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Running makepkg with the --skipinteg flag will cause makepkg to skip integrity checks with md5sums, but not sha256sums. I ran into this problem while making a bin32-wine package with a custom build of wine, and had to comment out the sha256sums line in the PKGBUILD in order to get the package to build.
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--skipinteg doesn't ignore *sums, it just makes makepkg not fail when *sums aren't present (emulating default behaviour prior to pacman 3.3).
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Can you give exact output from makepkg and the PKGBUILD being used? Even better, do it in a bug report....
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[zauber@myhost bin32-wine]$ makepkg --skipinteg
==> Making package: bin32-wine 1.1.32-1 x86_64 (Sun Nov 1 15:12:44 EST 2009)
==> Checking Runtime Dependencies...
==> Checking Buildtime Dependencies...
==> Retrieving Sources...
-> Found wine-1.1.32-1-i686.pkg.tar.gz in build dir
==> Validating source files with md5sums...
wine-1.1.32-1-i686.pkg.tar.gz ... FAILED
==> ERROR: One or more files did not pass the validity check!Offline
That is an issue with the bin32-wine package. It seems to need its md5sums corrected.
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