /usr/share/galsim/SEDs/CWW_Im_ext_more.sed exists in filesystem
python2-galsim-git: /usr/share/galsim/SEDs/CWW_Sbc_ext.sed exists in filesystem
python2-galsim-git: /usr/share/galsim/SEDs/CWW_Sbc_ext_more.sed exists in filesystem
python2-galsim-git: /usr/share/galsim/SEDs/CWW_Scd_ext.sed exists in filesystem
python2-galsim-git: /usr/share/galsim/SEDs/CWW_Scd_ext_more.sed exists in filesystem
python2-galsim-git: /usr/share/galsim/SEDs/README.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/SEDs/vega.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/WFIRST-AFTA_Pupil_Mask_C5_20141010_PLT.fits.gz exists in filesystem
python2-galsim-git: /usr/share/galsim/acs_I_unrot_sci_20_cf.fits exists in filesystem
python2-galsim-git: /usr/share/galsim/afta_throughput.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/ACS_wfc_F435W.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/ACS_wfc_F606W.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/ACS_wfc_F775W.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/ACS_wfc_F814W.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/ACS_wfc_F850LP.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/LSST_g.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/LSST_i.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/LSST_r.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/LSST_u.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/LSST_y.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/LSST_z.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/README.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/WFC3_ir_F105W.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/WFC3_ir_F125W.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/WFC3_ir_F160W.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/WFC3_uvis_F275W.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/bandpasses/WFC3_uvis_F336W.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/sensors/abs_length.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/sensors/lsst_e2v_32.cfg exists in filesystem
python2-galsim-git: /usr/share/galsim/sensors/lsst_e2v_32.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/sensors/lsst_itl_32.cfg exists in filesystem
python2-galsim-git: /usr/share/galsim/sensors/lsst_itl_32.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/sensors/lsst_itl_8.cfg exists in filesystem
python2-galsim-git: /usr/share/galsim/sensors/lsst_itl_8.dat exists in filesystem
python2-galsim-git: /usr/share/galsim/sip_422.txt exists in filesystem
python2-galsim-git: /usr/share/galsim/wfc_F814W.dat.gz exists in filesystem
python2-galsim-git: /usr/share/galsim/wfirst_sky_backgrounds.txt exists in filesystem
Errors occurred, no packages were upgraded.
[andres@PAN python-galsim-git]$ Offline
#4 2018-01-07 00:26:53
- eschwartz
- Fellow
- Registered: 2014-08-08
- Posts: 4,097
Re: Many files in conflict in two packages. PKGBUILD split.
You'll need to *remove* the /usr/share files from both python{,2}-galsim-git packages, then add them to the galsim-common-git package.
Eschwartz wrote:
As for the commands in /usr/bin, it is common for packages like python/idle/pip/pylint/pytest to rename the versions in the python2 split package to become e.g. galsim2
But it really depends on what the commands do. As a forward-looking distro, Arch Linux prefers using Python 3 when possible, so you should probably prefer the python3 commands and get rid of the python2 commands altogether...
python2-galsim-git should probably just rm -rf "$pkgdir"/usr/bin. If it is really important that users have a python2 version, you will have to `for i in galsim galsim_download_cosmos ...; do mv "$pkgdir"/usr/bin/$i{,2}; done`. You'd also have to patch some of the scripts to internally use the right name!
Also, you forgot to quote "$pkgdir" a couple times in your package functions.
Managing AUR repos The Right Way -- aurpublish (now a standalone tool)
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#5 2018-01-08 07:08:54
- andalenavals
- Member
- Registered: 2017-10-30
- Posts: 39
Re: Many files in conflict in two packages. PKGBUILD split.
OK, now I think it is done!
# Maintainer: Andres Alejandro Navarro Alsina <aanavarroa@unal.edu.co>
# Contributor: GalSim developers team on GitHub
pkgbase=python-galsim-git
pkgname=('python-galsim-git' 'python2-galsim-git' 'galsim-common-git' )
pkgver=v1.5.1.r0.9de448ef9
pkgrel=1
pkgdesc=" The modular galaxy image simulation toolkit "
arch=('i686' 'x86_64')
url="https://github.com/GalSim-developers/GalSim.git"
license=('BSD')
makedepends=('git' 'scons' 'boost' 'fftw' 'tmv-git' 'python')
source=("${pkgbase}::git+${url}")
md5sums=('SKIP')
pkgver() {
cd "${pkgbase}"
printf "%s" "$(git describe --long | sed 's/\([^-]*-\)g/r\1/;s/-/./g')"
}
prepare() {
cp -a $pkgbase{,-py2}
}
build() {
cd "$srcdir"/$pkgbase
scons PREFIX=/usr TMV_DIR=/usr PYTHON=python
cd "$srcdir"/$pkgbase-py2
scons PREFIX=/usr TMV_DIR=/usr PYTHON=python2
}
check() {
cd "$srcdir"/$pkgbase/tests
nosetests -v
cd "$srcdir"/$pkgbase-py2/tests
nosetests2 -v
}
package_python-galsim-git() {
depends=('python' 'boost-libs' 'fftw' 'tmv-git' 'galsim-common-git')
cd $pkgbase
scons PREFIX="${pkgdir}"/usr FINAL_PREFIX=/usr PYTHON=python install
rm -rf "${pkgdir}"/usr/share
rm -f "${pkgdir}"/usr/lib/libgalsim.so
rm -f "${pkgdir}"/usr/lib/libgalsim.so.1.5
install -Dm644 LICENSE "${pkgdir}"/usr/share/licenses/$pkgname/LICENSE
}
package_python2-galsim-git() {
depends=('python2' 'boost-libs' 'fftw' 'tmv-git' 'galsim-common-git')
cd $pkgbase-py2
scons PREFIX=$pkgdir/usr FINAL_PREFIX=/usr PYTHON=python2 install
rm -rf "${pkgdir}"/usr/share
rm -f "${pkgdir}"/usr/lib/libgalsim.so
rm -f "${pkgdir}"/usr/lib/libgalsim.so.1.5
for i in galsim galsim_download_cosmos galsim_json galsim_yaml ; do mv "$pkgdir"/usr/bin/${i}{,2}; done
install -Dm644 LICENSE "${pkgdir}"/usr/share/licenses/$pkgname/LICENSE
}
package_galsim-common-git() {
depends=('fftw' 'tmv-git')
pkgdesc='common files for python-galsim-git and python2-galsim-git'
cd $pkgbase
install -Dm644 LICENSE "${pkgdir}"/usr/share/licenses/$pkgname/LICENSE
mv "${srcdir}"/$pkgbase/share/ "${pkgdir}"/usr/share/$pkgbase
install -Dm644 "${srcdir}"/$pkgbase/lib/libgalsim.so "${pkgdir}"/usr/lib/libgalsim.so
install -Dm644 "${srcdir}"/$pkgbase/lib/libgalsim.so.1.5 "${pkgdir}"/usr/lib/libgalsim.so.1.5
}Still do not know why now namcap complains about not needed dependencies 'fftw' and 'galsim-common-git'.
Eschwartz wrote:
You'd also have to patch some of the scripts to internally use the right name!
I rename the binaries but I have never done a patch before. How could I now if a need to do this? and what a need to know to do it properly.
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