Arch Linux

wilberfan

Member

From: So. Cal

Registered: 2010-12-18

Posts: 264

Re: glibc update refusing to proceed. File ownership problem

How did you do that?

This is the story of my glibc update: link
After this I fix my system following the advice of progandy: link

and

# rm -Rf lib
# ln -s usr/lib lib

So, I rebooted and open a terminal session:

# sudo -Syu --ignore glibc
# sudo -Su
Password: 
:: Starting full system upgrade...
resolving dependencies...
looking for inter-conflicts...

Targets (1): glibc-2.16.0-2

Total Installed Size:   33.94 MiB
Net Upgrade Size:       0.00 MiB

Proceed with installation? [Y/n] y
(1/1) checking package integrity                   [######################] 100%
(1/1) loading package files                        [######################] 100%
(1/1) checking for file conflicts                  [######################] 100%
error: failed to commit transaction (conflicting files)
glibc: /lib exists in filesystem
glibc: /usr/lib/ld-2.16.so exists in filesystem
glibc: /usr/lib/ld-linux.so.2 exists in filesystem
glibc: /usr/lib/libBrokenLocale-2.16.so exists in filesystem
glibc: /usr/lib/libBrokenLocale.so.1 exists in filesystem
glibc: /usr/lib/libSegFault.so exists in filesystem
glibc: /usr/lib/libanl-2.16.so exists in filesystem
glibc: /usr/lib/libanl.so.1 exists in filesystem
glibc: /usr/lib/libc-2.16.so exists in filesystem
glibc: /usr/lib/libc.so.6 exists in filesystem
glibc: /usr/lib/libcidn-2.16.so exists in filesystem
glibc: /usr/lib/libcidn.so.1 exists in filesystem
glibc: /usr/lib/libcrypt-2.16.so exists in filesystem
glibc: /usr/lib/libcrypt.so.1 exists in filesystem
glibc: /usr/lib/libdl-2.16.so exists in filesystem
glibc: /usr/lib/libdl.so.2 exists in filesystem
glibc: /usr/lib/libm-2.16.so exists in filesystem
glibc: /usr/lib/libm.so.6 exists in filesystem
glibc: /usr/lib/libmemusage.so exists in filesystem
glibc: /usr/lib/libnsl-2.16.so exists in filesystem
glibc: /usr/lib/libnsl.so.1 exists in filesystem
glibc: /usr/lib/libnss_compat-2.16.so exists in filesystem
glibc: /usr/lib/libnss_compat.so.2 exists in filesystem
glibc: /usr/lib/libnss_db-2.16.so exists in filesystem
glibc: /usr/lib/libnss_db.so.2 exists in filesystem
glibc: /usr/lib/libnss_dns-2.16.so exists in filesystem
glibc: /usr/lib/libnss_dns.so.2 exists in filesystem
glibc: /usr/lib/libnss_files-2.16.so exists in filesystem
glibc: /usr/lib/libnss_files.so.2 exists in filesystem
glibc: /usr/lib/libnss_hesiod-2.16.so exists in filesystem
glibc: /usr/lib/libnss_hesiod.so.2 exists in filesystem
glibc: /usr/lib/libnss_nis-2.16.so exists in filesystem
glibc: /usr/lib/libnss_nis.so.2 exists in filesystem
glibc: /usr/lib/libnss_nisplus-2.16.so exists in filesystem
glibc: /usr/lib/libnss_nisplus.so.2 exists in filesystem
glibc: /usr/lib/libpcprofile.so exists in filesystem
glibc: /usr/lib/libpthread-2.16.so exists in filesystem
glibc: /usr/lib/libpthread.so.0 exists in filesystem
glibc: /usr/lib/libresolv-2.16.so exists in filesystem
glibc: /usr/lib/libresolv.so.2 exists in filesystem
glibc: /usr/lib/librt-2.16.so exists in filesystem
glibc: /usr/lib/librt.so.1 exists in filesystem
glibc: /usr/lib/libthread_db-1.0.so exists in filesystem
glibc: /usr/lib/libthread_db.so.1 exists in filesystem
glibc: /usr/lib/libutil-2.16.so exists in filesystem
glibc: /usr/lib/libutil.so.1 exists in filesystem
Errors occurred, no packages were upgraded.

I got my system restored (after borking it) and have the symlinks in place like this gentleman.  I, too, am getting these "exists in filesystem" errors.   I've been thru this thread--but haven't seen a solution to this scenario.   But I'm noobish, so I might have missed it??

---

Hey, be nice...I'm new at this!

progandy

Member

Registered: 2012-05-17

Posts: 5,266

Re: glibc update refusing to proceed. File ownership problem

I got my system restored (after borking it) and have the symlinks in place like this gentleman.  I, too, am getting these "exists in filesystem" errors.   I've been thru this thread--but haven't seen a solution to this scenario.   But I'm noobish, so I might have missed it??

First install busybox from community and open a busybox root shell (sudo busybox sh) just in case something goes wrong. Then you are able to extract /lib and/or /usr/lib from the glibc-pacakges in the pacman-cache if there is a problem. (/var/cache/pacman/pkg/)
You have a symlink in place of /lib and all files are already in /usr/lib. In this particular filesystem state you can try pacman -S --force glibc. If it doesn't succeed, you still have the busybox root shell to repair your system.

Edit: Also keep your browser open so you can still access the archlinux forum. Running applications won't be affected if the glibc fails.

Last edited by progandy (2012-07-21 23:18:08)

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| alias CUTF='LANG=en_XX.UTF-8@POSIX ' |

Jristz

Member

From: America/Santiago

Registered: 2011-06-11

Posts: 1,022

Re: glibc update refusing to proceed. File ownership problem

From a disc-install using archboot:

pacman -Syu --ignore filesystem,glibc
pacman -S filesystem --force --ignore glibc
pacman -Sdd gcc{,-libs} # add all glibc depends here, beware of what packages is used, removing libarchive and other make pacman break, beware and make much precaution
pacman -S glibc
pacman -S gcc mkinitcpio mkinitcpio-busybox busybox grep
pacman -S linux
grub-install /dev/sda
grub-mkconfig -o /boot/grub/grub.cfg
# now only reboot if linux reinstalation work correctle, elsif reinstall base an try again
reboot

for me this work perfect and no problems

if you have problems wathc what package have deps in /lib in theory the only is gcc-libs and gcc, and move them out of here make (for me) work perfect in glibc install

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Well, I suppose that this is somekind of signature, no?

rnarch

Member

Registered: 2012-03-17

Posts: 292

Re: glibc update refusing to proceed. File ownership problem

I have a system which has not been updated for a while. I used to option '--ignore glibc --ignore filesystem' then force installed filesystem, which worked well.  While updating 'linux' it gave message that all modules will be loaded from /usr/lib and should be moved there.  After that (without rebooting) I tried 'pacman -Su' but it failed with the error that /lib still exists.  Ownership command from the wiki showed many files owned by linux and linux-lts. The /lib folder contained 'modules' folder and some ---.so.- files and some links. I tried moving these to /usr/lib folder but that broke the system. All commands from terminal including 'ls', 'reboot' etc gave error that /usr/bin/commandname not found.  I have an image of the installation so I could restore it. I checked other forum posts and the wiki also but not sure how to solve this. How should I proceed to update? Thanks for your help.

Last edited by rnarch (2012-07-22 02:16:43)

airencracken

Member

From: California

Registered: 2010-04-17

Posts: 23

Re: glibc update refusing to proceed. File ownership problem

Easiest way to go about this is to use a livecd and

pacman -r /path/to/your/arch/here -Syu

rnarch

Member

Registered: 2012-03-17

Posts: 292

Re: glibc update refusing to proceed. File ownership problem

Thanks. I will try it and give you the feedback.  Is this a good method for any problematic update?

jasonwryan

Anarchist

From: .nz

Registered: 2009-05-09

Posts: 30,424

Website

Re: glibc update refusing to proceed. File ownership problem

See Allan's blogpost...

Merging with the glibc stickied thread.

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Arch + dwm   •   Mercurial repos  •   Surfraw

Registered Linux User #482438

rnarch

Member

Registered: 2012-03-17

Posts: 292

Re: glibc update refusing to proceed. File ownership problem

I tried the command (pacman -r /path/to/your/arch/here -Syu) from another arch installation but it stops with error on about 100 'files exist in filesystem' (from docbook-xsl:, libtiff:, linux-firmware:, virtuoso:, etc)

Last edited by rnarch (2012-07-22 05:49:38)

cfr

Member

From: Cymru

Registered: 2011-11-27

Posts: 7,148

Re: glibc update refusing to proceed. File ownership problem

I tried the command (pacman -r /path/to/your/arch/here -Syu) from another arch installation but it stops with error on about 100 'files exist in filesystem' (from docbook-xsl:, libtiff:, linux-firmware:, virtuoso:, etc)

You may need to post exactly what you did and the actual output. As you described things, this stuff should already have been updated so it shouldn't be showing up at this point. Without the details, I think it will be hard for anybody to help you.

---

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rnarch

Member

Registered: 2012-03-17

Posts: 292

Re: glibc update refusing to proceed. File ownership problem

I have filesystem 2012.2-5 so that also needs to be updated. The command given was:

sudo pacman -Syu --ignore glibc,filesystem

The error output was as follows (it is long and still partial; I will remove it if not further required):

...........
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/hyphenate.verbatim.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/hyphenate.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/id.warnings.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/ignore.image.scaling.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/img.src.path.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/index.div.title.properties.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/index.entry.properties.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/index.links.to.section.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/index.method.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/index.number.separator.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/index.on.role.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/index.on.type.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/index.page.number.properties.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/index.prefer.titleabbrev.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/index.preferred.page.properties.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/index.range.separator.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/index.term.separator.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/informal.object.properties.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/informalequation.properties.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/informalexample.properties.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/informalfigure.properties.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/informaltable.properties.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/inherit.keywords.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/inner.region.content.properties.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/insert.link.page.number.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/insert.olink.page.number.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/insert.olink.pdf.frag.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/insert.xref.page.number.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/itemizedlist.label.properties.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/itemizedlist.label.width.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/itemizedlist.properties.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/javahelp.encoding.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/keep.relative.image.uris.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/keyboard.nav.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/l10n.gentext.default.language.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/l10n.gentext.language.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/l10n.gentext.use.xref.language.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/l10n.lang.value.rfc.compliant.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/label.from.part.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/line-height.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/linenumbering.everyNth.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/linenumbering.extension.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/linenumbering.separator.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/linenumbering.width.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/link.mailto.url.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/list.block.properties.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/list.block.spacing.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/list.item.spacing.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/make.clean.html.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/make.graphic.viewport.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/make.index.markup.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/make.single.year.ranges.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/make.valid.html.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/make.year.ranges.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.authors.section.enabled.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.base.url.for.relative.links.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.break.after.slash.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.charmap.enabled.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.charmap.subset.profile.english.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.charmap.subset.profile.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.charmap.uri.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.charmap.use.subset.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.copyright.section.enabled.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.endnotes.are.numbered.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.endnotes.list.enabled.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.endnotes.list.heading.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.font.funcprototype.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.font.funcsynopsisinfo.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.font.links.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.font.table.headings.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.font.table.title.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.funcsynopsis.style.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.hyphenate.computer.inlines.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.hyphenate.filenames.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.hyphenate.urls.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.hyphenate.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.indent.blurbs.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.indent.lists.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.indent.refsect.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.indent.verbatims.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.indent.width.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.justify.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.output.base.dir.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.output.better.ps.enabled.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.output.encoding.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.output.in.separate.dir.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.output.lang.in.name.enabled.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.output.manifest.enabled.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.output.manifest.filename.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.output.quietly.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.output.subdirs.enabled.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.segtitle.suppress.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.string.subst.map.local.post.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.string.subst.map.local.pre.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.string.subst.map.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.subheading.divider.enabled.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.subheading.divider.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.table.footnotes.divider.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.th.extra1.suppress.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.th.extra2.max.length.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.th.extra2.suppress.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.th.extra3.max.length.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.th.extra3.suppress.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/man.th.title.max.length.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/manifest.in.base.dir.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/manifest.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/manual.toc.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/margin.note.float.type.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/margin.note.properties.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/margin.note.title.properties.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/margin.note.width.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/marker.section.level.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/menuchoice.menu.separator.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/menuchoice.separator.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/minus.image.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/monospace.font.family.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/monospace.properties.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/monospace.verbatim.font.width.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/monospace.verbatim.properties.xml exists in filesystem
docbook-xsl: /usr/share/xml/docbook/xsl-stylesheets-1.77.1/params/multiframe.bottom.bgcolor.xml exists in filesystem
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Errors occurred, no packages were upgraded.

cfr

Member

From: Cymru

Registered: 2011-11-27

Posts: 7,148

Re: glibc update refusing to proceed. File ownership problem

I thought you got these errors when booting from another arch installation and using the -r option with pacman. That is, you said that the initial command (with --ignore for glibc and filesystem) followed by the force upgrade of filesystem completed fine. Things then went a bit haywire and you rebooted from another installation and tried running pacman with the -r option to finish the upgrade but you still got errors. But that's not what you seem to be showing here - it looks like you are now trying to upgrade that other installation and not the original one.

The errors you're showing there look unrelated to the glibc upgrade. Maybe you've got a corrupted pacman database? Or you've installed stuff without pacman?

But I'm pretty confused about exactly what you've done and what results you've got - and for which installations of Arch. Perhaps I'm just not getting it...

---

CLI Paste | How To Ask Questions

Arch Linux | x86_64 | GPT | EFI boot | refind | stub loader | systemd | LVM2 on LUKS
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rnarch

Member

Registered: 2012-03-17

Posts: 292

Re: glibc update refusing to proceed. File ownership problem

The errors were same whether run from same or another installation (usb arch). I had restored the installation from the image file which I had backed up, as I mentioned earlier. So now it is a functional but to be updated installation. The installation has no packages installed without pacman.

cfr

Member

From: Cymru

Registered: 2011-11-27

Posts: 7,148

Re: glibc update refusing to proceed. File ownership problem

OK. So you restored from the image and now even pacman -Syu --ignore glibc,filesystem fails? Whereas it succeeded on the non-restored version?

If you haven't installed anything without pacman, I suspect corruption in the database because I can't think how else pacman would not "know" about those files (which is what it seems to be telling you).

But it seems odd that you'd get this corruption on both installations and for the restored one, only *after* reinstalling the image, which was presumably an image of the filesystem at an *earlier* point. Unless the restore process itself is corrupting the database?

Have you read https://wiki.archlinux.org/index.php/Pa … stem.22.21?

Also: https://bbs.archlinux.org/viewtopic.php?id=56373 re. something being very wrong if you get lots of existence complaints.

EDIT: By 'database', I didn't mean the .db files - just the records pacman keeps generally. I'm not sure that's the right term, though, so don't be mislead by my abuse of it!

Last edited by cfr (2012-07-22 16:14:01)

---

CLI Paste | How To Ask Questions

Arch Linux | x86_64 | GPT | EFI boot | refind | stub loader | systemd | LVM2 on LUKS
Lenovo x270 | Intel(R) Core(TM) i5-7200U CPU @ 2.50GHz | Intel Wireless 8265/8275 | US keyboard w/ Euro | 512G NVMe INTEL SSDPEKKF512G7L

rnarch

Member

Registered: 2012-03-17

Posts: 292

Re: glibc update refusing to proceed. File ownership problem

So, most likely some pacman files are corrupted.

Please help me on another similar installation (which also needs filesystem update as well). The command is:    sudo pacman -Syu --ignore glibc,filesystem
It asks to confirm the packages which cannot be upgraded, but then stops with the error:

looking for inter-conflicts...
error: failed to prepare transaction (could not satisfy dependencies)
:: systemd: requires libsystemd=184
:: xf86-video-nouveau: requires libdrm-nouveau

Last edited by rnarch (2012-07-22 16:40:44)

cfr

Member

From: Cymru

Registered: 2011-11-27

Posts: 7,148

Re: glibc update refusing to proceed. File ownership problem

I don't use either of those. However:
xf86-video-nouveau: depends on libdrm, udev
systemd: depends on acl  dbus-core  libsystemd=186  kmod  libcap  pam  systemd-tools=186  util-linux  xz

What do:

pacman -Qi nouveau
pacman -Qi systemd

give?

If you have nouveau-dri installed, try uninstalling that temporarily. You can reinstall it later but it may be complicating things right now. (I can't quite see how this might be working but I can see the dependencies will be more complicated if you have this installed so temporarily uninstalling should at least simplify things a little.)

It seems it has been some time since you updated your system - that isn't a good policy on Arch. I realise that advice is not going to help with your current issues but you should bear it in mind when you've got past these as a way to avoid future problems.

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Snarkout

Member

Registered: 2005-11-13

Posts: 542

Re: glibc update refusing to proceed. File ownership problem

FWIW, running through the (extremely helpful) post #39, I discovered that "grep" no longer worked.  I hadn't forced a single thing.

# grep '^lib/' /var/lib/pacman/local/*/files
-bash: /bin/grep: No such file or directory

updatedb and locate helped me find grep, which was now /usr/bin/grep - running

/usr/bin/grep '^lib/' /var/lib/pacman/local/*/files

got me what I needed - mostly old AUR installed garbage, and one useful package.  Thanks for the useful megathread, especially the author of post #39 (too pressed for time to dig that up right now).  Hopefully this helps someone.

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cfr

Member

From: Cymru

Registered: 2011-11-27

Posts: 7,148

Re: glibc update refusing to proceed. File ownership problem

@Snarkout,

You should check that /usr/bin is included in your PATH as you are likely to run into other issues otherwise. (This isn't related to other folks' problems with grep etc. following a --force otherwise specifying the full path wouldn't solve the problem.)

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fsckd

Forum Fellow

Registered: 2009-06-15

Posts: 4,173

Re: glibc update refusing to proceed. File ownership problem

@Snarkout: In addition to cfr's post, check if your shell automatically rehashes $PATH (bash does this by default, other shells might require manual action).

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madprops

Member

Registered: 2012-05-26

Posts: 26

Re: glibc update refusing to proceed. File ownership problem

I can't upgrade glibc.

I did pacman -Syu --ignore glibc
then pacman -Su gave me the lib error

find /lib -exec pacman -Qo -- {} +

error: cannot determine ownership of directory '/lib'
/lib/libresolv-2.16.so is owned by glibc 2.16.0-1
/lib/libanl.so.1 is owned by glibc 2.16.0-1
/lib/libnsl.so.1 is owned by glibc 2.16.0-1
/lib/libdl-2.16.so is owned by glibc 2.16.0-1
/lib/libnss_files-2.16.so is owned by glibc 2.16.0-1
/lib/libutil.so.1 is owned by glibc 2.16.0-1
/lib/libcrypt-2.16.so is owned by glibc 2.16.0-1
/lib/libnsl-2.16.so is owned by glibc 2.16.0-1
/lib/libm-2.16.so is owned by glibc 2.16.0-1
/lib/libnss_hesiod.so.2 is owned by glibc 2.16.0-1
/lib/libutil-2.16.so is owned by glibc 2.16.0-1
/lib/libnss_dns.so.2 is owned by glibc 2.16.0-1
/lib/libnss_db.so.2 is owned by glibc 2.16.0-1
/lib/libpthread.so.0 is owned by glibc 2.16.0-1
/lib/libpthread-2.16.so is owned by glibc 2.16.0-1
/lib/libresolv.so.2 is owned by glibc 2.16.0-1
/lib/libthread_db-1.0.so is owned by glibc 2.16.0-1
/lib/ld-linux-x86-64.so.2 is owned by glibc 2.16.0-1
/lib/librt-2.16.so is owned by glibc 2.16.0-1
/lib/libnss_nis-2.16.so is owned by glibc 2.16.0-1
/lib/libBrokenLocale-2.16.so is owned by glibc 2.16.0-1
/lib/libnss_dns-2.16.so is owned by glibc 2.16.0-1
/lib/libnss_compat-2.16.so is owned by glibc 2.16.0-1
/lib/libnss_nis.so.2 is owned by glibc 2.16.0-1
/lib/libnss_nisplus.so.2 is owned by glibc 2.16.0-1
/lib/libc.so.6 is owned by glibc 2.16.0-1
/lib/libmemusage.so is owned by glibc 2.16.0-1
/lib/libthread_db.so.1 is owned by glibc 2.16.0-1
/lib/libnss_compat.so.2 is owned by glibc 2.16.0-1
/lib/libnss_files.so.2 is owned by glibc 2.16.0-1
/lib/ld-2.16.so is owned by glibc 2.16.0-1
/lib/librt.so.1 is owned by glibc 2.16.0-1
/lib/libcrypt.so.1 is owned by glibc 2.16.0-1
/lib/libc-2.16.so is owned by glibc 2.16.0-1
error: cannot determine ownership of directory '/lib/udev'
error: cannot determine ownership of directory '/lib/udev/rules.d'
/lib/libnss_db-2.16.so is owned by glibc 2.16.0-1
/lib/libSegFault.so is owned by glibc 2.16.0-1
/lib/libdl.so.2 is owned by glibc 2.16.0-1
/lib/libcidn-2.16.so is owned by glibc 2.16.0-1
/lib/libpcprofile.so is owned by glibc 2.16.0-1
/lib/libnss_nisplus-2.16.so is owned by glibc 2.16.0-1
/lib/libcidn.so.1 is owned by glibc 2.16.0-1
/lib/libanl-2.16.so is owned by glibc 2.16.0-1
/lib/libm.so.6 is owned by glibc 2.16.0-1
/lib/libBrokenLocale.so.1 is owned by glibc 2.16.0-1
/lib/libnss_hesiod-2.16.so is owned by glibc 2.16.0-1

I think the problem might be the udev files. But i don't know how to proceed.

Pleae help.

Last edited by madprops (2012-07-23 01:33:49)

cfr

Member

From: Cymru

Registered: 2011-11-27

Posts: 7,148

Re: glibc update refusing to proceed. File ownership problem

Are they empty? If so, you can probably just delete them.

What did you get from the grep command given in the instructions?

Last edited by cfr (2012-07-23 01:43:30)

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madprops

Member

Registered: 2012-05-26

Posts: 26

Re: glibc update refusing to proceed. File ownership problem

Are they empty? If so, you can probably just delete them.

What did you get from the grep command given in the instructions?

grep '^lib/' /var/lib/pacman/local/*/files gives me

/var/lib/pacman/local/glibc-2.16.0-1/files:lib/
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/ld-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/ld-linux-x86-64.so.2
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libBrokenLocale-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libBrokenLocale.so.1
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libSegFault.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libanl-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libanl.so.1
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libc-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libc.so.6
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libcidn-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libcidn.so.1
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libcrypt-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libcrypt.so.1
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libdl-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libdl.so.2
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libm-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libm.so.6
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libmemusage.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnsl-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnsl.so.1
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnss_compat-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnss_compat.so.2
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnss_db-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnss_db.so.2
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnss_dns-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnss_dns.so.2
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnss_files-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnss_files.so.2
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnss_hesiod-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnss_hesiod.so.2
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnss_nis-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnss_nis.so.2
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnss_nisplus-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libnss_nisplus.so.2
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libpcprofile.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libpthread-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libpthread.so.0
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libresolv-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libresolv.so.2
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/librt-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/librt.so.1
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libthread_db-1.0.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libthread_db.so.1
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libutil-2.16.so
/var/lib/pacman/local/glibc-2.16.0-1/files:lib/libutil.so.1

cfr

Member

From: Cymru

Registered: 2011-11-27

Posts: 7,148

Re: glibc update refusing to proceed. File ownership problem

So are those directories empty? If so, just remove them.

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madprops

Member

Registered: 2012-05-26

Posts: 26

Re: glibc update refusing to proceed. File ownership problem

So are those directories empty? If so, just remove them.

I removed  the /lib/udev directory and I could upgrade glibc succesfuly.

Thanks.

scippio

Member

Registered: 2007-01-02

Posts: 74

Re: glibc update refusing to proceed. File ownership problem

I have same problem

[root@crom /home/scippio]# find /lib -exec pacman -Qo -- {} +
error: cannot determine ownership of directory '/lib'
/lib/ld-linux-x86-64.so.2 is owned by glibc 2.16.0-1
/lib/libnss_hesiod-2.16.so is owned by glibc 2.16.0-1
/lib/libanl.so.1 is owned by glibc 2.16.0-1
/lib/libpthread.so.0 is owned by glibc 2.16.0-1
/lib/libm.so.6 is owned by glibc 2.16.0-1
/lib/libcidn-2.16.so is owned by glibc 2.16.0-1
/lib/libBrokenLocale.so.1 is owned by glibc 2.16.0-1
/lib/libpcprofile.so is owned by glibc 2.16.0-1
/lib/libresolv.so.2 is owned by glibc 2.16.0-1
/lib/libnss_nis.so.2 is owned by glibc 2.16.0-1
/lib/libcidn.so.1 is owned by glibc 2.16.0-1
/lib/libnss_compat-2.16.so is owned by glibc 2.16.0-1
/lib/libm-2.16.so is owned by glibc 2.16.0-1
/lib/libc.so.6 is owned by glibc 2.16.0-1
/lib/libnss_nisplus.so.2 is owned by glibc 2.16.0-1
/lib/libresolv-2.16.so is owned by glibc 2.16.0-1
/lib/libthread_db-1.0.so is owned by glibc 2.16.0-1
/lib/libnss_compat.so.2 is owned by glibc 2.16.0-1
/lib/libnss_hesiod.so.2 is owned by glibc 2.16.0-1
/lib/libanl-2.16.so is owned by glibc 2.16.0-1
/lib/libnss_db-2.16.so is owned by glibc 2.16.0-1
/lib/libnss_files-2.16.so is owned by glibc 2.16.0-1
/lib/librt-2.16.so is owned by glibc 2.16.0-1
/lib/libnss_db.so.2 is owned by glibc 2.16.0-1
/lib/libnsl-2.16.so is owned by glibc 2.16.0-1
/lib/libutil.so.1 is owned by glibc 2.16.0-1
/lib/libutil-2.16.so is owned by glibc 2.16.0-1
/lib/libnss_dns-2.16.so is owned by glibc 2.16.0-1
/lib/libnss_dns.so.2 is owned by glibc 2.16.0-1
/lib/libmemusage.so is owned by glibc 2.16.0-1
/lib/libdl.so.2 is owned by glibc 2.16.0-1
/lib/libc-2.16.so is owned by glibc 2.16.0-1
/lib/libcrypt-2.16.so is owned by glibc 2.16.0-1
/lib/libnsl.so.1 is owned by glibc 2.16.0-1
/lib/libcrypt.so.1 is owned by glibc 2.16.0-1
/lib/libnss_nisplus-2.16.so is owned by glibc 2.16.0-1
/lib/librt.so.1 is owned by glibc 2.16.0-1
/lib/ld-2.16.so is owned by glibc 2.16.0-1
/lib/libthread_db.so.1 is owned by glibc 2.16.0-1
/lib/libSegFault.so is owned by glibc 2.16.0-1
/lib/libBrokenLocale-2.16.so is owned by glibc 2.16.0-1
/lib/libpthread-2.16.so is owned by glibc 2.16.0-1
/lib/libdl-2.16.so is owned by glibc 2.16.0-1
/lib/libnss_nis-2.16.so is owned by glibc 2.16.0-1
/lib/libnss_files.so.2 is owned by glibc 2.16.0-1

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Trilby

Inspector Parrot

Registered: 2011-11-29

Posts: 30,330

Website

Re: glibc update refusing to proceed. File ownership problem

scippio, that output doesn't show any problem.  That shows that everything is as it should be.  Do you get an error when you try to update?

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