Arch Linux

notmilad

Member

Registered: 2020-05-31

Posts: 11

pacman update broke ld.so and bootloader

Yesterday I was doing a regular update of my packages when pacman gave the errors below (this is an ocr from a screenshot after I booted off a live USB and looked at the logs so apologies for some inaccuracies)

[ [2823-18-27T18:13:42+0100] [ALPM] upgraded xorg-server (21.1.8-2 -> 21.1.9-1)
2823-18-27T18:13:42+0188] [ALPM] upgraded xorg-server-common (21.1.8-2 -> 21.1.9-1)
[2023-10-27T18:13:42+0100] [ALPM] upgraded xterm (387-1 -> 388-1)
[2823-18-27T18:13:42+8188] [ALPM] transaction completed
[2023-18-27T18:13:43+0108] [ALPM] running '28-systemd-sysusers.hook'... [2823-18-27T18:13:43+0188] [ALPM-SCRIPTLET] Inconsistency detected by ld.so: ../sysdeps/x86_64/d1-machine.h: 487: elf_machine_rela_relative: Assertion `ELFW(R_T
YPE) (reloc->r_info) == R_X86_64_RELATIVE' failed! [2823-18-27T18:13:43+0188] [ALPM] running '38-systemd-daemon-reload.hook'...
[2823-18-27T18:13:43+01881 CALPM-SCRIPTLET] Inconsistency detected by Id.so: ../sysdeps/x86_64/dl-machine.h: 487: elf_machine_rela_relative: Assertion `ELFW(R_T
YPE) (reloc->r_info) == R_X86_64_RELATIVE' failed!
[2823-18-27T18:13:43+8188] [ALPM-SCRIPTLET] Inconsistency detected by ld.so: ../sysdeps/x86_64/d1-machine.h: 487: elf_machine_rela_relative: Assertion `ELFW(R_T
YPE) (reloc->r_info) == R_X86_64_RELATIVE' failed! 2823-18-27T18:13:43+8188] [ALPM] running '38-systemd-tmpfiles.hook'...
[ [2823-18-27T18:13:43+81881 CALPM-SCRIPTLET) Inconsistency detected by ld.so: ../sysdeps/x86_64/d1-machine.h: 487: elf_machine_rela_relative: Assertion `ELFW(R_T YPE
) (reloc->r_info) == R_X86_64_RELATIVE' failed! [2823-18-27T18:13:43+8188] [ALPM] running '30-systemd-udev-reload.hook'... 2823-18-27T18:13:43+81881 CALPM-SCRIPTLET] Inconsistency detected by ld.so: ../sysdeps/x86_64/dl-machine.h: 487: elf_machine_rela_relative: Assertion `ELFW(R_T
[
YPE) (reloc->r_info) == R_X86_64_RELATIVE' failed! [2823-18-27T18:13:43+0100] [ALPM-SCRIPTLET] Inconsistency detected by ld.so: ../sysdeps/x86_64/d1-machine.h: 487: elf_machine_rela_relative: Assertion `ELFW(R_T
YPE) ( reloc->r_info) == R_X86_64_RELATIVE' failed!
[
2823-18-27T18:13:43+0100] [ALPM] running 38-systemd-update.hook'... 2823-18-27T18:13:43+8188] [ALPM] running '68-depmod.hook'...
[
[2823-18-27T18:13:43+8188] [ALPM-SCRIPTLET] Inconsistency detected by ld.so: ../sysdeps/x86_64/dl-machine.h: 487: elf_machine_rela_relative: Assertion `ELFW(R_T
YPE) (reloc->r_info) == R_X86_64_RELATIVE' failed!
[2823-18-27T18:13:43+8188] [ALPM-SCRIPTLET] Inconsistency detected by ld.so: ../sysdeps/x86_64/d1-machine.h: 487: elf_machine_rela_relative: Assertion `ELFW(R_T
YPE) ( reloc->r_info) == R_X86_64_RELATIVE' failed!
[
2823-18-27T18:13:43+8188] [ALPM] running '78-dkms-install.hook'...
[
2823-18-27T18:13:43+8188] [ALPM-SCRIPTLET] ==> dkms install --no-depmod v4121oopback/8.12.7 -k 6.1.60-1-lts
[
2823-18-27T18:13:43+0188] [ALPM-SCRIPTLET] Inconsistency detected by Id.so: ../sysdeps/x86_64/d1-machine.h: 487: elf_machine_rela_relative: Assertion `ELFW(R_T
YPE) (reloc->r_info) == R_X86_64_RELATIVE' failed!
[2023-10-27T18:13:44+0108] [ALPM-SCRIPTLET] Inconsistency detected by ld.so: ../sysdeps/x86_64/d1-machine.h: 487: elf_machine_rela_relative: Assertion `ELFW(R_T YPE) (reloc->r_info) == R_X86_64_RELATIVE' failed!
[2823-18-27T18:13:44+8188] [ALPM-SCRIPTLET] Inconsistency detected by ld.so: ../sysdeps/x86_64/d1-machine.h: 487: elf_machine_rela_relative: Assertion `ELFW(R_T ) (reloc->r_info) == R_X86_64_RELATIVE' failed!
YPE [2823-18-27T18:13:46+0188] [ALPM-SCRIPTLET] Inconsistency detected by ld.so: ../sysdeps/x86_64/d1-machine.h: 487: elf_machine_rela_relative: Assertion `ELFWCR_T
YPE) (reloc->r_info) == R_X86_64 RELATIVE' failed!
[2823-18-27T18:13:46+0100] [ALPM-SCRIPTLET] => dkms install --no-depmod v4121oopback/8.12.7 -k 6.5.9-arch2-1 [2823-18-27T18:13:46+0188] [ALPM-SCRIPTLET] Inconsistency detected by ld.so: ../sysdeps/x86_64/d1-machine.h: 487: elf_machine_rela_relative: Assertion `ELFW(R_T YPE) (reloc->r_info)=R_X86_64_RELATIVE' failed!
[2823-18-27T18:13:46+0108] [ALPM-SCRIPTLET] Inconsistency detected by ld.so: ../sysdeps/x86_64/d1-machine.h: 487: elf_machine_rela_relative: Assertion `ELFW(R_T YPE) (reloc->r_info) == R_X86_64_RELATIVE' failed!
[2823-18-27T18:13:46+0108] [ALPM-SCRIPTLET] Inconsistency detected by ld.so: ../sysdeps/x86_64/d1-machine.h: 487: elf_machine_rela_relative: Assertion `ELFW(R_T YPE) (reloc->r_info) == R_X86_64_RELATIVE' failed!
[2823-18-27T18:13:48+0188] [ALPM-SCRIPTLET] Inconsistency detected by ld.so: ../sysdeps/x86_64/dl-machine.h: 487: elf_machine_rela_relative: Assertion `ELFW(R_T YPE) (reloc->r_info) == R_X86_64_RELATIVE' failed! [2823-18-27T18:13:48+8188] [ALPM-SCRIPTLET] ==> depmod 6.1.60-1-lts 2823-18-27T18:13:48+0108 ] [ALPM-SCRIPTLET] Inconsistency detected by ld.so: ../sysdeps/x86_64/d1-machine.h: 487: elf_machine_rela_relative: Assertion `ELFW(R_T YPE) ( reloc->r_info) == R_X86_64_RELATIVE' failed!
[
[
2823-18-27T18:13:48+0188] [ALPM-SCRIPTLET] ==> WARNING: depmod 6.1.68-1-lts' exited 127
[
2823-18-27T18:13:48+0188] [ALPM-SCRIPTLET] ==> depmod 6.5.9-arch2-1 [2823-18-27T18:13:48+0108] [ALPM-SCRIPTLET] Inconsistency detected by ld.so: ../sysdeps/x86_64/d1-machine.h: 487: elf_machine_rela_relative: Assertion `ELFH(R_T
YPE) (reloc->r_info) == R_X86_64_RELATIVE' failed!
[2823-18-27T18:13:48+8188] [ALPM-SCRIPTLET] ==> HARNING: depmod 6.5.9-arch2-1' exited 127 2823-18-27T18:13:48+0188] [ALPM-SCRIPTLET] Inconsistency detected by ld.so: ../sysdeps/x86_64/d1-machine.h: 487: elf_machine_rela_relative: Assertion `ELFW(R_T
[
2823-18-27T18:13:48+0108] [ALPM] running '98-mkinitcpio-install.hook'...
[
YPE) (reloc->r_info) == R_X86_64_RELATIVE' failed! 2823-18-27T18:13:48+0188] [ALPM-SCRIPTLET] Inconsistency detected by Id.so: ../sysdeps/x86_64/d1-machine.h: 487: elf_machine_rela_relative: Assertion `ELFW(R_T
[
YPE) (reloc->r_info) == R_X86_64_RELATIVE' failed!
[2823-18-27T18:13:48+0188] [ALPM-SCRIPTLET] Inconsistency detected by ld.so: ../sysdeps/x86_64/d1-machine.h: 487: elf_machine_rela_relative: Assertion `ELFW(R_T
YPE) (reloc->r_info) == R_X86_64_RELATIVE' failed!
[2823-18-27T18:13:48+0108] [ALPM-SCRIPTLET] Inconsistency detected by ld.so: ../sysdeps/x86_64/d1-machine.h: 487: elf_machine_rela_relative: Assertion `ELFW(R_T
YPE) (reloc->r_info) == R_X86_64_RELATIVE' failed!
[2823-18-27T18:13:48+0188] [ALPM-SCRIPTLET] ==> Building image from preset: /etc/mkinitcpio.d/linux-lts.preset: 'default'
[2823-18-27T18:13:48+0188] [ALPM-SCRIPTLET] ==> Using default configuration file: /etc/mkinitcpio.conf" [2823-18-27T18:13:48+8188] [ALPM-SCRIPTLET] -> -k /boot/vmlinuz-linux-1ts -g /boot/initramfs-linux-lts.ing --microcode /boot/and-ucode.img [2823-18-27T18:13:48+8180] [ALPM-SCRIPTLET] ==> ERROR: specified kernel image does not exist: /boot/vmlinuz-linux-Its'
[2823-18-27T18:13:48+0188] [ALPM-SCRIPTLET] => Building image from preset: /etc/mkinitcpio.d/linux-lts.preset: 'fallback'
[2823-18-27T18:13:48+0188] [ALPM-SCRIPTLET) ==>
Using default configuration file: /etc/mkinitcpio.conf" [2823-18-27T18:13:48+0188] [ALPM-SCRIPTLET] -> -k /boot/vmlinuz-linux-lts -g /boot/initramfs-linux-lts-fallback.img -S autodetect --microcode /boot/and-ucode.
img
[2823-18-27T18:13:49+0188] [ALPM-SCRIPTLET] ==> ERROR: specified kernel image does not exist: /boot/vmlinuz-linux-lts'
[2823-18-27T18:13:49+8188] [ALPM-SCRIPTLET] ==> Building image from preset: /etc/mkinitcpio.d/linux.preset: 'default' [2823-18-27T18:13:49+8188] [ALPM-SCRIPTLET] ==> Using default configuration file: /etc/mkinitcpio.conf"
[2823-18-27T18:13:49+8188] [ALPM-SCRIPTLET] -> -k
/boot/vmlinuz-linux -g /boot/initramfs-linux.img --microcode /boot/and-ucode.img [2823-18-27T18:13:49+0108] [ALPM-SCRIPTLET] ==> ERROR: specified kernel image does not exist: /boot/vmlinuz-linux
[2823-18-27T18:13:49+8188] [ALPM-SCRIPTLET] ==> Building image from preset: /etc/mkinitcpio.d/linux.preset: 'fallback' [2823-18-27T18:13:49+8180] [ALPM-SCRIPTLET] ==> Using default configuration file: /etc/akinitcpio.conf"
[2823-18-27T18:13:49+8188] [ALPM-SCRIPTLET] -> -k/boot/valinuz-linux -g /boot/initramfs-linux-fallback.ing -S autodetect --microcode /boot/and-ucode. ing [2823-18-27T18:13:49+8188] [ALPM-SCRIPTLET] ==> ERROR: specified kernel image does not exist: /boot/vmlinuz-linux
[2823-18-27T18:13:49+8108] [ALPM] running 'fontconfig.hook
[2823-18-27T18:13:49+8188] [ALPM] running 'gdk-pixbuf-query-loaders.hook'...
[2823-18-27T18:13:49+8188] [ALPM] running 'glib-compile-schemas.hook'...
[2823-18-27T18:13:49+0108] [ALPM] running 'gtk-update-icon-cache.hook'...
[2823-18-27T18:13:49+8188] [ALPM] running 'gtk4-querymodules.hook'...
[2823-18-27T18:13:49+0108] [ALPM] running 'texinfo-install.hook'...
[2823-18-27T18:13:49+0188] [ALPM] running 'update-desktop-database.hook'...
[2823-18-27T18:13:49+0188] [ALPM] running xorg-mkfontscale.hook'...
2823-18-27T18:13:49+8188 CALPM-SCRIPTLET] Inconsistency detected by Id.so: ../sysdeps/x86_64/dl-machine.h: 487: elf_machine_rela_relative: Assertion `ELFWCR_T
YPE) (reloc->r_info) == R_X86_64_RELATIVE' failed!

Afterwards most commands (including pacman) fail with:

Inconsistency detected by ld.so: ../sysdeps/x86_64/d1-machine.h: 487: elf_machine_rela_relative: Assertion `ELFW(R_T
YPE) (reloc->r_info) == R_X86_64_RELATIVE' failed!

I tried rebooting the machine but annoyingly that's now brokwn. I think something related to mkinitcpio during the update has gone wrong and the kernel files are not in /boot anymore.

I booted using arch's USB, mount / and /boot and arch-chrootet into /mnt. Tried running pacman and it's giving me the same error. I looked in /boot and none of the img files are present.

Any idea what's going on and how I can recover from this?

seth

Member

From: Won't reply 2 private help req

Registered: 2012-09-03

Posts: 76,066

Re: pacman update broke ld.so and bootloader

Don't chroot - the installed system is fundamentally corrupted and can't be used to fix itself.
https://wiki.archlinux.org/title/Pacman … an_upgrade
"--sysroot" might likewise fail and you'll have to use "--root /mnt --cachedir /mnt/var/cache/pacman/pkg/"

You can use

LC_ALL=C pacman --root /mnt -Qkk 2>&1 | grep -v ', 0 altered files' | tee /tmp/broken_packages.txt

to gage how bad the situation is

cat /tmp/broken_packages.txt | curl -F 'file=@-' 0x0.st

will post that and get you a url to share.

---

How to upload text · How to boot w/o GUI · Disable Windows Fast-Start! · Fix your xinitrc

notmilad

Member

Registered: 2020-05-31

Posts: 11

Re: pacman update broke ld.so and bootloader

Thanks @seth!!! You were right, "--sysroot" failed but "--root /mnt --cachedir /mnt/var/cache/pacman/pkg/" did work and I managed to (re)install enough to boot. Once I managed to boot I had to do the step 3.8 a few times (+ the AUR version) to get rid of all the various random errors and broken things!

I noticed a lot of warnings in the form of "warning: could not get file information for usr/lib/{some package}" but I _think_ they've went away after reinstalling everything. Is there a way to check the health of all packages and libraries in ld.so?

Thank you again for all the pointers.

seth

Member

From: Won't reply 2 private help req

Registered: 2012-09-03

Posts: 76,066

Re: pacman update broke ld.so and bootloader

Is there a way to check the health of all packages and libraries in ld.so?

You can use

LC_ALL=C pacman --root /mnt -Qkk 2>&1 | grep -v ', 0 altered files' | tee /tmp/broken_packages.txt

to gage how bad the situation is

---

How to upload text · How to boot w/o GUI · Disable Windows Fast-Start! · Fix your xinitrc

notmilad

Member

Registered: 2020-05-31

Posts: 11

Re: pacman update broke ld.so and bootloader

this doesn't look good does it?

❯ pacman -Qkk 2>&1 | grep -v ', 0 altered files'
warning: 1password: /opt/1Password/1Password-BrowserSupport (GID mismatch)
warning: 1password: /opt/1Password/1Password-BrowserSupport (Permissions mismatch)
warning: 1password: /opt/1Password/1Password-KeyringHelper (GID mismatch)
warning: 1password: /opt/1Password/1Password-KeyringHelper (Permissions mismatch)
warning: 1password-cli: /usr/bin/op (GID mismatch)
warning: 1password-cli: /usr/bin/op (Permissions mismatch)
warning: amd-ucode: /boot/amd-ucode.img (Permissions mismatch)
warning: audit: /etc/libaudit.conf (failed to calculate MD5 checksum)
warning: audit: /etc/libaudit.conf (failed to calculate SHA256 checksum)
warning: audit: /etc/audit/audisp-remote.conf (failed to calculate MD5 checksum)
warning: audit: /etc/audit/audisp-remote.conf (failed to calculate SHA256 checksum)
warning: audit: /etc/audit/zos-remote.conf (failed to calculate MD5 checksum)
warning: audit: /etc/audit/zos-remote.conf (failed to calculate SHA256 checksum)
warning: audit: /etc/audit/plugins.d/af_unix.conf (Permission denied)
warning: audit: /etc/audit/plugins.d/au-remote.conf (Permission denied)
warning: audit: /etc/audit/plugins.d/audispd-zos-remote.conf (Permission denied)
warning: audit: /etc/audit/plugins.d/syslog.conf (Permission denied)
warning: bind: /etc/named.conf (failed to calculate MD5 checksum)
warning: bind: /etc/named.conf (failed to calculate SHA256 checksum)
warning: bind: /var/named/127.0.0.zone (Permission denied)
warning: bind: /var/named/localhost.ip6.zone (Permission denied)
warning: bind: /var/named/localhost.zone (Permission denied)
warning: bluez: /etc/bluetooth (Permissions mismatch)
warning: bluez-utils: /etc/bluetooth (Permissions mismatch)
warning: cups: /etc/cups/classes.conf (Permissions mismatch)
warning: cups: /etc/cups/classes.conf (failed to calculate MD5 checksum)
warning: cups: /etc/cups/classes.conf (failed to calculate SHA256 checksum)
warning: cups: /etc/cups/cups-files.conf (failed to calculate MD5 checksum)
warning: cups: /etc/cups/cups-files.conf (failed to calculate SHA256 checksum)
warning: cups: /etc/cups/cups-files.conf.default (failed to calculate MD5 checksum)
warning: cups: /etc/cups/cups-files.conf.default (failed to calculate SHA256 checksum)
warning: cups: /etc/cups/cupsd.conf (failed to calculate MD5 checksum)
warning: cups: /etc/cups/cupsd.conf (failed to calculate SHA256 checksum)
warning: cups: /etc/cups/cupsd.conf.default (failed to calculate MD5 checksum)
warning: cups: /etc/cups/cupsd.conf.default (failed to calculate SHA256 checksum)
warning: cups: /etc/cups/printers.conf (Permissions mismatch)
1password: 115 total files, 2 altered files
1password-cli: 8 total files, 1 altered file
amd-ucode: 7 total files, 1 altered file
audit: 208 total files, 7 altered files
bind: 340 total files, 4 altered files
backup file: bluez: /etc/bluetooth/main.conf (Modification time mismatch)
backup file: bluez: /etc/bluetooth/main.conf (MD5 checksum mismatch)
backup file: bluez: /etc/bluetooth/main.conf (SHA256 checksum mismatch)
bluez: 61 total files, 1 altered file
bluez-utils: 69 total files, 1 altered file
backup file: cups: /etc/cups/printers.conf (Modificawarning: cups: /etc/cups/printers.conf (failed to calculate MD5 checksum)
warning: cups: /etc/cups/printers.conf (failed to calculate SHA256 checksum)
warning: cups: /etc/cups/snmp.conf (failed to calculate MD5 checksum)
warning: cups: /etc/cups/snmp.conf (failed to calculate SHA256 checksum)
warning: cups: /etc/cups/snmp.conf.default (failed to calculate MD5 checksum)
warning: cups: /etc/cups/snmp.conf.default (failed to calculate SHA256 checksum)
warning: cups: /usr/bin/cupsd (failed to calculate MD5 checksum)
warning: cups: /usr/bin/cupsd (failed to calculate SHA256 checksum)
warning: cups: /var/cache/cups/rss (Permission denied)
warning: cups: /var/spool/cups/tmp (Permission denied)
warning: dbus: /usr/lib/dbus-1.0/dbus-daemon-launch-helper (failed to calculate MD5 checksum)
warning: dbus: /usr/lib/dbus-1.0/dbus-daemon-launch-helper (failed to calculate SHA256 checksum)
warning: filesystem: /etc/crypttab (failed to calculate MD5 checksum)
warning: filesystem: /etc/crypttab (failed to calculate SHA256 checksum)
warning: filesystem: /etc/gshadow (failed to calculate MD5 checksum)
warning: filesystem: /etc/gshadow (failed to calculate SHA256 checksum)
warning: filesystem: /etc/resolv.conf (File type mismatch)
warning: filesystem: /etc/shadow (failed to calculate MD5 checksum)
warning: filesystem: /etc/shadow (failed to calculate SHA256 checksum)
warning: filesystem: /usr/share/factory/etc/crypttab (failed to calculate MD5 checksum)
warning: filesystem: /usr/share/factory/etc/crypttab (failed to calculate SHA256 checksum)
warning: filesystem: /usr/share/factory/etc/gshadow (failed to calculate MD5 checksum)
warning: filesystem: /usr/share/factory/etc/gshadow (failed to calculate SHA256 checksum)
warning: filesystem: /usr/share/factory/etc/shadow (failed to calculate MD5 checksum)
warning: filesystem: /usr/share/factory/etc/shadow (failed to calculate SHA256 checksum)
tion time mismatch)
backup file: cups: /etc/cups/printers.conf (Size mismatch)
cups: 942 total files, 11 altered files
dbus: 93 total files, 1 altered file
backup file: filesystem: /etc/fstab (Modification time mismatch)
backup file: filesystem: /etc/fstab (Size mismatch)
backup file: filesystem: /etc/fstab (MD5 checksum mismatch)
backup file: filesystem: /etc/fstab (SHA256 checksum mismatch)
backup file: filesystem: /etc/group (Modification time mismatch)
backup file: filesystem: /etc/group (Size mismatch)
backup file: filesystem: /etc/group (MD5 checksum mismatch)
backup file: filesystem: /etc/group (SHA256 checksum mismatch)
backup file: filesystem: /etc/gshadow (Modification time mismatch)
backup file: filesystem: /etc/gshadow (Size mismatch)
backup file: filesystem: /etc/hosts (Modification time mismatch)
backup file: filesystem: /etc/hosts (MD5 checksum mismatch)
backup file: filesystem: /etc/hosts (SHA256 checksum mismatch)
backup file: filesystem: /etc/passwd (Modification time mismatch)
backup file: filesystem: /etc/passwd (Size mismatch)
backup file: filesystem: /etc/passwd (MD5 checksum mismatch)
backup file: filesystem: /etc/passwd (SHA256 checksum mismatch)
backup file: filesystem: /etc/shadow (Modification time mismatch)
backup file: filesystem: /etc/shadow (Size mismatch)
backup file: filesystem: /etc/shells (Modification time mismatch)
backup file: filesystem: /etc/shells (Size mismatch)
backup file: filesystem: /etc/shells (MD5 checksum mismatch)
backup file: filesystem: /etc/shells (SHA256 checksum mismatch)
filesystem: 120 total files, 7 altered files
flac: 48 warning: geoclue: /usr/share/polkit-1/rules.d/org.freedesktop.GeoClue2.rules (Permission denied)
warning: ghc-libs: /usr/lib/ghc-9.0.2/package.conf.d/package.cache (Modification time mismatch)
warning: ghc-libs: /usr/lib/ghc-9.0.2/package.conf.d/package.cache (MD5 checksum mismatch)
warning: ghc-libs: /usr/lib/ghc-9.0.2/package.conf.d/package.cache (SHA256 checksum mismatch)
warning: go: /usr/lib/go/pkg/tool/linux_amd64/addr2line (MD5 checksum mismatch)
warning: go: /usr/lib/go/pkg/tool/linux_amd64/addr2line (SHA256 checksum mismatch)
warning: gssproxy: /var/lib/gssproxy/rcache (Permissions mismatch)
geoclue: 116 total files, 1 altered file
ghc-libs: 1447 total files, 1 altered file
backup file: glibc: /etc/locale.gen (Modification time mismatch)
backup file: glibc: /etc/locale.gen (Size mismatch)
backup file: glibc: /etc/locale.gen (MD5 checksum mismatch)
backup file: glibc: /etc/locale.gen (SHA256 checksum mismatch)
go: 13937 total files, 1 altered file
gssproxy: 38 total files, 1 altered file
gtk2: 819 total files, 0 alterewarning: gvfs: /usr/share/polkit-1/rules.d/org.gtk.vfs.file-operations.rules (Permission denied)
warning: java-runtime-common: /usr/lib/jvm/default (Symlink path mismatch)
warning: java-runtime-common: /usr/lib/jvm/default (Modification time mismatch)
warning: java-runtime-common: /usr/lib/jvm/default-runtime (Symlink path mismatch)
warning: java-runtime-common: /usr/lib/jvm/default-runtime (Modification time mismatch)
warning: lariza-git: /usr/lib/lariza (No such file or directory)
warning: lariza-git: /usr/lib/lariza/web_extensions (No such file or directory)
warning: lariza-git: /usr/lib/lariza/web_extensions/we_adblock.so (No such file or directory)
d files
gvfs: 333 total files, 1 altered file
java-runtime-common: 21 total files, 2 altered files
lariza-git: 19 total files, 3 altered files
libssh2: 200 warning: libutempter: /usr/lib/utempter/utempter (GID mismatch)
warning: libutempter: /usr/lib/utempter/utempter (Permissions mismatch)
libutempter: 20 total files, 1 altered file
lm_sensors: 48 total files, 0 awarning: neovim: /usr/share/nvim/runtime/doc/tags (Modification time mismatch)
warning: nfs-utils: /usr/bin/mount.nfs (failed to calculate MD5 checksum)
warning: nfs-utils: /usr/bin/mount.nfs (failed to calculate SHA256 checksum)
warning: nfs-utils: /var/lib/nfs/statd/state (Permission denied)
warning: nfs-utils: /var/lib/nfs/statd/sm (Permission denied)
warning: nfs-utils: /var/lib/nfs/statd/sm.bak (Permission denied)
ltered files
neovim: 1875 total files, 1 altered file
nfs-utils: 124 total files, 4 altered files
backup file: nfsidmap: /etc/idmapd.conf (Modification time mismatch)
backup file: nfsidmap: /etc/idmapd.conf (Size mismatch)
backup file: nfsidmap: /etc/idmapd.conf (MD5 checksum mismatch)
backup file: nfsidmap: /etc/idmapd.conf (SHA256 checksum mismatch)
openmpi: 800 total files, 0 alterwarning: openssh: /usr/lib/ssh/ssh-keysign (failed to calculate MD5 checksum)
warning: openssh: /usr/lib/ssh/ssh-keysign (failed to calculate SHA256 checksum)
ed files
backup file: openssh: /etc/ssh/sshd_config (Modification time mismatch)
backup file: openssh: /etc/ssh/sshd_config (Size mismatch)
backup file: openssh: /etc/ssh/sshd_config (MD5 checksum mismatch)
backup file: openssh: /etc/ssh/sshd_config (SHA256 checksum mismatch)
openssh: 63 total files, 1 altered file
backup file: pacman: /etc/pacman.conf (Modification time mismatch)
backup file: pacman: /etc/pacman.conf (Size mismatch)
backup file: pacman: /etc/pacman.conf (MD5 checksum mismatch)
backup file: pacman: /etc/pacman.conf (SHA256 checksum mismatch)
backup file: pacman-mirrorlist: /etc/pacman.d/mirrorlist (Modification time mismatch)
backup file: pacman-mirrorlist: /etc/pacman.d/mirrorlist (Size mismatch)
backup file: pacman-mirrorlist: /etc/pacman.d/mirrorlist (MD5 checksum mismatch)
backup file: pacman-mirrorlist: /etc/pacman.d/mirrorlist (SHA256 checksum mismatch)
perl-xwarning: polkit: /usr/share/polkit-1/rules.d/50-default.rules (Permission denied)
polkit: 217 total files, 1 altered file
rubwarning: shadow: /etc/default/useradd (failed to calculate MD5 checksum)
warning: shadow: /etc/default/useradd (failed to calculate SHA256 checksum)
warning: shadow: /usr/bin/groupmems (GID mismatch)
warning: shadow: /usr/bin/groupmems (Permissions mismatch)
warning: shadow: /usr/bin/groupmems (failed to calculate MD5 checksum)
warning: shadow: /usr/bin/groupmems (failed to calculate SHA256 checksum)
warning: strongswan: /etc/ipsec.secrets (failed to calculate MD5 checksum)
warning: strongswan: /etc/ipsec.secrets (failed to calculate SHA256 checksum)
warning: strongswan: /etc/swanctl/swanctl.conf (failed to calculate MD5 checksum)
warning: strongswan: /etc/swanctl/swanctl.conf (failed to calculate SHA256 checksum)
warning: sudo: /etc/sudoers (failed to calculate MD5 checksum)
warning: sudo: /etc/sudoers (failed to calculate SHA256 checksum)
shadow: 588 total files, 2 altered files
backup file: strongswan: /etc/ipsec.secrets (Modification time mismatch)
backup file: strongswan: /etc/ipsec.secrets (Size mismatch)
strongswan: 378 total files, 2 altered files
backup file: sudo: /etc/sudoers (Modification time mismatch)
backup file: sudo: /etc/sudoers (Size mismatch)
sudo: 236 total files, 1 altered file
svt-av1: 29 warning: systemd: /usr/share/polkit-1/rules.d/systemd-networkd.rules (Permission denied)
warning: systemd: /var/log/journal (GID mismatch)
warning: texlive-basic: /etc/texmf/tex/generic/config/language.dat (Modification time mismatch)
warning: texlive-basic: /etc/texmf/tex/generic/config/language.dat (Size mismatch)
warning: texlive-basic: /etc/texmf/tex/generic/config/language.dat (MD5 checksum mismatch)
warning: texlive-basic: /etc/texmf/tex/generic/config/language.dat (SHA256 checksum mismatch)
warning: texlive-basic: /etc/texmf/tex/generic/config/language.dat.lua (Modification time mismatch)
warning: texlive-basic: /etc/texmf/tex/generic/config/language.dat.lua (Size mismatch)
warning: texlive-basic: /etc/texmf/tex/generic/config/language.dat.lua (MD5 checksum mismatch)
warning: texlive-basic: /etc/texmf/tex/generic/config/language.dat.lua (SHA256 checksum mismatch)
warning: texlive-basic: /etc/texmf/tex/generic/config/language.def (Modification time mismatch)
warning: texlive-basic: /etc/texmf/tex/generic/config/language.def (Size mismatch)
warning: texlive-basic: /etc/texmf/tex/generic/config/language.def (MD5 checksum mismatch)
warning: texlive-basic: /etc/texmf/tex/generic/config/language.def (SHA256 checksum mismatch)
backup file: systemd: /etc/systemd/networkd.conf (Modification time mismatch)
backup file: systemd: /etc/systemd/networkd.conf (Size mismatch)
backup file: systemd: /etc/systemd/networkd.conf (MD5 checksum mismatch)
backup file: systemd: /etc/systemd/networkd.conf (SHA256 checksum mismatch)
backup file: systemd: /etc/systemd/resolved.conf (Modification time mismatch)
backup file: systemd: /etc/systemd/resolved.conf (Size mismatch)
backup file: systemd: /etc/systemd/resolved.conf (MD5 checksum mismatch)
backup file: systemd: /etc/systemd/resolved.conf (SHA256 checksum mismatch)
systemd: 1366 total files, 2 altered files
backup file: texlive-basic: /etc/texmf/web2c/fmtutil.cnf (Modification time mismatch)
backup file: texlive-basic: /etc/texmf/web2c/fmtutil.cnf (Size mismatch)
backup file: texlive-basic: /etc/texmf/web2c/fmtutil.cnf (MD5 checksum mismatch)
backup file: texlive-basic: /etc/texmf/web2c/fmtutil.cnf (SHA256 checksum mismatch)
texlive-basic: 2667 total files, 3 altered files

seth

Member

From: Won't reply 2 private help req

Registered: 2012-09-03

Posts: 76,066

Re: pacman update broke ld.so and bootloader

Please don't copy and paste out of the pager and since you're no longer on the iso, "sudo pacman …"  - a lot of the warnings will go away and on a glimpse, lariza-git is the only real problem.

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