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#1 2019-03-09 19:40:35

andalenavals
Member
Registered: 2017-10-30
Posts: 39

[SOLVED] dependency not found in clean chroot PKGBUILD

Hello all,
I am checking the following PKGBUILD to see if there possible missing dependencies and debugging.

# Maintainer: Andres Alejandro Navarro Alsina <aanavarroa@unal.edu.co>
# Contributor:  GalSim developers team on GitHub
pkgbase=python-galsim-git
pkgname=('python-galsim-git' 'python2-galsim-git' 'galsim-common-git')
pkgver=v2.1.4.r3.68c8695b0
pkgrel=1
pkgdesc=" The modular galaxy image simulation toolkit "
arch=('any')
url="https://github.com/GalSim-developers/GalSim.git"
license=('BSD')
makedepends=('git' 'scons' 'boost-libs' 'fftw' 'tmv-git' 'eigen' 'pybind11' 'python-coord-git' 'python2-coord-git' 'python-future'  'python2-future' 'python-numpy' 'python2-numpy' 'python-astropy' 'python2-astropy')
checkdepends=('python-nose' 'python2-nose')
source=("${pkgbase}::git+${url}")
md5sums=('SKIP')

pkgver() {
	 cd "${pkgbase}"
	 printf "%s" "$(git describe --long | sed 's/\([^-]*-\)g/r\1/;s/-/./g')"
}

prepare() {
	  cp -a $pkgbase{,-py2}
}


build() {
	cd "$srcdir"/$pkgbase
	scons PREFIX=/usr TMV_DIR=/usr PYBIND11_DIR=/usr/include EIGEN_DIR=/usr/include/eigen3 PYTHON=python

	cd  "$srcdir"/$pkgbase-py2
	scons PREFIX=/usr TMV_DIR=/usr PYBIND11_DIR=/usr/include EIGEN_DIR=/usr/include/eigen3 PYTHON=python2
}

check() {
	cd "$srcdir"/$pkgbase/tests
	nosetests -v || warning 'Tests failed'

	cd "$srcdir"/$pkgbase-py2/tests
	nosetests2 -v || warning 'Tests failed'
}

	
package_python-galsim-git() {
			    depends=('package_galsim-common-git')
			    cd $pkgbase
			    scons PREFIX="${pkgdir}"/usr  FINAL_PREFIX=/usr  PYTHON=python install
			    rm -rf "${pkgdir}"/usr/share
			    rm -f "${pkgdir}"/usr/lib/libgalsim.so
			    rm -f "${pkgdir}"/usr/lib/libgalsim.so.2.1
			    install -Dm644 LICENSE "${pkgdir}"/usr/share/licenses/$pkgname/LICENSE
}

package_python2-galsim-git() {
			     depends=('package_galsim-common-git')
			     cd $pkgbase-py2
			     scons PREFIX=$pkgdir/usr  FINAL_PREFIX=/usr PYTHON=python2 install
			     rm -rf "${pkgdir}"/usr/share		 
			     rm -f "${pkgdir}"/usr/lib/libgalsim.so	 
			     rm -f "${pkgdir}"/usr/lib/libgalsim.so.2.1
			     for i in galsim galsim_download_cosmos; do mv "$pkgdir"/usr/bin/${i}{,2}; done
			     install -Dm644 LICENSE "${pkgdir}"/usr/share/licenses/$pkgname/LICENSE
}

package_galsim-common-git() {
			    depends=()
 			    pkgdesc='common files for python-galsim-git and python2-galsim-git'
    			    cd $pkgbase
			    install -Dm644 LICENSE "${pkgdir}"/usr/share/licenses/$pkgname/LICENSE
    			    mv "${srcdir}"/$pkgbase/share/ "${pkgdir}"/usr/share/galsim/
  			    install -Dm644 "${srcdir}"/$pkgbase/lib/libgalsim.so "${pkgdir}"/usr/lib/libgalsim.so
			    install -Dm644 "${srcdir}"/$pkgbase/lib/libgalsim.so.2.1 "${pkgdir}"/usr/lib/libgalsim.so.2.1
}

It compiles perfectly on my environment

[andres@lapalsina python-galsim]$ makepkg -s
==> Making package: python-galsim-git v2.1.4.r3.68c8695b0-1 (Sat 09 Mar 2019 03:56:05 PM -03)
==> Checking runtime dependencies...
==> Checking buildtime dependencies...
==> Retrieving sources...
  -> Cloning python-galsim-git git repo...
Cloning into bare repository '/data/andres-arch-packages/python-galsim/python-galsim/python-galsim-git'...
remote: Enumerating objects: 407, done.
remote: Counting objects: 100% (407/407), done.
remote: Compressing objects: 100% (300/300), done.
remote: Total 118204 (delta 239), reused 179 (delta 107), pack-reused 117797
Receiving objects: 100% (118204/118204), 128.24 MiB | 10.98 MiB/s, done.
Resolving deltas: 100% (96978/96978), done.
==> Validating source files with md5sums...
    python-galsim-git ... Skipped
==> Extracting sources...
  -> Creating working copy of python-galsim-git git repo...
Cloning into 'python-galsim-git'...
done.
==> Starting prepare()...
==> Starting pkgver()...
==> Starting build()...
scons: Reading SConscript files ...
SCons is version 3.0.4 using python version 2.7.15
Python is from /usr/include/python2.7
Using the following (non-default) scons options:
   PYTHON = python
   PREFIX = /usr
   EIGEN_DIR = /usr/include/eigen3
   PYBIND11_DIR = /usr/include
   TMV_DIR = /usr
These can be edited directly in the file gs_scons.conf.
Type scons -h for a full list of available options.
Using python =  /usr/bin/python
Using PYPREFIX generated from PREFIX =  /usr/lib/python3.7/site-packages
Using compiler: /usr/bin/g++
compiler version: 8.2.1
Determined that a good number of jobs = 8
Using SSE with flag -msse2
Checking for C++ header file fftw3.h... yes
Checking for correct FFTW linkage... yes
Checking for C++ header file Eigen/Core... yes
Checking if we can build against Python... yes
Building for python version 3.7
Checking if we can build module using Eigen... yes
Eigen version is 3.3.7
Checking if we can build against NumPy... yes
Numpy version is 1.16.2
Checking for astropy.io.fits... yes
Astropy version is 3.1.2
Checking for future... yes
Future version is 0.17.1
Checking for coord... yes
Coord version is 1.1
Checking for pybind11... yes
pybind11 version is 2.2.4
Checking if we can build against PyBind11... yes
Checking if C++ exceptions are propagated up to python... yes
GalSim version  2.1.4
scons: done reading SConscript files.
scons: Building targets ...

However, when I use the clean chroot and I pass the requirements to build. It seems that one package python-coord-git were not installed or is not found.

[andres@lapalsina python-galsim]$ makechrootpkg  -c -r $CHROOT -I ../../tmv-git/tmv-git/tmv-git-v0.75.r0.fab5df3-1-x86_64.pkg.tar.xz -I ../../python-coord-git/python-coord-git/python-coord-git-v1.0.4.r15.328e54c-1-any.pkg.tar.xz -I ../../python-coord-git/python-coord-git/python2-coord-git-v1.0.4.r15.328e54c-1-any.pkg.tar.xz -I ../../aurrequirements_chroot/python-astropy/requirements/erfa-1.4.0-1-x86_64.pkg.tar.xz -I ../../aurrequirements_chroot/python-astropy/python-astropy-3.1.2-1-x86_64.pkg.tar.xz -I ../../aurrequirements_chroot/python2-astropy/python2-astropy-2.0.12-1-x86_64.pkg.tar.xz 
[sudo] password for andres: 
Sorry, try again.
[sudo] password for andres: 
==> Synchronizing chroot copy [/home/andres/chroot/root] -> [andres]...done
loading packages...
resolving dependencies...
looking for conflicting packages...

Packages (36) blas-3.8.0-2  cblas-3.8.0-2  cfitsio-3.450-1  hdf5-1.10.4-1  lapack-3.8.0-2
              libaec-1.0.2-1  libnsl-1.2.0-1  python-3.7.2-3  python-appdirs-1.4.3-2
              python-h5py-2.9.0-1  python-jinja-2.10-2  python-markupsafe-1.1.1-1  python-numpy-1.16.2-1
              python-packaging-19.0-1  python-pyparsing-2.3.1-1  python-scipy-1.2.1-1
              python-setuptools-1:40.8.0-1  python-six-1.12.0-1  python2-2.7.15-4
              python2-appdirs-1.4.3-2  python2-h5py-2.9.0-1  python2-jinja-2.10-2
              python2-markupsafe-1.1.1-1  python2-numpy-1.16.2-1  python2-packaging-19.0-1
              python2-pyparsing-2.3.1-1  python2-scipy-1.2.1-1  python2-setuptools-1:40.8.0-1
              python2-six-1.12.0-1  wcslib-6.2-1  erfa-1.4.0-1  python-astropy-3.1.2-1
              python-coord-git-v1.0.4.r15.328e54c-1  python2-astropy-2.0.12-1
              python2-coord-git-v1.0.4.r15.328e54c-1  tmv-git-v0.75.r0.fab5df3-1

Total Installed Size:  520.19 MiB

:: Proceed with installation? [Y/n] 
(36/36) checking keys in keyring                                [##################################] 100%
(35/36) checking package integrity                              [##################################] 100%
(35/36) loading package files                                   [##################################] 100%
(36/36) checking for file conflicts                             [##################################] 100%
(36/36) checking available disk space                           [##################################] 100%
:: Processing package changes...
( 1/36) installing tmv-git                                      [##################################] 100%
( 2/36) installing python-coord-git                             [##################################] 100%
( 3/36) installing python2-coord-git                            [##################################] 100%
( 4/36) installing erfa                                         [##################################] 100%
( 5/36) installing libnsl                                       [##################################] 100%
( 6/36) installing python                                       [##################################] 100%
Optional dependencies for python
    python-setuptools [pending]
    python-pip
    sqlite [installed]
    mpdecimal: for decimal
    xz: for lzma [installed]
    tk: for tkinter
( 7/36) installing blas                                         [##################################] 100%
( 8/36) installing cblas                                        [##################################] 100%
( 9/36) installing lapack                                       [##################################] 100%
(10/36) installing python-numpy                                 [##################################] 100%
Optional dependencies for python-numpy
    python-nose: testsuite
    openblas: faster linear algebra
(11/36) installing python-scipy                                 [##################################] 100%
Optional dependencies for python-scipy
    python-pillow: for image saving module
(12/36) installing libaec                                       [##################################] 100%
(13/36) installing hdf5                                         [##################################] 100%
(14/36) installing python-six                                   [##################################] 100%
(15/36) installing python-h5py                                  [##################################] 100%
(16/36) installing cfitsio                                      [##################################] 100%
(17/36) installing wcslib                                       [##################################] 100%
(18/36) installing python-appdirs                               [##################################] 100%
(19/36) installing python-pyparsing                             [##################################] 100%
(20/36) installing python-packaging                             [##################################] 100%
(21/36) installing python-setuptools                            [##################################] 100%
(22/36) installing python-markupsafe                            [##################################] 100%
(23/36) installing python-jinja                                 [##################################] 100%
(24/36) installing python-astropy                               [##################################] 100%
(25/36) installing python2                                      [##################################] 100%
Optional dependencies for python2
    tk: for IDLE
    python2-setuptools [pending]
    python2-pip
(26/36) installing python2-numpy                                [##################################] 100%
Optional dependencies for python2-numpy
    python2-nose: testsuite
    openblas: faster linear algebra
(27/36) installing python2-scipy                                [##################################] 100%
Optional dependencies for python2-scipy
    python2-pillow: for image saving module
(28/36) installing python2-six                                  [##################################] 100%
(29/36) installing python2-h5py                                 [##################################] 100%
(30/36) installing python2-appdirs                              [##################################] 100%
(31/36) installing python2-pyparsing                            [##################################] 100%
(32/36) installing python2-packaging                            [##################################] 100%
(33/36) installing python2-setuptools                           [##################################] 100%
(34/36) installing python2-markupsafe                           [##################################] 100%
(35/36) installing python2-jinja                                [##################################] 100%
(36/36) installing python2-astropy                              [##################################] 100%
:: Running post-transaction hooks...
(1/1) Arming ConditionNeedsUpdate...
==> Making package: python-galsim-git v2.1.4.r3.68c8695b0-1 (Sat Mar  9 16:36:35 2019)
==> Retrieving sources...
  -> Updating python-galsim-git git repo...
Fetching origin
==> Validating source files with md5sums...
    python-galsim-git ... Skipped
==> Making package: python-galsim-git v2.1.4.r3.68c8695b0-1 (Sat 09 Mar 2019 04:36:38 PM -03)
==> Checking runtime dependencies...
==> Checking buildtime dependencies...
==> Installing missing dependencies...
resolving dependencies...
looking for conflicting packages...

Packages (13) perl-error-0.17027-1  perl-mailtools-2.20-2  perl-timedate-2.30-5  boost-libs-1.69.0-1
              eigen-3.3.7-1  fftw-3.3.8-1  git-2.21.0-1  pybind11-2.2.4-5  python-future-0.17.1-1
              python-nose-1.3.7-4  python2-future-0.17.1-1  python2-nose-1.3.7-4  scons-3.0.4-1

Total Installed Size:  75.62 MiB

:: Proceed with installation? [Y/n] 
(13/13) checking keys in keyring                                [##################################] 100%
(13/13) checking package integrity                              [##################################] 100%
(13/13) loading package files                                   [##################################] 100%
(13/13) checking for file conflicts                             [##################################] 100%
(13/13) checking available disk space                           [##################################] 100%
:: Processing package changes...
( 1/13) installing perl-error                                   [##################################] 100%
( 2/13) installing perl-timedate                                [##################################] 100%
( 3/13) installing perl-mailtools                               [##################################] 100%
( 4/13) installing git                                          [##################################] 100%
Optional dependencies for git
    tk: gitk and git gui
    perl-libwww: git svn
    perl-term-readkey: git svn and interactive.singlekey setting
    perl-mime-tools: git send-email
    perl-net-smtp-ssl: git send-email TLS support
    perl-authen-sasl: git send-email TLS support
    perl-mediawiki-api: git mediawiki support
    perl-datetime-format-iso8601: git mediawiki support
    perl-lwp-protocol-https: git mediawiki https support
    perl-cgi: gitweb (web interface) support
    python2: various helper scripts [installed]
    subversion: git svn
    gnome-keyring: GNOME keyring credential helper
    libsecret: libsecret credential helper [installed]
( 5/13) installing scons                                        [##################################] 100%
( 6/13) installing boost-libs                                   [##################################] 100%
Optional dependencies for boost-libs
    openmpi: for mpi support
( 7/13) installing fftw                                         [##################################] 100%
( 8/13) installing eigen                                        [##################################] 100%
( 9/13) installing pybind11                                     [##################################] 100%
Optional dependencies for pybind11
    python: to target bindings supporting python 3 [installed]
    python2: to target bindings supporting python 2 [installed]
(10/13) installing python-future                                [##################################] 100%
Optional dependencies for python-future
    python-setuptools: futurize and pasteurize scripts [installed]
(11/13) installing python2-future                               [##################################] 100%
Optional dependencies for python2-future
    python2-setuptools: futurize2 and pasteurize2 scripts [installed]
(12/13) installing python-nose                                  [##################################] 100%
(13/13) installing python2-nose                                 [##################################] 100%
:: Running post-transaction hooks...
(1/5) Warn about old perl modules
(2/5) Reloading system manager configuration...
  Skipped: Current root is not booted.
(3/5) Creating system user accounts...
Creating group git with gid 977.
Creating user git (git daemon user) with uid 977 and gid 977.
(4/5) Arming ConditionNeedsUpdate...
(5/5) Updating the info directory file...
==> Retrieving sources...
==> WARNING: Skipping all source file integrity checks.
==> Extracting sources...
  -> Creating working copy of python-galsim-git git repo...
Cloning into 'python-galsim-git'...
done.
==> Starting prepare()...
==> Starting pkgver()...
==> Starting build()...
scons: Reading SConscript files ...
SCons is version 3.0.4 using python version 2.7.15
Python is from /usr/include/python2.7
Using the following (non-default) scons options:
   PYTHON = python
   PREFIX = /usr
   EIGEN_DIR = /usr/include/eigen3
   PYBIND11_DIR = /usr/include
   TMV_DIR = /usr
These can be edited directly in the file gs_scons.conf.
Type scons -h for a full list of available options.
Using python =  /usr/bin/python
Using PYPREFIX generated from PREFIX =  /usr/lib/python3.7/site-packages
Using compiler: /usr/bin/g++
compiler version: 8.2.1
Determined that a good number of jobs = 8
Using SSE with flag -msse2
Checking for C++ header file fftw3.h... yes
Checking for correct FFTW linkage... yes
Checking for C++ header file Eigen/Core... yes
Checking if we can build against Python... yes
Building for python version 3.7
Checking if we can build module using Eigen... yes
Eigen version is 3.3.7
Checking if we can build against NumPy... yes
Numpy version is 1.16.2
Checking for astropy.io.fits... yes
Astropy version is 3.1.2
Checking for future... yes
Future version is 0.17.1
Checking for coord... 
Unable to import coord using the python executable:
/usr/bin/python

Please fix the above error(s) and rerun scons.
Note: you may want to look through the file INSTALL.md for advice.
Also, if you are having trouble, please check the INSTALL FAQ at 
   https://github.com/GalSim-developers/GalSim/wiki/Installation%20FAQ

If nothing there seems helpful, feel free to post an issue here:
   https://github.com/GalSim-developers/GalSim/issues
describing the problem along with the particulars of your system and
configuration.  Include a copy of the above output to the screen, and
post and copy of the file gs_error.txt, which will help people diagnose
the problem.

==> ERROR: A failure occurred in build().
    Aborting...
==> ERROR: Build failed, check /home/andres/chroot/andres/build

What could I be missing?
cheers.

Last edited by andalenavals (2019-03-12 21:24:36)

Offline

#2 2019-03-10 11:49:31

Lone_Wolf
Member
From: Netherlands, Europe
Registered: 2005-10-04
Posts: 11,911

Re: [SOLVED] dependency not found in clean chroot PKGBUILD


python-coord-git is an AUR package, clean chroot building only uses packages from the repos in pacman.conf by default.

You can add the package temporarily, see https://wiki.archlinux.org/index.php/De … d_packages

Last edited by Lone_Wolf (2019-03-10 12:16:44)

Disliking systemd intensely, but not satisfied with alternatives so focusing on taming systemd.


(A works at time B)  && (time C > time B ) ≠  (A works at time C)

Offline

#3 2019-03-10 11:59:20

loqs
Member
Registered: 2014-03-06
Posts: 17,308

Re: [SOLVED] dependency not found in clean chroot PKGBUILD

Lone_Wolf wrote:

python-coord-git is an AUR package, clean chroot building only uses packages from the repos in pacman.conf by default.

Is the command they are using not enough?

makechrootpkg  -c -r $CHROOT -I ../../tmv-git/tmv-git/tmv-git-v0.75.r0.fab5df3-1-x86_64.pkg.tar.xz -I ../../python-coord-git/python-coord-git/python-coord-git-v1.0.4.r15.328e54c-1-any.pkg.tar.xz -I ../../python-coord-git/python-coord-git/python2-coord-git-v1.0.4.r15.328e54c-1-any.pkg.tar.xz -I ../../aurrequirements_chroot/python-astropy/requirements/erfa-1.4.0-1-x86_64.pkg.tar.xz -I ../../aurrequirements_chroot/python-astropy/python-astropy-3.1.2-1-x86_64.pkg.tar.xz -I ../../aurrequirements_chroot/python2-astropy/python2-astropy-2.0.12-1-x86_64.pkg.tar.xz

The output goes on to show

( 2/36) installing python-coord-git                             [##################################] 100%
( 3/36) installing python2-coord-git                            [##################################] 100%

it looks to me something in the scons detection script fails when it tries 'import coord' in a spawned python.

Offline

#4 2019-03-10 12:16:22

Lone_Wolf
Member
From: Netherlands, Europe
Registered: 2005-10-04
Posts: 11,911

Re: [SOLVED] dependency not found in clean chroot PKGBUILD

Oops, missed that OP already used that.

Disliking systemd intensely, but not satisfied with alternatives so focusing on taming systemd.


(A works at time B)  && (time C > time B ) ≠  (A works at time C)

Offline

#5 2019-03-10 15:42:02

graysky
Wiki Maintainer
From: :wq
Registered: 2008-12-01
Posts: 10,597
Website

Re: [SOLVED] dependency not found in clean chroot PKGBUILD

Just skimming through this on my phone, if the issue is that a dep from the AUR is needed, one solution is to keep a local repo INSIDE the chroot from which it will pull deps.  See clean-chroot-manager from the AUR.

CPU-optimized Linux-ck packages @ Repo-ck  • AUR packages • Zsh and other configs

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#6 2019-03-10 15:55:38

ayekat
Member
Registered: 2011-01-17
Posts: 1,589

Re: [SOLVED] dependency not found in clean chroot PKGBUILD

The dependency is (at least as far as pacman is concerned) correctly installed, though. See posts #1 and #3.

pkgs │ hacks │ cfg │ blag

Offline

#7 2019-03-10 17:12:21

loqs
Member
Registered: 2014-03-06
Posts: 17,308

Re: [SOLVED] dependency not found in clean chroot PKGBUILD

File "/usr/lib/python3.7/site-packages/coord/__init__.py", line 24, in <module>
    import os,cffi,glob
ModuleNotFoundError: No module named 'cffi'

not the cause but

python-coord-git /usr/lib/python3.7/site-packages/coord/_coord.cpython-37m-x86_64-linux-gnu.so

why is a package of arch=any including a .so?

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#8 2019-03-10 23:53:06

andalenavals
Member
Registered: 2017-10-30
Posts: 39

Re: [SOLVED] dependency not found in clean chroot PKGBUILD

graysky wrote:

Just skimming through this on my phone, if the issue is that a dep from the AUR is needed, one solution is to keep a local repo INSIDE the chroot from which it will pull deps.  See clean-chroot-manager from the AUR.

The issue is that when I try makechrootpkg providing python-coord-git dependency using -I flag and all the tar balls that the package demands, scons cannot build the package, despite they seem correctly installed by pacman. On the other hand  makepkg build the package without problems, so I suspect that there must be something in mi local installation that I am missing to include in the CHROOT, no idea if it is a package or a particular configuration.
As a early comment said "the scons detection script fails when it tries 'import coord' in a spawned python"

loqs wrote:

why is a package of arch=any including a .so?

Why not? sorry but I do not get what could it be a problem.
By the way just tried 

arch=('i686' 'x86_64')

[andres@lapalsina python-galsim] $ makechrootpkg  -c -r $CHROOT -I ../../tmv-git/tmv-git/tmv-git-v0.75.r0.fab5df3-1-x86_64.pkg.tar.xz -I ../../python-coord-git/python-coord-git/python-coord-git-v1.0.4.r15.328e54c-1-x86_64.pkg.tar.xz -I ../../python-coord-git/python-coord-git/python2-coord-git-v1.0.4.r15.328e54c-1-x86_64.pkg.tar.xz -I ../../aurrequirements_chroot/python-astropy/requirements/erfa-1.4.0-1-x86_64.pkg.tar.xz -I ../../aurrequirements_chroot/python-astropy/python-astropy-3.1.2-1-x86_64.pkg.tar.xz -I ../../aurrequirements_chroot/python2-astropy/python2-astropy-2.0.12-1-x86_64.pkg.tar.xz

and the problem is still there.
Thank you guys, for helping me out.

Last edited by andalenavals (2019-03-10 23:55:04)

Offline

#9 2019-03-11 00:39:41

loqs
Member
Registered: 2014-03-06
Posts: 17,308

Re: [SOLVED] dependency not found in clean chroot PKGBUILD

file usr/lib/python3.7/site-packages/coord/_coord.cpython-37m-x86_64-linux-gnu.so
usr/lib/python3.7/site-packages/coord/_coord.cpython-37m-x86_64-linux-gnu.so: ELF 64-bit LSB shared object, x86-64, version 1 (SYSV), dynamically linked, BuildID[sha1]=090645dd5114a5fd829c08de9534ad013c742850, stripped

Edit:
I was not clear enough when I wrote

loqs wrote:
File "/usr/lib/python3.7/site-packages/coord/__init__.py", line 24, in <module>
    import os,cffi,glob
ModuleNotFoundError: No module named 'cffi'

not the cause but

python-coord-git /usr/lib/python3.7/site-packages/coord/_coord.cpython-37m-x86_64-linux-gnu.so

why is a package of arch=any including a .so?

The cause was 'ModuleNotFoundError: No module named 'cffi'
"not the cause but" was referring to the .so inclusion

Add python-cffi as a depends of python-coord-git and python2-cffi as a depends of python2-coord-git

extra-x86_64-build -- -I ../python-astropy/python-astropy-3.1.2-1-x86_64.pkg.tar.xz -I ../python2-astropy/python2-astropy-2.0.12-1-x86_64.pkg.tar.xz -I ../erfa/erfa-1.4.0-1-x86_64.pkg.tar.xz -I ../python-coord-git/python-coord-git-v1.0.4.r15.328e54c-1-x86_64.pkg.tar.xz -I ../python-coord-git/python2-coord-git-v1.0.4.r15.328e54c-1-x86_64.pkg.tar.xz -I ../tmv-git/tmv-git-v0.75.r0.fab5df3-1-x86_64.pkg.tar.xz
:: Synchronizing package databases...
 core is up to date
 extra is up to date
 community is up to date
:: Starting full system upgrade...
 there is nothing to do
==> Building in chroot for [extra] (x86_64)...
==> Synchronizing chroot copy [/var/lib/archbuild/extra-x86_64/root] -> [testuser]...done
loading packages...
resolving dependencies...
looking for conflicting packages...

Packages (42) blas-3.8.0-2  cblas-3.8.0-2  cfitsio-3.450-1  hdf5-1.10.4-1
              lapack-3.8.0-2  libaec-1.0.2-1  libnsl-1.2.0-1  python-3.7.2-3
              python-appdirs-1.4.3-2  python-cffi-1.12.2-1  python-h5py-2.9.0-1
              python-jinja-2.10-2  python-markupsafe-1.1.1-1
              python-numpy-1.16.2-1  python-packaging-19.0-1  python-ply-3.11-2
              python-pycparser-2.19-1  python-pyparsing-2.3.1-1
              python-scipy-1.2.1-1  python-setuptools-1:40.8.0-1
              python-six-1.12.0-1  python2-2.7.15-4  python2-appdirs-1.4.3-2
              python2-cffi-1.12.2-1  python2-h5py-2.9.0-1  python2-jinja-2.10-2
              python2-markupsafe-1.1.1-1  python2-numpy-1.16.2-1
              python2-packaging-19.0-1  python2-ply-3.11-2
              python2-pycparser-2.19-1  python2-pyparsing-2.3.1-1
              python2-scipy-1.2.1-1  python2-setuptools-1:40.8.0-1
              python2-six-1.12.0-1  wcslib-6.2-1  erfa-1.4.0-1
              python-astropy-3.1.2-1  python-coord-git-v1.0.4.r15.328e54c-1
              python2-astropy-2.0.12-1  python2-coord-git-v1.0.4.r15.328e54c-1
              tmv-git-v0.75.r0.fab5df3-1

Total Installed Size:  525.57 MiB

:: Proceed with installation? [Y/n] 
(42/42) checking keys in keyring                   [######################] 100%
(40/42) checking package integrity                 [######################] 100%
(40/42) loading package files                      [######################] 100%
(42/42) checking for file conflicts                [######################] 100%
:: Processing package changes...
( 1/42) installing libnsl                          [######################] 100%
( 2/42) installing python                          [######################] 100%
Optional dependencies for python
    python-setuptools [pending]
    python-pip
    sqlite [installed]
    mpdecimal: for decimal
    xz: for lzma [installed]
    tk: for tkinter
( 3/42) installing blas                            [######################] 100%
( 4/42) installing cblas                           [######################] 100%
( 5/42) installing lapack                          [######################] 100%
( 6/42) installing python-numpy                    [######################] 100%
Optional dependencies for python-numpy
    python-nose: testsuite
    openblas: faster linear algebra
( 7/42) installing python-scipy                    [######################] 100%
Optional dependencies for python-scipy
    python-pillow: for image saving module
( 8/42) installing libaec                          [######################] 100%
( 9/42) installing hdf5                            [######################] 100%
(10/42) installing python-six                      [######################] 100%
(11/42) installing python-h5py                     [######################] 100%
(12/42) installing cfitsio                         [######################] 100%
(13/42) installing wcslib                          [######################] 100%
(14/42) installing erfa                            [######################] 100%
(15/42) installing python-appdirs                  [######################] 100%
(16/42) installing python-pyparsing                [######################] 100%
(17/42) installing python-packaging                [######################] 100%
(18/42) installing python-setuptools               [######################] 100%
(19/42) installing python-markupsafe               [######################] 100%
(20/42) installing python-jinja                    [######################] 100%
(21/42) installing python-astropy                  [######################] 100%
(22/42) installing python2                         [######################] 100%
Optional dependencies for python2
    tk: for IDLE
    python2-setuptools [pending]
    python2-pip
(23/42) installing python2-numpy                   [######################] 100%
Optional dependencies for python2-numpy
    python2-nose: testsuite
    openblas: faster linear algebra
(24/42) installing python2-scipy                   [######################] 100%
Optional dependencies for python2-scipy
    python2-pillow: for image saving module
(25/42) installing python2-six                     [######################] 100%
(26/42) installing python2-h5py                    [######################] 100%
(27/42) installing python2-appdirs                 [######################] 100%
(28/42) installing python2-pyparsing               [######################] 100%
(29/42) installing python2-packaging               [######################] 100%
(30/42) installing python2-setuptools              [######################] 100%
(31/42) installing python2-markupsafe              [######################] 100%
(32/42) installing python2-jinja                   [######################] 100%
(33/42) installing python2-astropy                 [######################] 100%
(34/42) installing python-ply                      [######################] 100%
(35/42) installing python-pycparser                [######################] 100%
(36/42) installing python-cffi                     [######################] 100%
(37/42) installing python-coord-git                [######################] 100%
(38/42) installing python2-ply                     [######################] 100%
(39/42) installing python2-pycparser               [######################] 100%
(40/42) installing python2-cffi                    [######################] 100%
(41/42) installing python2-coord-git               [######################] 100%
(42/42) installing tmv-git                         [######################] 100%
:: Running post-transaction hooks...
(1/1) Arming ConditionNeedsUpdate...
==> Making package: python-galsim-git v2.1.4.r3.68c8695b0-1 (Mon Mar 11 00:52:20 2019)
==> Retrieving sources...
  -> Updating python-galsim-git git repo...
Fetching origin
==> Validating source files with md5sums...
    python-galsim-git ... Skipped
==> Making package: python-galsim-git v2.1.4.r3.68c8695b0-1 (Mon 11 Mar 2019 12:52:22 AM UTC)
==> Checking runtime dependencies...
==> Checking buildtime dependencies...
==> Installing missing dependencies...
resolving dependencies...
looking for conflicting packages...

Packages (13) perl-error-0.17027-1  perl-mailtools-2.20-2  perl-timedate-2.30-5  boost-libs-1.69.0-1  eigen-3.3.7-1  fftw-3.3.8-1  git-2.21.0-1  pybind11-2.2.4-5  python-future-0.17.1-1
              python-nose-1.3.7-4  python2-future-0.17.1-1  python2-nose-1.3.7-4  scons-3.0.4-1

Total Installed Size:  75.62 MiB

:: Proceed with installation? [Y/n] 
(13/13) checking keys in keyring                                                                                   [####################################################################] 100%
(13/13) checking package integrity                                                                                 [####################################################################] 100%
(13/13) loading package files                                                                                      [####################################################################] 100%
(13/13) checking for file conflicts                                                                                [####################################################################] 100%
:: Processing package changes...
( 1/13) installing perl-error                                                                                      [####################################################################] 100%
( 2/13) installing perl-timedate                                                                                   [####################################################################] 100%
( 3/13) installing perl-mailtools                                                                                  [####################################################################] 100%
( 4/13) installing git                                                                                             [####################################################################] 100%
Optional dependencies for git
    tk: gitk and git gui
    perl-libwww: git svn
    perl-term-readkey: git svn and interactive.singlekey setting
    perl-mime-tools: git send-email
    perl-net-smtp-ssl: git send-email TLS support
    perl-authen-sasl: git send-email TLS support
    perl-mediawiki-api: git mediawiki support
    perl-datetime-format-iso8601: git mediawiki support
    perl-lwp-protocol-https: git mediawiki https support
    perl-cgi: gitweb (web interface) support
    python2: various helper scripts [installed]
    subversion: git svn
    gnome-keyring: GNOME keyring credential helper
    libsecret: libsecret credential helper [installed]
( 5/13) installing scons                                                                                           [####################################################################] 100%
( 6/13) installing boost-libs                                                                                      [####################################################################] 100%
Optional dependencies for boost-libs
    openmpi: for mpi support
( 7/13) installing fftw                                                                                            [####################################################################] 100%
( 8/13) installing eigen                                                                                           [####################################################################] 100%
( 9/13) installing pybind11                                                                                        [####################################################################] 100%
Optional dependencies for pybind11
    python: to target bindings supporting python 3 [installed]
    python2: to target bindings supporting python 2 [installed]
(10/13) installing python-future                                                                                   [####################################################################] 100%
Optional dependencies for python-future
    python-setuptools: futurize and pasteurize scripts [installed]
(11/13) installing python2-future                                                                                  [####################################################################] 100%
Optional dependencies for python2-future
    python2-setuptools: futurize2 and pasteurize2 scripts [installed]
(12/13) installing python-nose                                                                                     [####################################################################] 100%
(13/13) installing python2-nose                                                                                    [####################################################################] 100%
:: Running post-transaction hooks...
(1/5) Warn about old perl modules
(2/5) Reloading system manager configuration...
  Skipped: Current root is not booted.
(3/5) Creating system user accounts...
Creating group git with gid 977.
Creating user git (git daemon user) with uid 977 and gid 977.
(4/5) Arming ConditionNeedsUpdate...
(5/5) Updating the info directory file...
==> Retrieving sources...
==> WARNING: Skipping all source file integrity checks.
==> Extracting sources...
  -> Creating working copy of python-galsim-git git repo...
Cloning into 'python-galsim-git'...
done.
==> Starting prepare()...
==> Starting pkgver()...
==> Starting build()...
scons: Reading SConscript files ...
SCons is version 3.0.4 using python version 2.7.15
Python is from /usr/include/python2.7
Using the following (non-default) scons options:
   PYTHON = python
   PREFIX = /usr
   EIGEN_DIR = /usr/include/eigen3
   PYBIND11_DIR = /usr/include
   TMV_DIR = /usr
These can be edited directly in the file gs_scons.conf.
Type scons -h for a full list of available options.
Using python =  /usr/bin/python
Using PYPREFIX generated from PREFIX =  /usr/lib/python3.7/site-packages
Using compiler: /usr/bin/g++
compiler version: 8.2.1
Determined that a good number of jobs = 8
Using SSE with flag -msse2
Checking for C++ header file fftw3.h... yes
Checking for correct FFTW linkage... yes
Checking for C++ header file Eigen/Core... yes
Checking if we can build against Python... yes
Building for python version 3.7
Checking if we can build module using Eigen... yes
Eigen version is 3.3.7
Checking if we can build against NumPy... yes
Numpy version is 1.16.2
Checking for astropy.io.fits... yes
Astropy version is 3.1.2
Checking for future... yes
Future version is 0.17.1
Checking for coord... yes
Coord version is 1.1
Checking for pybind11... yes
pybind11 version is 2.2.4
Checking if we can build against PyBind11... yes
Checking if C++ exceptions are propagated up to python... yes
GalSim version  2.1.4
scons: done reading SConscript files.
scons: Building targets ...

Last edited by loqs (2019-03-11 01:02:20)

Offline

#10 2019-03-11 01:34:51

andalenavals
Member
Registered: 2017-10-30
Posts: 39

Re: [SOLVED] dependency not found in clean chroot PKGBUILD

loqs wrote:
file usr/lib/python3.7/site-packages/coord/_coord.cpython-37m-x86_64-linux-gnu.so
usr/lib/python3.7/site-packages/coord/_coord.cpython-37m-x86_64-linux-gnu.so: ELF 64-bit LSB shared object, x86-64, version 1 (SYSV), dynamically linked, BuildID[sha1]=090645dd5114a5fd829c08de9534ad013c742850, stripped

Edit:
I was not clear enough when I wrote

loqs wrote:
File "/usr/lib/python3.7/site-packages/coord/__init__.py", line 24, in <module>
    import os,cffi,glob
ModuleNotFoundError: No module named 'cffi'

not the cause but

python-coord-git /usr/lib/python3.7/site-packages/coord/_coord.cpython-37m-x86_64-linux-gnu.so

why is a package of arch=any including a .so?

The cause was 'ModuleNotFoundError: No module named 'cffi'
"not the cause but" was referring to the .so inclusion

Add python-cffi as a depends of python-coord-git and python2-cffi as a depends of python2-coord-git

extra-x86_64-build -- -I ../python-astropy/python-astropy-3.1.2-1-x86_64.pkg.tar.xz -I ../python2-astropy/python2-astropy-2.0.12-1-x86_64.pkg.tar.xz -I ../erfa/erfa-1.4.0-1-x86_64.pkg.tar.xz -I ../python-coord-git/python-coord-git-v1.0.4.r15.328e54c-1-x86_64.pkg.tar.xz -I ../python-coord-git/python2-coord-git-v1.0.4.r15.328e54c-1-x86_64.pkg.tar.xz -I ../tmv-git/tmv-git-v0.75.r0.fab5df3-1-x86_64.pkg.tar.xz
:: Synchronizing package databases...
 core is up to date
 extra is up to date
 community is up to date
:: Starting full system upgrade...
 there is nothing to do
==> Building in chroot for [extra] (x86_64)...
==> Synchronizing chroot copy [/var/lib/archbuild/extra-x86_64/root] -> [testuser]...done
loading packages...
resolving dependencies...
looking for conflicting packages...

Packages (42) blas-3.8.0-2  cblas-3.8.0-2  cfitsio-3.450-1  hdf5-1.10.4-1
              lapack-3.8.0-2  libaec-1.0.2-1  libnsl-1.2.0-1  python-3.7.2-3
              python-appdirs-1.4.3-2  python-cffi-1.12.2-1  python-h5py-2.9.0-1
              python-jinja-2.10-2  python-markupsafe-1.1.1-1
              python-numpy-1.16.2-1  python-packaging-19.0-1  python-ply-3.11-2
              python-pycparser-2.19-1  python-pyparsing-2.3.1-1
              python-scipy-1.2.1-1  python-setuptools-1:40.8.0-1
              python-six-1.12.0-1  python2-2.7.15-4  python2-appdirs-1.4.3-2
              python2-cffi-1.12.2-1  python2-h5py-2.9.0-1  python2-jinja-2.10-2
              python2-markupsafe-1.1.1-1  python2-numpy-1.16.2-1
              python2-packaging-19.0-1  python2-ply-3.11-2
              python2-pycparser-2.19-1  python2-pyparsing-2.3.1-1
              python2-scipy-1.2.1-1  python2-setuptools-1:40.8.0-1
              python2-six-1.12.0-1  wcslib-6.2-1  erfa-1.4.0-1
              python-astropy-3.1.2-1  python-coord-git-v1.0.4.r15.328e54c-1
              python2-astropy-2.0.12-1  python2-coord-git-v1.0.4.r15.328e54c-1
              tmv-git-v0.75.r0.fab5df3-1

Total Installed Size:  525.57 MiB

:: Proceed with installation? [Y/n] 
(42/42) checking keys in keyring                   [######################] 100%
(40/42) checking package integrity                 [######################] 100%
(40/42) loading package files                      [######################] 100%
(42/42) checking for file conflicts                [######################] 100%
:: Processing package changes...
( 1/42) installing libnsl                          [######################] 100%
( 2/42) installing python                          [######################] 100%
Optional dependencies for python
    python-setuptools [pending]
    python-pip
    sqlite [installed]
    mpdecimal: for decimal
    xz: for lzma [installed]
    tk: for tkinter
( 3/42) installing blas                            [######################] 100%
( 4/42) installing cblas                           [######################] 100%
( 5/42) installing lapack                          [######################] 100%
( 6/42) installing python-numpy                    [######################] 100%
Optional dependencies for python-numpy
    python-nose: testsuite
    openblas: faster linear algebra
( 7/42) installing python-scipy                    [######################] 100%
Optional dependencies for python-scipy
    python-pillow: for image saving module
( 8/42) installing libaec                          [######################] 100%
( 9/42) installing hdf5                            [######################] 100%
(10/42) installing python-six                      [######################] 100%
(11/42) installing python-h5py                     [######################] 100%
(12/42) installing cfitsio                         [######################] 100%
(13/42) installing wcslib                          [######################] 100%
(14/42) installing erfa                            [######################] 100%
(15/42) installing python-appdirs                  [######################] 100%
(16/42) installing python-pyparsing                [######################] 100%
(17/42) installing python-packaging                [######################] 100%
(18/42) installing python-setuptools               [######################] 100%
(19/42) installing python-markupsafe               [######################] 100%
(20/42) installing python-jinja                    [######################] 100%
(21/42) installing python-astropy                  [######################] 100%
(22/42) installing python2                         [######################] 100%
Optional dependencies for python2
    tk: for IDLE
    python2-setuptools [pending]
    python2-pip
(23/42) installing python2-numpy                   [######################] 100%
Optional dependencies for python2-numpy
    python2-nose: testsuite
    openblas: faster linear algebra
(24/42) installing python2-scipy                   [######################] 100%
Optional dependencies for python2-scipy
    python2-pillow: for image saving module
(25/42) installing python2-six                     [######################] 100%
(26/42) installing python2-h5py                    [######################] 100%
(27/42) installing python2-appdirs                 [######################] 100%
(28/42) installing python2-pyparsing               [######################] 100%
(29/42) installing python2-packaging               [######################] 100%
(30/42) installing python2-setuptools              [######################] 100%
(31/42) installing python2-markupsafe              [######################] 100%
(32/42) installing python2-jinja                   [######################] 100%
(33/42) installing python2-astropy                 [######################] 100%
(34/42) installing python-ply                      [######################] 100%
(35/42) installing python-pycparser                [######################] 100%
(36/42) installing python-cffi                     [######################] 100%
(37/42) installing python-coord-git                [######################] 100%
(38/42) installing python2-ply                     [######################] 100%
(39/42) installing python2-pycparser               [######################] 100%
(40/42) installing python2-cffi                    [######################] 100%
(41/42) installing python2-coord-git               [######################] 100%
(42/42) installing tmv-git                         [######################] 100%
:: Running post-transaction hooks...
(1/1) Arming ConditionNeedsUpdate...
==> Making package: python-galsim-git v2.1.4.r3.68c8695b0-1 (Mon Mar 11 00:52:20 2019)
==> Retrieving sources...
  -> Updating python-galsim-git git repo...
Fetching origin
==> Validating source files with md5sums...
    python-galsim-git ... Skipped
==> Making package: python-galsim-git v2.1.4.r3.68c8695b0-1 (Mon 11 Mar 2019 12:52:22 AM UTC)
==> Checking runtime dependencies...
==> Checking buildtime dependencies...
==> Installing missing dependencies...
resolving dependencies...
looking for conflicting packages...

Packages (13) perl-error-0.17027-1  perl-mailtools-2.20-2  perl-timedate-2.30-5  boost-libs-1.69.0-1  eigen-3.3.7-1  fftw-3.3.8-1  git-2.21.0-1  pybind11-2.2.4-5  python-future-0.17.1-1
              python-nose-1.3.7-4  python2-future-0.17.1-1  python2-nose-1.3.7-4  scons-3.0.4-1

Total Installed Size:  75.62 MiB

:: Proceed with installation? [Y/n] 
(13/13) checking keys in keyring                                                                                   [####################################################################] 100%
(13/13) checking package integrity                                                                                 [####################################################################] 100%
(13/13) loading package files                                                                                      [####################################################################] 100%
(13/13) checking for file conflicts                                                                                [####################################################################] 100%
:: Processing package changes...
( 1/13) installing perl-error                                                                                      [####################################################################] 100%
( 2/13) installing perl-timedate                                                                                   [####################################################################] 100%
( 3/13) installing perl-mailtools                                                                                  [####################################################################] 100%
( 4/13) installing git                                                                                             [####################################################################] 100%
Optional dependencies for git
    tk: gitk and git gui
    perl-libwww: git svn
    perl-term-readkey: git svn and interactive.singlekey setting
    perl-mime-tools: git send-email
    perl-net-smtp-ssl: git send-email TLS support
    perl-authen-sasl: git send-email TLS support
    perl-mediawiki-api: git mediawiki support
    perl-datetime-format-iso8601: git mediawiki support
    perl-lwp-protocol-https: git mediawiki https support
    perl-cgi: gitweb (web interface) support
    python2: various helper scripts [installed]
    subversion: git svn
    gnome-keyring: GNOME keyring credential helper
    libsecret: libsecret credential helper [installed]
( 5/13) installing scons                                                                                           [####################################################################] 100%
( 6/13) installing boost-libs                                                                                      [####################################################################] 100%
Optional dependencies for boost-libs
    openmpi: for mpi support
( 7/13) installing fftw                                                                                            [####################################################################] 100%
( 8/13) installing eigen                                                                                           [####################################################################] 100%
( 9/13) installing pybind11                                                                                        [####################################################################] 100%
Optional dependencies for pybind11
    python: to target bindings supporting python 3 [installed]
    python2: to target bindings supporting python 2 [installed]
(10/13) installing python-future                                                                                   [####################################################################] 100%
Optional dependencies for python-future
    python-setuptools: futurize and pasteurize scripts [installed]
(11/13) installing python2-future                                                                                  [####################################################################] 100%
Optional dependencies for python2-future
    python2-setuptools: futurize2 and pasteurize2 scripts [installed]
(12/13) installing python-nose                                                                                     [####################################################################] 100%
(13/13) installing python2-nose                                                                                    [####################################################################] 100%
:: Running post-transaction hooks...
(1/5) Warn about old perl modules
(2/5) Reloading system manager configuration...
  Skipped: Current root is not booted.
(3/5) Creating system user accounts...
Creating group git with gid 977.
Creating user git (git daemon user) with uid 977 and gid 977.
(4/5) Arming ConditionNeedsUpdate...
(5/5) Updating the info directory file...
==> Retrieving sources...
==> WARNING: Skipping all source file integrity checks.
==> Extracting sources...
  -> Creating working copy of python-galsim-git git repo...
Cloning into 'python-galsim-git'...
done.
==> Starting prepare()...
==> Starting pkgver()...
==> Starting build()...
scons: Reading SConscript files ...
SCons is version 3.0.4 using python version 2.7.15
Python is from /usr/include/python2.7
Using the following (non-default) scons options:
   PYTHON = python
   PREFIX = /usr
   EIGEN_DIR = /usr/include/eigen3
   PYBIND11_DIR = /usr/include
   TMV_DIR = /usr
These can be edited directly in the file gs_scons.conf.
Type scons -h for a full list of available options.
Using python =  /usr/bin/python
Using PYPREFIX generated from PREFIX =  /usr/lib/python3.7/site-packages
Using compiler: /usr/bin/g++
compiler version: 8.2.1
Determined that a good number of jobs = 8
Using SSE with flag -msse2
Checking for C++ header file fftw3.h... yes
Checking for correct FFTW linkage... yes
Checking for C++ header file Eigen/Core... yes
Checking if we can build against Python... yes
Building for python version 3.7
Checking if we can build module using Eigen... yes
Eigen version is 3.3.7
Checking if we can build against NumPy... yes
Numpy version is 1.16.2
Checking for astropy.io.fits... yes
Astropy version is 3.1.2
Checking for future... yes
Future version is 0.17.1
Checking for coord... yes
Coord version is 1.1
Checking for pybind11... yes
pybind11 version is 2.2.4
Checking if we can build against PyBind11... yes
Checking if C++ exceptions are propagated up to python... yes
GalSim version  2.1.4
scons: done reading SConscript files.
scons: Building targets ...

Could you tell me a litle more about how do you come up with this solution?
Because I tested the PKGBUILD of python-coord-git in a clean chroot, and no problems were reported at least for the check() tests. So now I wondering if I should put python-future, python-numpy and python-setuptools in the dependences rather than makedepends.

# This is an example PKGBUILD file. Use this as a start to creating your own,
# and remove these comments. For more information, see 'man PKGBUILD'.
# NOTE: Please fill out the license field for your package! If it is unknown,
# then please put 'unknown'.

# Maintainer: Andres Alejandro Navarro Alsina <aanavarroa@unal.edu.co>
# Contributor: M. Jarvis 
pkgbase=python-coord-git
pkgname=('python-coord-git' 'python2-coord-git')
pkgver=v1.0.4.r15.328e54c
pkgrel=1
pkgdesc=" Coord is a Python module that provides basic functionality related to angles and celestial coordinatesw"
arch=('i686' 'x86_64')
url="https://github.com/LSSTDESC/Coord.git"
license=('BSD')
makedepends=('git' 'python' 'python-cffi' 'python-numpy' 'python-future' 'python2' 'python2-cffi' 'python2-numpy' 'python2-future' 'python-setuptools' 'python2-setuptools')
checkdepends=('python-nose' 'python2-nose' 'python-astropy' 'python2-astropy')
source=("${pkgbase}::git+${url}")
md5sums=('SKIP')

pkgver() {
  	 cd "${pkgbase}"
 	 printf "%s" "$(git describe --long --tags | sed 's/\([^-]*-\)g/r\1/;s/-/./g')"
}

prepare() {
	  cp -a $pkgbase{,-py2}
}

build() {
	cd "$srcdir"/$pkgbase
	python setup.py build

	cd  "$srcdir"/$pkgbase-py2
	python2 setup.py build
}

check() {
	cd "$srcdir"/$pkgbase
	nosetests -v || warning 'Tests failed'

	cd "$srcdir"/$pkgbase-py2
	nosetests2 -v || warning 'Tests2 failed'
}

package_python-coord-git() {
	  		  depends=('glibc')
	  		  cd $pkgbase
	  		  python setup.py install --root=${pkgdir} --prefix=/usr --optimize=1
			  install -Dm644 LICENSE "${pkgdir}"/usr/share/licenses/$pkgname/LICENSE
}

package_python2-coord-git() {
	  		  depends=('glibc')
	  		  cd $pkgbase-py2
			  python2 setup.py install --root=${pkgdir} --prefix=/usr --optimize=1
			  install -Dm644 LICENSE "${pkgdir}"/usr/share/licenses/$pkgname/LICENSE
}

EDIT:
Thank you very much @loqs that was the solution!
I just build the tarball, and it is working just right.
Other wierd thing is that namcap, shows python-cffi as an not needed dependency
or might I am not running it properly.

[andres@lapalsina python-coord-git]$ namcap PKGBUILD python-coord-git-v1.0.4.r15.328e54c-1-x86_64.pkg.tar.xz 
python-coord-git W: Unused shared library '/usr/lib/libpthread.so.0' by file ('usr/lib/python3.7/site-packages/coord/_coord.cpython-37m-x86_64-linux-gnu.so')
python-coord-git W: Dependency glibc included but already satisfied
python-coord-git W: Dependency included and not needed ('python-cffi')

Last edited by andalenavals (2019-03-11 01:50:28)

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#11 2019-03-11 01:44:57

loqs
Member
Registered: 2014-03-06
Posts: 17,308

Re: [SOLVED] dependency not found in clean chroot PKGBUILD

I looked at https://github.com/GalSim-developers/Ga … ruct#L1801 which showed the test was 'import coord'
I added python -c 'import coord' to the start of build()

build() {
	cd "$srcdir"/$pkgbase
	python -c 'import coord'
	scons PREFIX=/usr TMV_DIR=/usr PYBIND11_DIR=/usr/include EIGEN_DIR=/usr/include/eigen3 PYTHON=python

	cd  "$srcdir"/$pkgbase-py2
	scons PREFIX=/usr TMV_DIR=/usr PYBIND11_DIR=/usr/include EIGEN_DIR=/usr/include/eigen3 PYTHON=python2
}

That produced the error referencing cffi.

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#12 2019-03-11 01:53:20

andalenavals
Member
Registered: 2017-10-30
Posts: 39

Re: [SOLVED] dependency not found in clean chroot PKGBUILD

loqs wrote:

I looked at https://github.com/GalSim-developers/Ga … ruct#L1801 which showed the test was 'import coord'
I added python -c 'import coord' to the start of build()

build() {
	cd "$srcdir"/$pkgbase
	python -c 'import coord'
	scons PREFIX=/usr TMV_DIR=/usr PYBIND11_DIR=/usr/include EIGEN_DIR=/usr/include/eigen3 PYTHON=python

	cd  "$srcdir"/$pkgbase-py2
	scons PREFIX=/usr TMV_DIR=/usr PYBIND11_DIR=/usr/include EIGEN_DIR=/usr/include/eigen3 PYTHON=python2
}

That produced the error referencing cffi.

Really smart! cool

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