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#1 2018-01-31 01:57:48
- andalenavals
- Member
- Registered: 2017-10-30
- Posts: 39
Same binary in split PKGBUILD
Hi guys,
I am trying to contribute in AUR with the follogin package.
pkgbase=python-piff-git
pkgname=('python-piff-git' 'python2-piff-git')
pkgver=v0.1.0.r527.250432f
pkgrel=1
pkgdesc=" Piff is a Python software package for modeling the
point-spread function (PSF) across multiple detectors in the full
field of view"
arch=('any')
url="https://github.com/rmjarvis/Piff"
license=('BSD')
makedepends=('git' 'python' 'libffi' 'python-cffi' 'python-numpy' 'python-scipy' 'python-pyaml' 'python-treecorr-git' 'python-fitsio-git' 'python-scikit-learn' 'python-lmfit' 'python-matplotlib' 'python2' 'python2-cffi' 'python2-numpy' 'python2-scipy' 'python2-pyaml' 'python2-treecorr-git' 'python2-fitsio-git' 'python2-scikit-learn' 'python2-lmfit' 'python2-matplotlib' )
source=("${pkgbase}::git+${url}")
md5sums=('SKIP')
pkgver() {
cd "${pkgbase}"
printf "%s" "$(git describe --long | sed 's/\([^-]*-\)g/r\1/;s/-/./g')"
}
prepare() {
cp -a $pkgbase{,-py2}
}
build() {
cd "$srcdir"/$pkgbase
python setup.py build
cd "$srcdir"/$pkgbase-py2
python2 setup.py build
}
check() {
cd "$srcdir"/$pkgbase/tests
nosetests -v || warning 'Tests failed'
cd "$srcdir"/$pkgbase-py2/tests
nosetests2 -v || warning 'Tests failed'
}
package_python-piff-git() {
depends=('python')
cd $pkgbase
python setup.py install --root=${pkgdir} --prefix=/usr --optimize=1
install -Dm644 LICENSE "${pkgdir}"/usr/share/licenses/$pkgname/LICENSE
}
package_python2-piff-git() {
depends=('python2')
cd $pkgbase-py2
python2 setup.py install --root=${pkgdir} --prefix=/usr --optimize=1
#mv "$pkgdir"/usr/bin/piffify{,2}
#mv "$pkgdir"/usr/bin/plotify{,2}
rm -rf "$pkgdir"/usr/bin
install -Dm644 LICENSE "${pkgdir}"/usr/share/licenses/$pkgname/LICENSE
}However I have doubts and I would like to here your opinions.
1. The check function I added is basically doing anything, because for some reason I need to install first the package before running the test. I got
[andres@PAN python-piff-git]$ makepkg -s
==> Making package: python-piff-git v0.1.0.r527.250432f-1 (Tue Jan 30 23:03:17 -02 2018)
==> Checking runtime dependencies...
==> Checking buildtime dependencies...
==> Retrieving sources...
-> Cloning python-piff-git git repo...
Cloning into bare repository '/data/packages/python-piff-git/python-piff-git/python-piff-git'...
remote: Counting objects: 4595, done.
remote: Compressing objects: 100% (85/85), done.
remote: Total 4595 (delta 92), reused 116 (delta 77), pack-reused 4433
Receiving objects: 100% (4595/4595), 34.50 MiB | 2.93 MiB/s, done.
Resolving deltas: 100% (3379/3379), done.
==> Validating source files with md5sums...
python-piff-git ... Skipped
==> Extracting sources...
-> Creating working copy of Piff git repo...
Cloning into 'python-piff-git'...
done.
==> Starting prepare()...
==> Starting pkgver()...
==> Starting build()...
Using setuptools version 38.4.0
Python version = 3.6.4 (default, Jan 5 2018, 02:35:40)
[GCC 7.2.1 20171224]
packages = ['piff', 'piff.des']
Checking that GalSim can be imported
GalSim is version 1.5.1
Piff version is 0.1
running build
running build_py
creating build
creating build/lib
creating build/lib/piff
copying piff/star.py -> build/lib/piff
copying piff/optical_model.py -> build/lib/piff
copying piff/pixelgrid.py -> build/lib/piff
copying piff/twod_stats.py -> build/lib/piff
copying piff/singlechip.py -> build/lib/piff
copying piff/gp_interp_2pcf.py -> build/lib/piff
copying piff/simplepsf.py -> build/lib/piff
copying piff/interp.py -> build/lib/piff
copying piff/input.py -> build/lib/piff
copying piff/_version.py -> build/lib/piff
copying piff/kernel.py -> build/lib/piff
copying piff/gsobject_model.py -> build/lib/piff
copying piff/polynomial_interp.py -> build/lib/piff
copying piff/mean_interp.py -> build/lib/piff
copying piff/output.py -> build/lib/piff
copying piff/stats.py -> build/lib/piff
copying piff/basis_interp.py -> build/lib/piff
copying piff/__init__.py -> build/lib/piff
copying piff/config.py -> build/lib/piff
copying piff/psf.py -> build/lib/piff
copying piff/util.py -> build/lib/piff
copying piff/model.py -> build/lib/piff
copying piff/outliers.py -> build/lib/piff
copying piff/star_stats.py -> build/lib/piff
copying piff/gp_interp.py -> build/lib/piff
copying piff/knn_interp.py -> build/lib/piff
creating build/lib/piff/des
copying piff/des/decaminfo.py -> build/lib/piff/des
copying piff/des/__init__.py -> build/lib/piff/des
copying piff/des/decam_wavefront.py -> build/lib/piff/des
running build_scripts
creating build/scripts-3.6
copying and adjusting scripts/piffify -> build/scripts-3.6
copying and adjusting scripts/plotify -> build/scripts-3.6
changing mode of build/scripts-3.6/piffify from 644 to 755
changing mode of build/scripts-3.6/plotify from 644 to 755
Using setuptools version 38.4.0
Python version = 2.7.14 (default, Jan 5 2018, 10:41:29)
[GCC 7.2.1 20171224]
packages = ['piff', 'piff.des']
Checking that GalSim can be imported
GalSim is version 1.5.1
Piff version is 0.1
running build
running build_py
creating build
creating build/lib
creating build/lib/piff
copying piff/star.py -> build/lib/piff
copying piff/optical_model.py -> build/lib/piff
copying piff/pixelgrid.py -> build/lib/piff
copying piff/twod_stats.py -> build/lib/piff
copying piff/singlechip.py -> build/lib/piff
copying piff/gp_interp_2pcf.py -> build/lib/piff
copying piff/simplepsf.py -> build/lib/piff
copying piff/interp.py -> build/lib/piff
copying piff/input.py -> build/lib/piff
copying piff/_version.py -> build/lib/piff
copying piff/kernel.py -> build/lib/piff
copying piff/gsobject_model.py -> build/lib/piff
copying piff/polynomial_interp.py -> build/lib/piff
copying piff/mean_interp.py -> build/lib/piff
copying piff/output.py -> build/lib/piff
copying piff/stats.py -> build/lib/piff
copying piff/basis_interp.py -> build/lib/piff
copying piff/__init__.py -> build/lib/piff
copying piff/config.py -> build/lib/piff
copying piff/psf.py -> build/lib/piff
copying piff/util.py -> build/lib/piff
copying piff/model.py -> build/lib/piff
copying piff/outliers.py -> build/lib/piff
copying piff/star_stats.py -> build/lib/piff
copying piff/gp_interp.py -> build/lib/piff
copying piff/knn_interp.py -> build/lib/piff
creating build/lib/piff/des
copying piff/des/decaminfo.py -> build/lib/piff/des
copying piff/des/__init__.py -> build/lib/piff/des
copying piff/des/decam_wavefront.py -> build/lib/piff/des
running build_scripts
creating build/scripts-2.7
copying and adjusting scripts/piffify -> build/scripts-2.7
copying and adjusting scripts/plotify -> build/scripts-2.7
changing mode of build/scripts-2.7/piffify from 644 to 755
changing mode of build/scripts-2.7/plotify from 644 to 755
==> Starting check()...
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'obj.centroid() has been deprecated since GalSim version 1.5. Use obj.centroid instead. centroid is now a property rather than a function. Although note that the return type is not a PositionD (so you can get this message), but acts in most ways like a PositionD and is convertible into one using obj.centroid.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
test_gp_interp.test_anisotropic_guess ... /usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.trueCenter() has been deprecated since GalSim version 1.5. Use image.true_center instead.')
warnings.warn(s, GalSimDeprecationWarning)
ok
test_gp_interp.test_anisotropic_limit ... ok
test_gp_interp.test_anisotropic_rbf_kernel ... /usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.trueCenter() has been deprecated since GalSim version 1.5. Use image.true_center instead.')
warnings.warn(s, GalSimDeprecationWarning)
ok
test_gp_interp.test_constant_psf ... ERROR
test_gp_interp.test_gp_with_kernels ... ERROR
test_gp_interp.test_grf_psf ... /usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.trueCenter() has been deprecated since GalSim version 1.5. Use image.true_center instead.')
warnings.warn(s, GalSimDeprecationWarning)
ERROR
test_gp_interp.test_guess ... /usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.trueCenter() has been deprecated since GalSim version 1.5. Use image.true_center instead.')
warnings.warn(s, GalSimDeprecationWarning)
ok
test_gp_interp.test_guess_2pcf ... /usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.trueCenter() has been deprecated since GalSim version 1.5. Use image.true_center instead.')
warnings.warn(s, GalSimDeprecationWarning)
ERROR
test_gp_interp.test_polynomial_psf ... ERROR
test_gp_interp.test_vonkarman_kernel ... ERROR
test_gp_interp.test_vonkarman_psf ... ERROR
test_gp_interp.test_yaml ... /usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'HMS_Angle has been deprecated since GalSim version 1.5. Use Angle.from_hms instead.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'DMS_Angle has been deprecated since GalSim version 1.5. Use Angle.from_dms instead.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'obj.centroid() has been deprecated since GalSim version 1.5. Use obj.centroid instead. centroid is now a property rather than a function. Although note that the return type is not a PositionD (so you can get this message), but acts in most ways like a PositionD and is convertible into one using obj.centroid.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.trueCenter() has been deprecated since GalSim version 1.5. Use image.true_center instead.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.trueCenter() has been deprecated since GalSim version 1.5. Use image.true_center instead.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'obj.centroid() has been deprecated since GalSim version 1.5. Use obj.centroid instead. centroid is now a property rather than a function. Although note that the return type is not a PositionD (so you can get this message), but acts in most ways like a PositionD and is convertible into one using obj.centroid.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'HMS_Angle has been deprecated since GalSim version 1.5. Use Angle.from_hms instead.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'DMS_Angle has been deprecated since GalSim version 1.5. Use Angle.from_dms instead.')
warnings.warn(s, GalSimDeprecationWarning)
ERROR
test_gsobject_model.test_center ... ok
test_gsobject_model.test_direct ... ok
test_gsobject_model.test_gradient ... /usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.trueCenter() has been deprecated since GalSim version 1.5. Use image.true_center instead.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.trueCenter() has been deprecated since GalSim version 1.5. Use image.true_center instead.')
warnings.warn(s, GalSimDeprecationWarning)
ok
test_gsobject_model.test_gradient_center ... /usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'obj.centroid() has been deprecated since GalSim version 1.5. Use obj.centroid instead. centroid is now a property rather than a function. Although note that the return type is not a PositionD (so you can get this message), but acts in most ways like a PositionD and is convertible into one using obj.centroid.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.trueCenter() has been deprecated since GalSim version 1.5. Use image.true_center instead.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.trueCenter() has been deprecated since GalSim version 1.5. Use image.true_center instead.')
warnings.warn(s, GalSimDeprecationWarning)
ok
test_gsobject_model.test_interp ... /usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'obj.centroid() has been deprecated since GalSim version 1.5. Use obj.centroid instead. centroid is now a property rather than a function. Although note that the return type is not a PositionD (so you can get this message), but acts in most ways like a PositionD and is convertible into one using obj.centroid.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.trueCenter() has been deprecated since GalSim version 1.5. Use image.true_center instead.')
warnings.warn(s, GalSimDeprecationWarning)
ok
test_gsobject_model.test_missing ... /usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'obj.centroid() has been deprecated since GalSim version 1.5. Use obj.centroid instead. centroid is now a property rather than a function. Although note that the return type is not a PositionD (so you can get this message), but acts in most ways like a PositionD and is convertible into one using obj.centroid.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.trueCenter() has been deprecated since GalSim version 1.5. Use image.true_center instead.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.trueCenter() has been deprecated since GalSim version 1.5. Use image.true_center instead.')
warnings.warn(s, GalSimDeprecationWarning)
ok
test_gsobject_model.test_simple ... /usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'obj.centroid() has been deprecated since GalSim version 1.5. Use obj.centroid instead. centroid is now a property rather than a function. Although note that the return type is not a PositionD (so you can get this message), but acts in most ways like a PositionD and is convertible into one using obj.centroid.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
ok
test_input.test_basic ... ok
test_input.test_chipnum ... ok
test_input.test_cols ... ok
test_input.test_invalid ... ok
test_input.test_pointing ... /usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'HMS_Angle has been deprecated since GalSim version 1.5. Use Angle.from_hms instead.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'DMS_Angle has been deprecated since GalSim version 1.5. Use Angle.from_dms instead.')
warnings.warn(s, GalSimDeprecationWarning)
ok
test_input.test_stars ... ok
test_input.test_weight ... ok
test_knn_interp.test_config ... ERROR
test_knn_interp.test_decam_disk ... ok
test_knn_interp.test_decam_wavefront ... ok
test_knn_interp.test_decaminfo ... ok
test_knn_interp.test_disk ... ok
test_knn_interp.test_init ... ok
test_knn_interp.test_interp ... ok
test_optics.test_disk ... ok
test_optics.test_gaussian ... /usr/lib/python3.6/site-packages/lmfit/printfuncs.py:136: RuntimeWarning: invalid value encountered in double_scalars
spercent = '({:.2%})'.format(abs(par.stderr/par.value))
ok
test_optics.test_init ... ok
test_optics.test_kolmogorov ... ok
test_optics.test_optical ... ok
test_optics.test_pupil_im ... ok
test_optics.test_shearing ... ok
test_pixel.test_center ... ok
test_pixel.test_des_image ... ERROR
test_pixel.test_gradient ... /usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
ok
test_pixel.test_interp ... /usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
ok
test_pixel.test_missing ... /usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
ok
test_pixel.test_oversample ... ERROR
test_pixel.test_simplest ... ok
test_pixel.test_single_image ... ok
test_pixel.test_undersamp ... /usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
ok
test_pixel.test_undersamp_drift ... ok
test_pixel.test_undersamp_shift ... ok
test_poly.test_poly_guess ... ok
test_poly.test_poly_indexing ... ok
test_poly.test_poly_linear ... ok
test_poly.test_poly_load_err ... ok
test_poly.test_poly_load_save ... ok
test_poly.test_poly_mean ... ok
test_poly.test_poly_quadratic ... ok
test_poly.test_poly_raise ... ok
test_simple.test_Gaussian ... /usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'obj.centroid() has been deprecated since GalSim version 1.5. Use obj.centroid instead. centroid is now a property rather than a function. Although note that the return type is not a PositionD (so you can get this message), but acts in most ways like a PositionD and is convertible into one using obj.centroid.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.trueCenter() has been deprecated since GalSim version 1.5. Use image.true_center instead.')
warnings.warn(s, GalSimDeprecationWarning)
ok
test_simple.test_Mean ... ok
test_simple.test_single_image ... ERROR
test_star.test_celestial ... ok
test_star.test_euclidean ... ok
test_star.test_init ... ok
test_star.test_io ... ok
test_stats.test_rhostats_config ... ERROR
test_stats.test_shapestats_config ... ERROR
test_stats.test_shift_cmap ... FAIL
test_stats.test_starstats_config ... ERROR
test_stats.test_twodstats ... /usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.trueCenter() has been deprecated since GalSim version 1.5. Use image.true_center instead.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.trueCenter() has been deprecated since GalSim version 1.5. Use image.true_center instead.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
ok
test_stats.test_twodstats_config ... /usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'obj.centroid() has been deprecated since GalSim version 1.5. Use obj.centroid instead. centroid is now a property rather than a function. Although note that the return type is not a PositionD (so you can get this message), but acts in most ways like a PositionD and is convertible into one using obj.centroid.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
ERROR
test_wcs.test_focal ... ERROR
test_wcs.test_single ... ERROR
test_wcs.test_wrongwcs ... ERROR
======================================================================
ERROR: test_gp_interp.test_constant_psf
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3.6/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/piff_test_helper.py", line 80, in f2
result = f(*args, **kwargs)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/test_gp_interp.py", line 728, in test_constant_psf
npca=npca, optimize=optimize, rng=rng, check_config=True)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/test_gp_interp.py", line 664, in check_gp_2pcf
interp = piff.GPInterp2pcf(kernel=kernel, optimize=optimize, npca=npca, white_noise=1e-5)
AttributeError: module 'piff' has no attribute 'GPInterp2pcf'
-------------------- >> begin captured stdout << ---------------------
Initial state
-------------
chisq: 101729.98103271845 dof: 102300
chisq/dof: 0.9944279670842469
iteration: 0 chisq: 102042.86092775276 dof: 102300
iteration: 1 chisq: 102042.8606431069 dof: 102300
21.9**2 * RBF(length_scale=0.1)
s0: 0.1000 0.2000 0.4000 0.0300 0.0600
s1: 0.0998 0.2000 0.3999 0.0292 0.0623
s0 flux: 1.0000000003304728
s1 flux: 0.9997646776014859
Flux, ctr, chisq after interpolation:
0.9997646776014859 (0.0, 0.0) 1.5374979922275365e-05
max image abs diff = 0.00012111020314621579
max image abs value = 0.05719688440260678
min rtol = 0.0021174265768345965
Initial state
-------------
chisq: 101729.98103271845 dof: 102300
chisq/dof: 0.9944279670842469
iteration: 0 chisq: 102042.86092775276 dof: 102300
iteration: 1 chisq: 102042.8606431069 dof: 102300
21.9**2 * RBF(length_scale=0.1)
s0: 0.1000 0.2000 0.4000 0.0300 0.0600
s1: 0.0998 0.2000 0.3999 0.0292 0.0623
s0 flux: 1.0000000003304728
s1 flux: 0.9997646776014859
Flux, ctr, chisq after interpolation:
0.9997646776014859 (0.0, 0.0) 1.5374979922275365e-05
max image abs diff = 0.00012111020314621579
max image abs value = 0.05719688440260678
min rtol = 0.0021174265768345965
--------------------- >> end captured stdout << ----------------------
======================================================================
ERROR: test_gp_interp.test_gp_with_kernels
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3.6/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/piff_test_helper.py", line 80, in f2
result = f(*args, **kwargs)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/test_gp_interp.py", line 866, in test_gp_with_kernels
ntrain, nvalidate, nvisualize)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/test_gp_interp.py", line 297, in make_vonkarman_and_rbf_psf_params
kernel = 0.05**2 * piff.VonKarman(length_scale = scale_length)
AttributeError: module 'piff' has no attribute 'VonKarman'
======================================================================
ERROR: test_gp_interp.test_grf_psf
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3.6/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/piff_test_helper.py", line 80, in f2
result = f(*args, **kwargs)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/test_gp_interp.py", line 789, in test_grf_psf
check_config=check_config)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/test_gp_interp.py", line 664, in check_gp_2pcf
interp = piff.GPInterp2pcf(kernel=kernel, optimize=optimize, npca=npca, white_noise=1e-5)
AttributeError: module 'piff' has no attribute 'GPInterp2pcf'
-------------------- >> begin captured stdout << ---------------------
Initial state
-------------
chisq: 101281.55962287624 dof: 102300
chisq/dof: 0.9900445710936094
iteration: 0 chisq: 101474.68009784297 dof: 102300
iteration: 1 chisq: 101474.68070955998 dof: 102300
1**2 * RBF(length_scale=0.3) + WhiteKernel(noise_level=1e-05)
s0: 0.1952 -0.3361 0.6518 0.0114 -0.0017
s1: 0.1958 -0.3350 0.6502 0.0081 0.0009
s0 flux: 0.9999999953019499
s1 flux: 0.9974368143647422
Flux, ctr, chisq after interpolation:
0.9974368143647422 (0.0, 0.0) 2.4513092539218984e-05
max image abs diff = 8.905361261686215e-05
max image abs value = 0.022551355394142564
min rtol = 0.0039489250672708
Revalidating after i/o.
s0: 0.1952 -0.3361 0.6518 0.0114 -0.0017
s1: 0.1958 -0.3350 0.6502 0.0081 0.0009
s0 flux: 0.9999999953019499
s1 flux: 0.9974368143647422
Flux, ctr, chisq after interpolation:
0.9974368143647422 (0.0, 0.0) 2.4513092539218984e-05
max image abs diff = 8.905361261686215e-05
max image abs value = 0.022551355394142564
min rtol = 0.0039489250672708
--------------------- >> end captured stdout << ----------------------
======================================================================
ERROR: test_gp_interp.test_guess_2pcf
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3.6/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/piff_test_helper.py", line 80, in f2
result = f(*args, **kwargs)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/test_gp_interp.py", line 1105, in test_guess_2pcf
interp = piff.GPInterp2pcf(kernel=kernel, normalize=norm, white_noise=0.)
AttributeError: module 'piff' has no attribute 'GPInterp2pcf'
======================================================================
ERROR: test_gp_interp.test_polynomial_psf
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3.6/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/piff_test_helper.py", line 80, in f2
result = f(*args, **kwargs)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/test_gp_interp.py", line 756, in test_polynomial_psf
npca=npca, optimize=optimize, rng=rng)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/test_gp_interp.py", line 664, in check_gp_2pcf
interp = piff.GPInterp2pcf(kernel=kernel, optimize=optimize, npca=npca, white_noise=1e-5)
AttributeError: module 'piff' has no attribute 'GPInterp2pcf'
-------------------- >> begin captured stdout << ---------------------
Initial state
-------------
chisq: 101851.71203607491 dof: 102300
chisq/dof: 0.9956179084660304
iteration: 0 chisq: 101915.28478006269 dof: 102300
iteration: 1 chisq: 101915.28449836501 dof: 102300
1**2 * RBF(length_scale=0.3)
s0: 0.1789 0.1918 0.3688 -0.0042 -0.0163
s1: 0.1783 0.1908 0.3685 -0.0034 -0.0159
s0 flux: 0.9999999364180576
s1 flux: 0.9992619294000518
Flux, ctr, chisq after interpolation:
0.9992619294000518 (0.0, 0.0) 2.730125853862111e-05
max image abs diff = 0.00018523666690548057
max image abs value = 0.07084226436912518
min rtol = 0.002614776201114928
--------------------- >> end captured stdout << ----------------------
======================================================================
ERROR: test_gp_interp.test_vonkarman_kernel
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3.6/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/piff_test_helper.py", line 80, in f2
result = f(*args, **kwargs)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/test_gp_interp.py", line 947, in test_vonkarman_kernel
interp = piff.GPInterp2pcf(kernel=kernel,
AttributeError: module 'piff' has no attribute 'GPInterp2pcf'
======================================================================
ERROR: test_gp_interp.test_vonkarman_psf
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3.6/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/piff_test_helper.py", line 80, in f2
result = f(*args, **kwargs)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/test_gp_interp.py", line 833, in test_vonkarman_psf
ntrain, nvalidate, nvisualize)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/test_gp_interp.py", line 239, in make_vonkarman_psf_params
kernel = 0.1**2 * piff.VonKarman(length_scale = scale_length)
AttributeError: module 'piff' has no attribute 'VonKarman'
======================================================================
ERROR: test_gp_interp.test_yaml
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3.6/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/piff_test_helper.py", line 80, in f2
result = f(*args, **kwargs)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/test_gp_interp.py", line 1020, in test_yaml
piff.piffify(config, logger)
File "/usr/lib/python3.6/site-packages/Piff-0.1-py3.6.egg/piff/config.py", line 124, in piffify
psf = piff.PSF.process(config['psf'], logger=logger)
File "/usr/lib/python3.6/site-packages/Piff-0.1-py3.6.egg/piff/psf.py", line 78, in process
kwargs = cls.parseKwargs(config_psf, logger)
File "/usr/lib/python3.6/site-packages/Piff-0.1-py3.6.egg/piff/simplepsf.py", line 86, in parseKwargs
interp = piff.Interp.process(kwargs.pop('interp'), logger=logger)
File "/usr/lib/python3.6/site-packages/Piff-0.1-py3.6.egg/piff/interp.py", line 59, in process
interp_class = getattr(piff, config_interp.pop('type'))
AttributeError: module 'piff' has no attribute 'GPInterp2pcf'
-------------------- >> begin captured stdout << ---------------------
nstars = 25
interpolate <piff.star.Star object at 0x7f6ce837d470>
--------------------- >> end captured stdout << ----------------------
-------------------- >> begin captured logging << --------------------
piff: WARNING: Reading image file input/DECam_00241238_01.fits.fz
piff: WARNING: Reading star catalog input/DECam_00241238_01_psfcat_tb_maxmag_17.0_magcut_3.0_findstars.fits.
piff: WARNING: Read a total of 25 stars from 1 image
piff: WARNING: Iteration 1: Fitting 25 stars
piff: WARNING: Total chisq = 9498.99 / 10845 dof
piff: WARNING: Iteration 2: Fitting 25 stars
piff: WARNING: Total chisq = 9498.60 / 10845 dof
piff: WARNING: Writing PSF to file output/gp_psf.fits
piff: WARNING: Reading image file input/DECam_00241238_01.fits.fz
piff: WARNING: Reading star catalog input/DECam_00241238_01_psfcat_tb_maxmag_17.0_magcut_3.0_findstars.fits.
piff: WARNING: Read a total of 25 stars from 1 image
--------------------- >> end captured logging << ---------------------
======================================================================
ERROR: test_knn_interp.test_config
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3.6/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/piff_test_helper.py", line 80, in f2
result = f(*args, **kwargs)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/test_knn_interp.py", line 135, in test_config
psf = piff.process(config)
AttributeError: module 'piff' has no attribute 'process'
======================================================================
ERROR: test_pixel.test_des_image
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3.6/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/piff_test_helper.py", line 80, in f2
result = f(*args, **kwargs)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/test_pixel.py", line 996, in test_des_image
piff.piffify(config)
File "/usr/lib/python3.6/site-packages/Piff-0.1-py3.6.egg/piff/config.py", line 125, in piffify
psf.fit(stars, wcs, pointing, logger=logger)
File "/usr/lib/python3.6/site-packages/Piff-0.1-py3.6.egg/piff/simplepsf.py", line 136, in fit
self.stars = self.interp.initialize(self.stars, logger=logger)
File "/usr/lib/python3.6/site-packages/Piff-0.1-py3.6.egg/piff/basis_interp.py", line 64, in initialize
c = stars[0].fit.params.copy()
IndexError: list index out of range
-------------------- >> begin captured stdout << ---------------------
start piffify
--------------------- >> end captured stdout << ----------------------
======================================================================
ERROR: test_pixel.test_oversample
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3.6/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/piff_test_helper.py", line 80, in f2
result = f(*args, **kwargs)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/test_pixel.py", line 106, in test_oversample
star = mod.initialize(s).withFlux(flux=np.sum(s.image.array))
File "/usr/lib/python3.6/site-packages/Piff-0.1-py3.6.egg/piff/pixelgrid.py", line 297, in initialize
coeffs, psfx, psfy = self.interp(u/self.du, v/self.du)
TypeError: 'str' object is not callable
======================================================================
ERROR: test_simple.test_single_image
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3.6/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/piff_test_helper.py", line 80, in f2
result = f(*args, **kwargs)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/test_simple.py", line 255, in test_single_image
test_star_list = psf.drawStarList([target])[0]
AttributeError: 'SimplePSF' object has no attribute 'drawStarList'
-------------------- >> begin captured stdout << ---------------------
corrupting star at 567.25 1094.32
corrupting star at 1532.74 1743.83
pos = [[galsim.PositionD(x=123.12, y=345.43), galsim.PositionD(x=345.98, y=567.45), galsim.PositionD(x=1094.94, y=924.29), galsim.PositionD(x=924.15, y=1532.92), galsim.PositionD(x=1743.11, y=888.83), galsim.PositionD(x=888.39, y=1033.19), galsim.PositionD(x=1409.31, y=123.11)]]
pos[0] = [galsim.PositionD(x=123.12, y=345.43), galsim.PositionD(x=345.98, y=567.45), galsim.PositionD(x=1094.94, y=924.29), galsim.PositionD(x=924.15, y=1532.92), galsim.PositionD(x=1743.11, y=888.83), galsim.PositionD(x=888.39, y=1033.19), galsim.PositionD(x=1409.31, y=123.11)]
mean = [ 1.29997811 0.22998813 -0.17001087]
--------------------- >> end captured stdout << ----------------------
-------------------- >> begin captured logging << --------------------
piff: WARNING: Reading image file output/simple_image.fits
piff: WARNING: Reading star catalog output/simple_cat.fits.
piff: WARNING: Reading image file output/simple_image.fits
piff: WARNING: Reading star catalog output/simple_cat.fits.
piff: WARNING: Reading image file output/simple_image.fits
piff: WARNING: Reading star catalog output/simple_cat.fits.
piff: WARNING: Read a total of 7 stars from 1 image
piff: WARNING: Iteration 1: Fitting 7 stars
piff: WARNING: Total chisq = 0.00 / 16107 dof
piff: WARNING: Iteration 2: Fitting 7 stars
piff: WARNING: Total chisq = 0.00 / 16107 dof
--------------------- >> end captured logging << ---------------------
======================================================================
ERROR: test_stats.test_rhostats_config
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3.6/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/piff_test_helper.py", line 80, in f2
result = f(*args, **kwargs)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/test_stats.py", line 328, in test_rhostats_config
piff.plotify(config, logger)
AttributeError: module 'piff' has no attribute 'plotify'
-------------------- >> begin captured logging << --------------------
piff: WARNING: Reading image file output/test_stats_image.fits
piff: WARNING: Reading star catalog output/test_stats_cat.fits.
piff: WARNING: Read a total of 10 stars from 1 image
piff: WARNING: Iteration 1: Fitting 10 stars
piff: WARNING: Total chisq = 0.00 / 23010 dof
piff: WARNING: Iteration 2: Fitting 10 stars
piff: WARNING: Total chisq = 0.00 / 23010 dof
piff: WARNING: Writing PSF to file output/test_rhostats.fits
piff: WARNING: Calculating rho statistics for 10 stars
piff: WARNING: Writing RhoStats plot to file output/test_rhostats.pdf
--------------------- >> end captured logging << ---------------------
======================================================================
ERROR: test_stats.test_shapestats_config
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3.6/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/piff_test_helper.py", line 80, in f2
result = f(*args, **kwargs)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/test_stats.py", line 421, in test_shapestats_config
piff.plotify(config, logger)
AttributeError: module 'piff' has no attribute 'plotify'
-------------------- >> begin captured logging << --------------------
piff: WARNING: Reading image file output/test_stats_image.fits
piff: WARNING: Reading star catalog output/test_stats_cat.fits.
piff: WARNING: Read a total of 10 stars from 1 image
piff: WARNING: Iteration 1: Fitting 10 stars
piff: WARNING: Total chisq = 0.00 / 23010 dof
piff: WARNING: Iteration 2: Fitting 10 stars
piff: WARNING: Total chisq = 0.00 / 23010 dof
piff: WARNING: Writing PSF to file output/test_shapestats.fits
piff: WARNING: Calculating shape histograms for 10 stars
piff: WARNING: Writing ShapeHistogramsStats plot to file output/test_shapestats.pdf
--------------------- >> end captured logging << ---------------------
======================================================================
ERROR: test_stats.test_starstats_config
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3.6/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/piff_test_helper.py", line 80, in f2
result = f(*args, **kwargs)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/test_stats.py", line 478, in test_starstats_config
piff.piffify(config, logger)
File "/usr/lib/python3.6/site-packages/Piff-0.1-py3.6.egg/piff/config.py", line 128, in piffify
output = piff.Output.process(config['output'], logger=logger)
File "/usr/lib/python3.6/site-packages/Piff-0.1-py3.6.egg/piff/output.py", line 50, in process
kwargs = output_handler_class.parseKwargs(config_output,logger=logger)
File "/usr/lib/python3.6/site-packages/Piff-0.1-py3.6.egg/piff/output.py", line 139, in parseKwargs
stats = piff.Stats.process(kwargs.pop('stats'), logger=logger)
File "/usr/lib/python3.6/site-packages/Piff-0.1-py3.6.egg/piff/stats.py", line 66, in process
stats_class = getattr(piff, cfg.pop('type') + 'Stats')
AttributeError: module 'piff' has no attribute 'StarStats'
-------------------- >> begin captured logging << --------------------
piff: WARNING: Reading image file output/test_stats_image.fits
piff: WARNING: Reading star catalog output/test_stats_cat.fits.
piff: WARNING: Read a total of 10 stars from 1 image
piff: WARNING: Iteration 1: Fitting 10 stars
piff: WARNING: Total chisq = 0.00 / 23010 dof
piff: WARNING: Iteration 2: Fitting 10 stars
piff: WARNING: Total chisq = 0.00 / 23010 dof
--------------------- >> end captured logging << ---------------------
======================================================================
ERROR: test_stats.test_twodstats_config
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3.6/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/piff_test_helper.py", line 80, in f2
result = f(*args, **kwargs)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/test_stats.py", line 284, in test_twodstats_config
piff.plotify(config, logger)
AttributeError: module 'piff' has no attribute 'plotify'
-------------------- >> begin captured logging << --------------------
piff: WARNING: Reading image file output/test_stats_image.fits
piff: WARNING: Reading star catalog output/test_stats_cat.fits.
piff: WARNING: Read a total of 10 stars from 1 image
piff: WARNING: Iteration 1: Fitting 10 stars
piff: WARNING: Total chisq = 0.00 / 23010 dof
piff: WARNING: Iteration 2: Fitting 10 stars
piff: WARNING: Total chisq = 0.00 / 23010 dof
piff: WARNING: Writing PSF to file output/test_twodstats.fits
piff: WARNING: Writing TwoDHistStats plot to file output/test_twodhiststats.pdf
piff: WARNING: Writing TwoDHistStats plot to file output/test_twodhiststats_std.pdf
--------------------- >> end captured logging << ---------------------
======================================================================
ERROR: test_wcs.test_focal
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3.6/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/piff_test_helper.py", line 80, in f2
result = f(*args, **kwargs)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/test_wcs.py", line 133, in test_focal
psf = piff.process(config)
AttributeError: module 'piff' has no attribute 'process'
======================================================================
ERROR: test_wcs.test_single
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3.6/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/piff_test_helper.py", line 80, in f2
result = f(*args, **kwargs)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/test_wcs.py", line 333, in test_single
psf = piff.process(config)
AttributeError: module 'piff' has no attribute 'process'
======================================================================
ERROR: test_wcs.test_wrongwcs
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3.6/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/piff_test_helper.py", line 80, in f2
result = f(*args, **kwargs)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/test_wcs.py", line 232, in test_wrongwcs
psf = piff.process(config)
AttributeError: module 'piff' has no attribute 'process'
======================================================================
FAIL: test_stats.test_shift_cmap
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python3.6/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/piff_test_helper.py", line 80, in f2
result = f(*args, **kwargs)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git/tests/test_stats.py", line 97, in test_shift_cmap
assert cmap == cm.Reds
AssertionError
----------------------------------------------------------------------
Ran 75 tests in 88.241s
FAILED (errors=19, failures=1)
==> WARNING: Tests failed
Failure: ImportError (No module named piff) ... ERROR
Failure: ImportError (No module named piff) ... ERROR
Failure: ImportError (No module named piff) ... ERROR
Failure: ImportError (No module named piff) ... ERROR
Failure: ImportError (No module named piff) ... ERROR
Failure: ImportError (No module named piff) ... ERROR
Failure: ImportError (No module named piff) ... ERROR
Failure: ImportError (No module named piff) ... ERROR
Failure: ImportError (No module named piff) ... ERROR
Failure: ImportError (No module named piff) ... ERROR
Failure: ImportError (No module named piff) ... ERROR
======================================================================
ERROR: Failure: ImportError (No module named piff)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/site-packages/nose/loader.py", line 418, in loadTestsFromName
addr.filename, addr.module)
File "/usr/lib/python2.7/site-packages/nose/importer.py", line 47, in importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python2.7/site-packages/nose/importer.py", line 94, in importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git-py2/tests/test_gp_interp.py", line 19, in <module>
import piff
ImportError: No module named piff
======================================================================
ERROR: Failure: ImportError (No module named piff)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/site-packages/nose/loader.py", line 418, in loadTestsFromName
addr.filename, addr.module)
File "/usr/lib/python2.7/site-packages/nose/importer.py", line 47, in importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python2.7/site-packages/nose/importer.py", line 94, in importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git-py2/tests/test_gsobject_model.py", line 17, in <module>
import piff
ImportError: No module named piff
======================================================================
ERROR: Failure: ImportError (No module named piff)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/site-packages/nose/loader.py", line 418, in loadTestsFromName
addr.filename, addr.module)
File "/usr/lib/python2.7/site-packages/nose/importer.py", line 47, in importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python2.7/site-packages/nose/importer.py", line 94, in importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git-py2/tests/test_input.py", line 20, in <module>
import piff
ImportError: No module named piff
======================================================================
ERROR: Failure: ImportError (No module named piff)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/site-packages/nose/loader.py", line 418, in loadTestsFromName
addr.filename, addr.module)
File "/usr/lib/python2.7/site-packages/nose/importer.py", line 47, in importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python2.7/site-packages/nose/importer.py", line 94, in importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git-py2/tests/test_knn_interp.py", line 18, in <module>
import piff
ImportError: No module named piff
======================================================================
ERROR: Failure: ImportError (No module named piff)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/site-packages/nose/loader.py", line 418, in loadTestsFromName
addr.filename, addr.module)
File "/usr/lib/python2.7/site-packages/nose/importer.py", line 47, in importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python2.7/site-packages/nose/importer.py", line 94, in importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git-py2/tests/test_optics.py", line 17, in <module>
import piff
ImportError: No module named piff
======================================================================
ERROR: Failure: ImportError (No module named piff)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/site-packages/nose/loader.py", line 418, in loadTestsFromName
addr.filename, addr.module)
File "/usr/lib/python2.7/site-packages/nose/importer.py", line 47, in importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python2.7/site-packages/nose/importer.py", line 94, in importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git-py2/tests/test_pixel.py", line 17, in <module>
import piff
ImportError: No module named piff
======================================================================
ERROR: Failure: ImportError (No module named piff)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/site-packages/nose/loader.py", line 418, in loadTestsFromName
addr.filename, addr.module)
File "/usr/lib/python2.7/site-packages/nose/importer.py", line 47, in importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python2.7/site-packages/nose/importer.py", line 94, in importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git-py2/tests/test_poly.py", line 17, in <module>
import piff
ImportError: No module named piff
======================================================================
ERROR: Failure: ImportError (No module named piff)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/site-packages/nose/loader.py", line 418, in loadTestsFromName
addr.filename, addr.module)
File "/usr/lib/python2.7/site-packages/nose/importer.py", line 47, in importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python2.7/site-packages/nose/importer.py", line 94, in importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git-py2/tests/test_simple.py", line 18, in <module>
import piff
ImportError: No module named piff
======================================================================
ERROR: Failure: ImportError (No module named piff)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/site-packages/nose/loader.py", line 418, in loadTestsFromName
addr.filename, addr.module)
File "/usr/lib/python2.7/site-packages/nose/importer.py", line 47, in importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python2.7/site-packages/nose/importer.py", line 94, in importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git-py2/tests/test_star.py", line 20, in <module>
import piff
ImportError: No module named piff
======================================================================
ERROR: Failure: ImportError (No module named piff)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/site-packages/nose/loader.py", line 418, in loadTestsFromName
addr.filename, addr.module)
File "/usr/lib/python2.7/site-packages/nose/importer.py", line 47, in importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python2.7/site-packages/nose/importer.py", line 94, in importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git-py2/tests/test_stats.py", line 17, in <module>
import piff
ImportError: No module named piff
======================================================================
ERROR: Failure: ImportError (No module named piff)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/site-packages/nose/loader.py", line 418, in loadTestsFromName
addr.filename, addr.module)
File "/usr/lib/python2.7/site-packages/nose/importer.py", line 47, in importFromPath
return self.importFromDir(dir_path, fqname)
File "/usr/lib/python2.7/site-packages/nose/importer.py", line 94, in importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/data/packages/python-piff-git/python-piff-git/src/python-piff-git-py2/tests/test_wcs.py", line 18, in <module>
import piff
ImportError: No module named piff
----------------------------------------------------------------------
Ran 11 tests in 0.381s
FAILED (errors=11)
==> WARNING: Tests failed
==> Entering fakeroot environment...
==> Starting package_python-piff-git()...
Using setuptools version 38.4.0
Python version = 3.6.4 (default, Jan 5 2018, 02:35:40)
[GCC 7.2.1 20171224]
packages = ['piff', 'piff.des']
Checking that GalSim can be imported
GalSim is version 1.5.1
Piff version is 0.1
running install
running build
running build_py
running build_scripts
running install_lib
creating /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr
creating /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib
creating /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6
creating /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages
creating /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff
copying build/lib/piff/star.py -> /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff
copying build/lib/piff/optical_model.py -> /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff
copying build/lib/piff/pixelgrid.py -> /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff
copying build/lib/piff/twod_stats.py -> /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff
copying build/lib/piff/singlechip.py -> /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff
copying build/lib/piff/gp_interp_2pcf.py -> /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff
copying build/lib/piff/simplepsf.py -> /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff
copying build/lib/piff/interp.py -> /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff
copying build/lib/piff/input.py -> /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff
copying build/lib/piff/_version.py -> /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff
copying build/lib/piff/kernel.py -> /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff
creating /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/des
copying build/lib/piff/des/decaminfo.py -> /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/des
copying build/lib/piff/des/__init__.py -> /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/des
copying build/lib/piff/des/decam_wavefront.py -> /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/des
copying build/lib/piff/gsobject_model.py -> /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff
copying build/lib/piff/polynomial_interp.py -> /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff
copying build/lib/piff/mean_interp.py -> /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff
copying build/lib/piff/output.py -> /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff
copying build/lib/piff/stats.py -> /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff
copying build/lib/piff/basis_interp.py -> /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff
copying build/lib/piff/__init__.py -> /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff
copying build/lib/piff/config.py -> /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff
copying build/lib/piff/psf.py -> /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff
copying build/lib/piff/util.py -> /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff
copying build/lib/piff/model.py -> /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff
copying build/lib/piff/outliers.py -> /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff
copying build/lib/piff/star_stats.py -> /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff
copying build/lib/piff/gp_interp.py -> /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff
copying build/lib/piff/knn_interp.py -> /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/star.py to star.cpython-36.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/optical_model.py to optical_model.cpython-36.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/pixelgrid.py to pixelgrid.cpython-36.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/twod_stats.py to twod_stats.cpython-36.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/singlechip.py to singlechip.cpython-36.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/gp_interp_2pcf.py to gp_interp_2pcf.cpython-36.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/simplepsf.py to simplepsf.cpython-36.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/interp.py to interp.cpython-36.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/input.py to input.cpython-36.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/_version.py to _version.cpython-36.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/kernel.py to kernel.cpython-36.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/des/decaminfo.py to decaminfo.cpython-36.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/des/__init__.py to __init__.cpython-36.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/des/decam_wavefront.py to decam_wavefront.cpython-36.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/gsobject_model.py to gsobject_model.cpython-36.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/polynomial_interp.py to polynomial_interp.cpython-36.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/mean_interp.py to mean_interp.cpython-36.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/output.py to output.cpython-36.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/stats.py to stats.cpython-36.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/basis_interp.py to basis_interp.cpython-36.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/__init__.py to __init__.cpython-36.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/config.py to config.cpython-36.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/psf.py to psf.cpython-36.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/util.py to util.cpython-36.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/model.py to model.cpython-36.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/outliers.py to outliers.cpython-36.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/star_stats.py to star_stats.cpython-36.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/gp_interp.py to gp_interp.cpython-36.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/piff/knn_interp.py to knn_interp.cpython-36.pyc
writing byte-compilation script '/tmp/tmp0t9d5n08.py'
/usr/bin/python /tmp/tmp0t9d5n08.py
removing /tmp/tmp0t9d5n08.py
running install_egg_info
running egg_info
creating Piff.egg-info
writing Piff.egg-info/PKG-INFO
writing dependency_links to Piff.egg-info/dependency_links.txt
writing requirements to Piff.egg-info/requires.txt
writing top-level names to Piff.egg-info/top_level.txt
writing manifest file 'Piff.egg-info/SOURCES.txt'
reading manifest file 'Piff.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.h' under directory 'include'
writing manifest file 'Piff.egg-info/SOURCES.txt'
Copying Piff.egg-info to /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/lib/python3.6/site-packages/Piff-0.1-py3.6.egg-info
running install_scripts
creating /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/bin
copying build/scripts-3.6/plotify -> /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/bin
copying build/scripts-3.6/piffify -> /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/bin
changing mode of /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/bin/plotify to 755
changing mode of /data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/bin/piffify to 755
WARNING: The Piff executables were installed in a directory not in your PATH
If you want to use the executables, you should add the directory
/data/packages/python-piff-git/python-piff-git/pkg/python-piff-git/usr/bin
to your path. The current path is
/usr/local/sbin:/usr/local/bin:/usr/bin:/usr/lib/jvm/default/bin:/usr/bin/site_perl:/usr/bin/vendor_perl:/usr/bin/core_perl
Alternatively, you can specify a different prefix with --prefix=PREFIX,
in which case the scripts will be installed in PREFIX/bin.
If you are installing via pip use --install-option="--prefix=PREFIX"
==> Tidying install...
-> Removing libtool files...
-> Purging unwanted files...
-> Removing static library files...
-> Stripping unneeded symbols from binaries and libraries...
-> Compressing man and info pages...
==> Checking for packaging issue...
==> Creating package "python-piff-git"...
-> Generating .PKGINFO file...
-> Generating .BUILDINFO file...
-> Generating .MTREE file...
-> Compressing package...
==> Starting package_python2-piff-git()...
Using setuptools version 38.4.0
Python version = 2.7.14 (default, Jan 5 2018, 10:41:29)
[GCC 7.2.1 20171224]
packages = ['piff', 'piff.des']
Checking that GalSim can be imported
GalSim is version 1.5.1
Piff version is 0.1
running install
running build
running build_py
running build_scripts
running install_lib
creating /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr
creating /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib
creating /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7
creating /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages
creating /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff
copying build/lib/piff/star.py -> /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff
copying build/lib/piff/optical_model.py -> /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff
copying build/lib/piff/pixelgrid.py -> /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff
copying build/lib/piff/twod_stats.py -> /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff
copying build/lib/piff/singlechip.py -> /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff
copying build/lib/piff/gp_interp_2pcf.py -> /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff
copying build/lib/piff/simplepsf.py -> /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff
copying build/lib/piff/interp.py -> /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff
copying build/lib/piff/input.py -> /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff
copying build/lib/piff/_version.py -> /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff
copying build/lib/piff/kernel.py -> /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff
creating /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/des
copying build/lib/piff/des/decaminfo.py -> /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/des
copying build/lib/piff/des/__init__.py -> /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/des
copying build/lib/piff/des/decam_wavefront.py -> /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/des
copying build/lib/piff/gsobject_model.py -> /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff
copying build/lib/piff/polynomial_interp.py -> /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff
copying build/lib/piff/mean_interp.py -> /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff
copying build/lib/piff/output.py -> /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff
copying build/lib/piff/stats.py -> /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff
copying build/lib/piff/basis_interp.py -> /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff
copying build/lib/piff/__init__.py -> /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff
copying build/lib/piff/config.py -> /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff
copying build/lib/piff/psf.py -> /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff
copying build/lib/piff/util.py -> /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff
copying build/lib/piff/model.py -> /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff
copying build/lib/piff/outliers.py -> /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff
copying build/lib/piff/star_stats.py -> /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff
copying build/lib/piff/gp_interp.py -> /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff
copying build/lib/piff/knn_interp.py -> /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/star.py to star.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/optical_model.py to optical_model.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/pixelgrid.py to pixelgrid.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/twod_stats.py to twod_stats.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/singlechip.py to singlechip.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/gp_interp_2pcf.py to gp_interp_2pcf.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/simplepsf.py to simplepsf.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/interp.py to interp.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/input.py to input.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/_version.py to _version.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/kernel.py to kernel.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/des/decaminfo.py to decaminfo.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/des/__init__.py to __init__.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/des/decam_wavefront.py to decam_wavefront.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/gsobject_model.py to gsobject_model.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/polynomial_interp.py to polynomial_interp.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/mean_interp.py to mean_interp.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/output.py to output.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/stats.py to stats.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/basis_interp.py to basis_interp.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/__init__.py to __init__.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/config.py to config.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/psf.py to psf.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/util.py to util.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/model.py to model.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/outliers.py to outliers.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/star_stats.py to star_stats.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/gp_interp.py to gp_interp.pyc
byte-compiling /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/piff/knn_interp.py to knn_interp.pyc
writing byte-compilation script '/tmp/tmpGPYLPq.py'
/usr/bin/python2 -O /tmp/tmpGPYLPq.py
removing /tmp/tmpGPYLPq.py
running install_egg_info
running egg_info
creating Piff.egg-info
writing requirements to Piff.egg-info/requires.txt
writing Piff.egg-info/PKG-INFO
writing top-level names to Piff.egg-info/top_level.txt
writing dependency_links to Piff.egg-info/dependency_links.txt
writing manifest file 'Piff.egg-info/SOURCES.txt'
reading manifest file 'Piff.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.h' under directory 'include'
writing manifest file 'Piff.egg-info/SOURCES.txt'
Copying Piff.egg-info to /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/lib/python2.7/site-packages/Piff-0.1-py2.7.egg-info
running install_scripts
creating /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/bin
copying build/scripts-2.7/plotify -> /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/bin
copying build/scripts-2.7/piffify -> /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/bin
changing mode of /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/bin/plotify to 755
changing mode of /data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/bin/piffify to 755
WARNING: The Piff executables were installed in a directory not in your PATH
If you want to use the executables, you should add the directory
/data/packages/python-piff-git/python-piff-git/pkg/python2-piff-git/usr/bin
to your path. The current path is
/usr/local/sbin:/usr/local/bin:/usr/bin:/usr/lib/jvm/default/bin:/usr/bin/site_perl:/usr/bin/vendor_perl:/usr/bin/core_perl
Alternatively, you can specify a different prefix with --prefix=PREFIX,
in which case the scripts will be installed in PREFIX/bin.
If you are installing via pip use --install-option="--prefix=PREFIX"
==> Tidying install...
-> Removing libtool files...
-> Purging unwanted files...
-> Removing static library files...
-> Stripping unneeded symbols from binaries and libraries...
-> Compressing man and info pages...
==> Checking for packaging issue...
==> Creating package "python2-piff-git"...
-> Generating .PKGINFO file...
-> Generating .BUILDINFO file...
-> Generating .MTREE file...
-> Compressing package...
==> Leaving fakeroot environment.
==> Finished making: python-piff-git v0.1.0.r527.250432f-1 (Tue Jan 30 23:05:06 -02 2018)while it was running makepkg -s . And after installing both packages (pacman -U snapshot.xz) I use nosetest2 -v and I got
[andres@PAN tests]$ nosetests -v
test_gp_interp.test_anisotropic_guess ... ok
test_gp_interp.test_anisotropic_limit ... ok
test_gp_interp.test_anisotropic_rbf_kernel ... ok
test_gp_interp.test_constant_psf ... ok
test_gp_interp.test_gp_with_kernels ... ok
test_gp_interp.test_grf_psf ... ok
test_gp_interp.test_guess ... ok
test_gp_interp.test_guess_2pcf ... ok
test_gp_interp.test_polynomial_psf ... ok
test_gp_interp.test_vonkarman_kernel ... ok
test_gp_interp.test_vonkarman_psf ... ok
test_gp_interp.test_yaml ... ok
test_gsobject_model.test_center ... ok
test_gsobject_model.test_direct ... ok
test_gsobject_model.test_gradient ... ok
test_gsobject_model.test_gradient_center ... ok
test_gsobject_model.test_interp ... ok
test_gsobject_model.test_missing ... ok
test_gsobject_model.test_simple ... ok
test_input.test_basic ... ok
test_input.test_chipnum ... ok
test_input.test_cols ... ok
test_input.test_invalid ... ok
test_input.test_pointing ... ok
test_input.test_stars ... ok
test_input.test_weight ... ok
test_knn_interp.test_config ... ok
test_knn_interp.test_decam_disk ... ok
test_knn_interp.test_decam_wavefront ... ok
test_knn_interp.test_decaminfo ... ok
test_knn_interp.test_disk ... ok
test_knn_interp.test_init ... ok
test_knn_interp.test_interp ... ok
test_optics.test_disk ... ok
test_optics.test_gaussian ... ok
test_optics.test_init ... ok
test_optics.test_kolmogorov ... ok
test_optics.test_optical ... ok
test_optics.test_pupil_im ... ok
test_optics.test_shearing ... ok
test_pixel.test_center ... ok
test_pixel.test_des_image ... ok
test_pixel.test_gradient ... ok
test_pixel.test_interp ... ok
test_pixel.test_missing ... ok
test_pixel.test_oversample ... ok
test_pixel.test_simplest ... ok
test_pixel.test_single_image ... ok
test_pixel.test_undersamp ... ok
test_pixel.test_undersamp_drift ... ok
test_pixel.test_undersamp_shift ... ok
test_poly.test_poly_guess ... ok
test_poly.test_poly_indexing ... ok
test_poly.test_poly_linear ... ok
test_poly.test_poly_load_err ... ok
test_poly.test_poly_load_save ... ok
test_poly.test_poly_mean ... ok
test_poly.test_poly_quadratic ... ok
test_poly.test_poly_raise ... ok
test_simple.test_Gaussian ... ok
test_simple.test_Mean ... ok
test_simple.test_single_image ... ok
test_star.test_celestial ... ok
test_star.test_euclidean ... ok
test_star.test_init ... ok
test_star.test_io ... ok
test_stats.test_rhostats_config ... ok
test_stats.test_shapestats_config ... ok
test_stats.test_shift_cmap ... ok
test_stats.test_starstats_config ... ok
test_stats.test_twodstats ... ok
test_stats.test_twodstats_config ... ok
test_wcs.test_focal ... ok
test_wcs.test_single ... ok
test_wcs.test_wrongwcs ... ok
----------------------------------------------------------------------
Ran 75 tests in 134.810s
OK2. If I comment the line 60. ( rm -rf "$pkgdir"/usr/bin ) I cannot install simultaneously python2-piff-git and python-piff-git. because the binaries piffify and plotify are already in the file sytem. However, commenting that line and installing each package one at the time, nosetest passes perfectly. I thought the solution was to use line 60 or 59 and 58 (rename the binaries). However the nosetest did not pass all. Here follows the output.
[andres@PAN tests]$ nosetests2 -v
test_gp_interp.test_anisotropic_guess ... ok
test_gp_interp.test_anisotropic_limit ... ok
test_gp_interp.test_anisotropic_rbf_kernel ... ok
test_gp_interp.test_constant_psf ... ok
test_gp_interp.test_gp_with_kernels ... ok
test_gp_interp.test_grf_psf ... ok
test_gp_interp.test_guess ... ok
test_gp_interp.test_guess_2pcf ... ok
test_gp_interp.test_polynomial_psf ... ok
test_gp_interp.test_vonkarman_kernel ... ok
test_gp_interp.test_vonkarman_psf ... ok
test_gp_interp.test_yaml ... ok
test_gsobject_model.test_center ... ok
test_gsobject_model.test_direct ... ok
test_gsobject_model.test_gradient ... ok
test_gsobject_model.test_gradient_center ... ok
test_gsobject_model.test_interp ... ok
test_gsobject_model.test_missing ... ok
test_gsobject_model.test_simple ... ok
test_input.test_basic ... ok
test_input.test_chipnum ... ok
test_input.test_cols ... ok
test_input.test_invalid ... ok
test_input.test_pointing ... ok
test_input.test_stars ... ok
test_input.test_weight ... ok
test_knn_interp.test_config ... ok
test_knn_interp.test_decam_disk ... ok
test_knn_interp.test_decam_wavefront ... ok
test_knn_interp.test_decaminfo ... ok
test_knn_interp.test_disk ... ok
test_knn_interp.test_init ... ok
test_knn_interp.test_interp ... ok
test_optics.test_disk ... ok
test_optics.test_gaussian ... ok
test_optics.test_init ... ok
test_optics.test_kolmogorov ... ok
test_optics.test_optical ... ok
test_optics.test_pupil_im ... ok
test_optics.test_shearing ... ok
test_pixel.test_center ... ok
test_pixel.test_des_image ... ok
test_pixel.test_gradient ... ok
test_pixel.test_interp ... ok
test_pixel.test_missing ... ok
test_pixel.test_oversample ... ok
test_pixel.test_simplest ... ok
test_pixel.test_single_image ... ok
test_pixel.test_undersamp ... ok
test_pixel.test_undersamp_drift ... ok
test_pixel.test_undersamp_shift ... ok
test_poly.test_poly_guess ... ok
test_poly.test_poly_indexing ... ok
test_poly.test_poly_linear ... ok
test_poly.test_poly_load_err ... ok
test_poly.test_poly_load_save ... ok
test_poly.test_poly_mean ... ok
test_poly.test_poly_quadratic ... ok
test_poly.test_poly_raise ... ok
test_simple.test_Gaussian ... ok
test_simple.test_Mean ... ok
test_simple.test_single_image ... ERROR
test_star.test_celestial ... ok
test_star.test_euclidean ... ok
test_star.test_init ... ok
test_star.test_io ... ok
test_stats.test_rhostats_config ... ERROR
test_stats.test_shapestats_config ... ok
test_stats.test_shift_cmap ... ok
test_stats.test_starstats_config ... ok
test_stats.test_twodstats ... ok
test_stats.test_twodstats_config ... ok
test_wcs.test_focal ... ok
test_wcs.test_single ... ok
test_wcs.test_wrongwcs ... ok
======================================================================
ERROR: test_simple.test_single_image
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/data/.Trash-1000/files/src.8/python-piff-git/tests/piff_test_helper.py", line 80, in f2
result = f(*args, **kwargs)
File "/data/.Trash-1000/files/src.8/python-piff-git/tests/test_simple.py", line 288, in test_single_image
psf = piff.read(psf_file)
File "/usr/lib/python2.7/site-packages/piff/psf.py", line 410, in read
return PSF.read(file_name, logger=logger)
File "/usr/lib/python2.7/site-packages/piff/psf.py", line 233, in read
return cls._read(f, 'psf', logger)
File "/usr/lib/python2.7/site-packages/piff/psf.py", line 263, in _read
wcs, pointing = cls.readWCS(fits, extname + '_wcs', logger=logger)
File "/usr/lib/python2.7/site-packages/piff/psf.py", line 387, in readWCS
wcs_list = [ pickle.loads(s) for s in wcs_str ] # Convert back into wcs objects
ValueError: unsupported pickle protocol: 3
-------------------- >> begin captured stdout << ---------------------
corrupting star at 567.25 1094.32
corrupting star at 1532.74 1743.83
pos = [[galsim.PositionD(x=123.12, y=345.43), galsim.PositionD(x=345.98, y=567.45), galsim.PositionD(x=1094.94, y=924.29), galsim.PositionD(x=924.15, y=1532.92), galsim.PositionD(x=1743.11, y=888.83), galsim.PositionD(x=888.39, y=1033.19), galsim.PositionD(x=1409.31, y=123.11)]]
pos[0] = [galsim.PositionD(x=123.12, y=345.43), galsim.PositionD(x=345.98, y=567.45), galsim.PositionD(x=1094.94, y=924.29), galsim.PositionD(x=924.15, y=1532.92), galsim.PositionD(x=1743.11, y=888.83), galsim.PositionD(x=888.39, y=1033.19), galsim.PositionD(x=1409.31, y=123.11)]
mean = [ 1.29997811 0.22998813 -0.17001087]
--------------------- >> end captured stdout << ----------------------
-------------------- >> begin captured logging << --------------------
piff: WARNING: Reading image file output/simple_image.fits
piff: WARNING: Reading star catalog output/simple_cat.fits.
piff: WARNING: Reading image file output/simple_image.fits
piff: WARNING: Reading star catalog output/simple_cat.fits.
piff: WARNING: Reading image file output/simple_image.fits
piff: WARNING: Reading star catalog output/simple_cat.fits.
piff: WARNING: Read a total of 7 stars from 1 image
piff: WARNING: Iteration 1: Fitting 7 stars
piff: WARNING: Total chisq = 0.00 / 16107 dof
piff: WARNING: Iteration 2: Fitting 7 stars
piff: WARNING: Total chisq = 0.00 / 16107 dof
piff: WARNING: Writing PSF to file output/simple_psf.fits
piff: WARNING: Reading PSF from file output/simple_psf.fits
piff: WARNING: Reading image file output/simple_image.fits
piff: WARNING: Reading star catalog output/simple_cat.fits.
piff: WARNING: Read a total of 7 stars from 1 image
piff: WARNING: Iteration 1: Fitting 7 stars
piff: WARNING: Total chisq = 0.00 / 16107 dof
piff: WARNING: Iteration 2: Fitting 7 stars
piff: WARNING: Total chisq = 0.00 / 16107 dof
piff: WARNING: Writing PSF to file output/simple_psf.fits
--------------------- >> end captured logging << ---------------------
======================================================================
ERROR: test_stats.test_rhostats_config
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/data/.Trash-1000/files/src.8/python-piff-git/tests/piff_test_helper.py", line 80, in f2
result = f(*args, **kwargs)
File "/data/.Trash-1000/files/src.8/python-piff-git/tests/test_stats.py", line 377, in test_rhostats_config
piff.plotify(config)
File "/usr/lib/python2.7/site-packages/piff/config.py", line 186, in plotify
psf = PSF.read(file_name, logger=logger)
File "/usr/lib/python2.7/site-packages/piff/psf.py", line 233, in read
return cls._read(f, 'psf', logger)
File "/usr/lib/python2.7/site-packages/piff/psf.py", line 263, in _read
wcs, pointing = cls.readWCS(fits, extname + '_wcs', logger=logger)
File "/usr/lib/python2.7/site-packages/piff/psf.py", line 387, in readWCS
wcs_list = [ pickle.loads(s) for s in wcs_str ] # Convert back into wcs objects
ValueError: unsupported pickle protocol: 3
-------------------- >> begin captured logging << --------------------
piff: WARNING: Reading image file output/test_stats_image.fits
piff: WARNING: Reading star catalog output/test_stats_cat.fits.
piff: WARNING: Read a total of 10 stars from 1 image
piff: WARNING: Iteration 1: Fitting 10 stars
piff: WARNING: Total chisq = 0.00 / 23010 dof
piff: WARNING: Iteration 2: Fitting 10 stars
piff: WARNING: Total chisq = 0.00 / 23010 dof
piff: WARNING: Writing PSF to file output/test_rhostats.fits
piff: WARNING: Calculating rho statistics for 10 stars
piff: WARNING: Writing RhoStats plot to file output/test_rhostats.pdf
piff: WARNING: Reading image file output/test_stats_image.fits
piff: WARNING: Reading star catalog output/test_stats_cat.fits.
piff: WARNING: Read a total of 10 stars from 1 image
piff: WARNING: Reading PSF from file output/test_rhostats.fits
piff: WARNING: Calculating rho statistics for 10 stars
piff: WARNING: Writing RhoStats plot to file output/test_rhostats.pdf
piff: WARNING: Reading image file output/test_stats_image.fits
piff: WARNING: Reading star catalog output/test_stats_cat.fits.
piff: WARNING: Read a total of 10 stars from 1 image
--------------------- >> end captured logging << ---------------------
----------------------------------------------------------------------
Ran 75 tests in 138.132s
FAILED (errors=2)it is worth to mention, that this is only for the python2-piff-git package, python2-piff-git runs fine.
Thanks in advance.
Cheers,
Offline
#2 2018-01-31 07:42:28
- V1del
- Forum Moderator
- Registered: 2012-10-16
- Posts: 21,743
Re: Same binary in split PKGBUILD
Moving to AUR issues.
Offline
#3 2018-01-31 07:45:32
- Scimmia
- Fellow
- Registered: 2012-09-01
- Posts: 11,565
Re: Same binary in split PKGBUILD
Is this a program, a library, or both? A quick glance makes me think it's more of a program, in which case, you'd just call it piff-git and build with py3 and call it a day.
Online
#4 2018-01-31 10:29:22
- andalenavals
- Member
- Registered: 2017-10-30
- Posts: 39
Re: Same binary in split PKGBUILD
Scimmia wrote:
Is this a program, a library, or both? A quick glance makes me think it's more of a program, in which case, you'd just call it piff-git and build with py3 and call it a day.
Offline
#5 2018-01-31 18:20:41
- andalenavals
- Member
- Registered: 2017-10-30
- Posts: 39
Re: Same binary in split PKGBUILD
What makes the problem more interesting is that if I only install python2-piff-git I get one error less when running the test.
test_poly.test_poly_load_err ... ok
test_poly.test_poly_load_save ... ok
test_poly.test_poly_mean ... ok
test_poly.test_poly_quadratic ... ok
test_poly.test_poly_raise ... ok
test_simple.test_Gaussian ... ok
test_simple.test_Mean ... ok
test_simple.test_single_image ... /usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'obj.centroid() has been deprecated since GalSim version 1.5. Use obj.centroid instead. centroid is now a property rather than a function. Although note that the return type is not a PositionD (so you can get this message), but acts in most ways like a PositionD and is convertible into one using obj.centroid.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.trueCenter() has been deprecated since GalSim version 1.5. Use image.true_center instead.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.trueCenter() has been deprecated since GalSim version 1.5. Use image.true_center instead.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
ERROR
test_star.test_celestial ... ok
test_star.test_euclidean ... ok
test_star.test_init ... ok
test_star.test_io ... ok
test_stats.test_rhostats_config ... /usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'obj.centroid() has been deprecated since GalSim version 1.5. Use obj.centroid instead. centroid is now a property rather than a function. Although note that the return type is not a PositionD (so you can get this message), but acts in most ways like a PositionD and is convertible into one using obj.centroid.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.trueCenter() has been deprecated since GalSim version 1.5. Use image.true_center instead.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.trueCenter() has been deprecated since GalSim version 1.5. Use image.true_center instead.')
warnings.warn(s, GalSimDeprecationWarning)
/usr/lib/python3.6/site-packages/galsim/deprecated/__init__.py:53: GalSimDeprecationWarning: (GalSimDeprecationWarning(...), 'image.center() has been deprecated since GalSim version 1.5. Use image.center instead. center is now a property rather than a function. Although note that the return type is not a PositionI (so you can get this message), but acts in most ways like a PositionI and is convertible into one using image.center.pos if needed.')
warnings.warn(s, GalSimDeprecationWarning)
Traceback (most recent call last):
File "/data/packages/python-piff-git/Piff/scripts/plotify", line 92, in <module>
main()
File "/data/packages/python-piff-git/Piff/scripts/plotify", line 89, in main
piff.plotify(config, logger)
AttributeError: module 'piff' has no attribute 'plotify'
FAIL
test_stats.test_shapestats_config ... ok
test_stats.test_shift_cmap ... ok
test_stats.test_starstats_config ... ok
test_stats.test_twodstats ... ok
test_stats.test_twodstats_config ... ok
test_wcs.test_focal ... ok
test_wcs.test_single ... ok
test_wcs.test_wrongwcs ... ok
======================================================================
ERROR: test_simple.test_single_image
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/data/packages/python-piff-git/Piff/tests/piff_test_helper.py", line 80, in f2
result = f(*args, **kwargs)
File "/data/packages/python-piff-git/Piff/tests/test_simple.py", line 288, in test_single_image
psf = piff.read(psf_file)
File "/usr/lib/python2.7/site-packages/piff/psf.py", line 410, in read
return PSF.read(file_name, logger=logger)
File "/usr/lib/python2.7/site-packages/piff/psf.py", line 233, in read
return cls._read(f, 'psf', logger)
File "/usr/lib/python2.7/site-packages/piff/psf.py", line 263, in _read
wcs, pointing = cls.readWCS(fits, extname + '_wcs', logger=logger)
File "/usr/lib/python2.7/site-packages/piff/psf.py", line 387, in readWCS
wcs_list = [ pickle.loads(s) for s in wcs_str ] # Convert back into wcs objects
ValueError: unsupported pickle protocol: 3
-------------------- >> begin captured stdout << ---------------------
corrupting star at 567.25 1094.32
corrupting star at 1532.74 1743.83
pos = [[galsim.PositionD(x=123.12, y=345.43), galsim.PositionD(x=345.98, y=567.45), galsim.PositionD(x=1094.94, y=924.29), galsim.PositionD(x=924.15, y=1532.92), galsim.PositionD(x=1743.11, y=888.83), galsim.PositionD(x=888.39, y=1033.19), galsim.PositionD(x=1409.31, y=123.11)]]
pos[0] = [galsim.PositionD(x=123.12, y=345.43), galsim.PositionD(x=345.98, y=567.45), galsim.PositionD(x=1094.94, y=924.29), galsim.PositionD(x=924.15, y=1532.92), galsim.PositionD(x=1743.11, y=888.83), galsim.PositionD(x=888.39, y=1033.19), galsim.PositionD(x=1409.31, y=123.11)]
mean = [ 1.29997811 0.22998813 -0.17001087]
Warning: The script piffify is not in the path.
(' Using explcit path for the test:', '/data/packages/python-piff-git/Piff/scripts/piffify')
--------------------- >> end captured stdout << ----------------------
-------------------- >> begin captured logging << --------------------
piff: WARNING: Reading image file output/simple_image.fits
piff: WARNING: Reading star catalog output/simple_cat.fits.
piff: WARNING: Reading image file output/simple_image.fits
piff: WARNING: Reading star catalog output/simple_cat.fits.
piff: WARNING: Reading image file output/simple_image.fits
piff: WARNING: Reading star catalog output/simple_cat.fits.
piff: WARNING: Read a total of 7 stars from 1 image
piff: WARNING: Iteration 1: Fitting 7 stars
piff: WARNING: Total chisq = 0.00 / 16107 dof
piff: WARNING: Iteration 2: Fitting 7 stars
piff: WARNING: Total chisq = 0.00 / 16107 dof
piff: WARNING: Writing PSF to file output/simple_psf.fits
piff: WARNING: Reading PSF from file output/simple_psf.fits
piff: WARNING: Reading image file output/simple_image.fits
piff: WARNING: Reading star catalog output/simple_cat.fits.
piff: WARNING: Read a total of 7 stars from 1 image
piff: WARNING: Iteration 1: Fitting 7 stars
piff: WARNING: Total chisq = 0.00 / 16107 dof
piff: WARNING: Iteration 2: Fitting 7 stars
piff: WARNING: Total chisq = 0.00 / 16107 dof
piff: WARNING: Writing PSF to file output/simple_psf.fits
--------------------- >> end captured logging << ---------------------
======================================================================
FAIL: test_stats.test_rhostats_config
----------------------------------------------------------------------
Traceback (most recent call last):
File "/usr/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "/data/packages/python-piff-git/Piff/tests/piff_test_helper.py", line 80, in f2
result = f(*args, **kwargs)
File "/data/packages/python-piff-git/Piff/tests/test_stats.py", line 370, in test_rhostats_config
assert os.path.isfile(rho_file)
AssertionError:
-------------------- >> begin captured stdout << ---------------------
Warning: The script piffify is not in the path.
(' Using explcit path for the test:', '/data/packages/python-piff-git/Piff/scripts/piffify')
Warning: The script plotify is not in the path.
(' Using explcit path for the test:', '/data/packages/python-piff-git/Piff/scripts/plotify')
--------------------- >> end captured stdout << ----------------------
-------------------- >> begin captured logging << --------------------
piff: WARNING: Reading image file output/test_stats_image.fits
piff: WARNING: Reading star catalog output/test_stats_cat.fits.
piff: WARNING: Read a total of 10 stars from 1 image
piff: WARNING: Iteration 1: Fitting 10 stars
piff: WARNING: Total chisq = 0.00 / 23010 dof
piff: WARNING: Iteration 2: Fitting 10 stars
piff: WARNING: Total chisq = 0.00 / 23010 dof
piff: WARNING: Writing PSF to file output/test_rhostats.fits
piff: WARNING: Calculating rho statistics for 10 stars
piff: WARNING: Writing RhoStats plot to file output/test_rhostats.pdf
piff: WARNING: Reading image file output/test_stats_image.fits
piff: WARNING: Reading star catalog output/test_stats_cat.fits.
piff: WARNING: Read a total of 10 stars from 1 image
piff: WARNING: Reading PSF from file output/test_rhostats.fits
piff: WARNING: Calculating rho statistics for 10 stars
piff: WARNING: Writing RhoStats plot to file output/test_rhostats.pdf
piff: WARNING: Reading image file output/test_stats_image.fits
piff: WARNING: Reading star catalog output/test_stats_cat.fits.
piff: WARNING: Read a total of 10 stars from 1 image
--------------------- >> end captured logging << ---------------------
----------------------------------------------------------------------
Ran 75 tests in 163.221s
FAILED (errors=1, failures=1)Offline