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I am trying to run R, but I get the error in the title.
I have read the post with the same title https://bbs.archlinux.org/viewtopic.php?id=226849
But as I understand the solutions there are for "manual installations of R".
I have tried removing R, then clearing pacman's cache then installing gcc6-libs and r.
sudo pacman -R r
sudo pacman -Sc
sudo pacman -S gcc6-libs
sudo pacman -S r
After that, here's the output of some commands.
$ R
/usr/lib64/R/bin/exec/R: error while loading shared libraries: libgfortran.so.3: cannot open shared object file: No such file or directory
$
$ pacman -Fs libgfortran.so.3
community/gcc6-libs 6.4.1-5
usr/lib/gcc/x86_64-pc-linux-gnu/6.4.1/libgfortran.so.3
$
$ pacman -Qi gcc6-libs
Name : gcc6-libs
Version : 6.4.1-5
Description : Runtime libraries shipped by GCC
Architecture : x86_64
URL : http://gcc.gnu.org
Licenses : GPL LGPL FDL custom
Groups : None
Provides : None
Depends On : glibc>=2.25
Optional Deps : None
Required By : None
Optional For : None
Conflicts With : None
Replaces : None
Installed Size : 221.22 MiB
Packager : Bartłomiej Piotrowski <bpiotrowski@archlinux.org>
Build Date : Thu 18 Jan 2018 11:13:30 PM GMT
Install Date : Tue 20 Feb 2018 02:11:11 PM GMT
Install Reason : Explicitly installed
Install Script : No
Validated By : Signature
Last edited by tassio (2018-02-21 08:24:00)
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Check all of your AUR/foreign packages (pacman -Qm). One of them is likely linked to the old libgfortran.
Last edited by Scimmia (2018-02-20 14:35:56)
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Thank you Scimmia, this worked. I ran
$ pacman -Qm
abs 2.4.4-2
apvlv 0.1.5-4
atlas-lapack-base 3.10.3-1
bcg729 1.0.4-1
belle-sip 1.6.3-1
clutter-gst2 2.0.18-1
dwm 6.1-3
fswebcam 20140113-1
geoclue 0.12.99-2
gstreamer0.10 0.10.36-4
gstreamer0.10-base 0.10.36-3
gummiboot 48-1
idesk 0.7.5-7
js17 17.0.0-4
lib32-libtxc_dxtn 1.0.1-5
libqzeitgeist 0.8.0-6
libtxc_dxtn 1.0.1-6
libunique3 3.0.2-3
libzeitgeist 0.3.18-4
mirage 0.9.5.2-4
python2-path 8.2.1-1
python2-webassets 0.11.1-2
screenkey 0.8-1
st 0.7-1
webkitgtk 2.4.11-6
webkitgtk2 2.4.11-6
wordnet 3.1-1
xpacman 0.11-7
and then, for each package that seemed likely to use fortran, I ran
pacman -Qi
and checked the dependencies.
Apparently atlas-lapack-base was the culprit (but it was noy my first try).
In any case, happy this is solved. I learned a lot in the process!
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You might want to check through that list, as well as pacman -Qdt. Many of those packages are old and useless. Gummiboot hasn't existed since 2015 (became systemd-boot).
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Thank you so much! I will look into this (and the other packages as well).
My naive approach to this would be install systemd-boot, then remove gummyboot.
But if I run
pacman -Ss systemd-boot
I don't get any results.
But I'll do my reading about this first
Last edited by tassio (2018-02-21 08:26:55)
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It's part of the systemd package.
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https://wiki.archlinux.org/index.php/Systemd-boot
Reading the wiki is generally more efficient than looking for a specific package name via regular expressions.
Last edited by eschwartz (2018-02-20 16:17:16)
Managing AUR repos The Right Way -- aurpublish (now a standalone tool)
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Thank you both Scimmia and Eschwartz. This is leading to a great cleanup of my setup!
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please install gcc54
#pacman install gcc54
and then set LD_LIBRARY_PATH
#export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/lib/gcc/x86_64-pc-linux-gnu/5.4.1/
so, start you application.
my octave4.2 have this problem too, I solved the problem through the above way
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Not just no, but hell no. 无极, don't comment in old threads with horrible advice.
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Closing.
Last edited by WorMzy (2018-06-09 10:01:41)
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