Arch Linux

mvci

Member

Registered: 2014-10-15

Posts: 15

can't install kernel 4.0 because I deleted some files under /usr

Hi

I've deleted accidently files and folders under /usr
now I can't install the linux kernel 4.0
I got this error when I run (pacman -S linux linux-headers):

(3/3) checking keys in keyring                     [######################] 100%
(3/3) checking package integrity                   [######################] 100%
(3/3) loading package files                        [######################] 100%
(3/3) checking for file conflicts                  [######################] 100%
(3/3) checking available disk space                [######################] 100%
(1/3) upgrading linux-firmware                     [######################] 100%
(2/3) upgrading linux                              [######################] 100%
>>> Updating module dependencies. Please wait ...
depmod: ERROR: failed to load symbols from /lib/modules/4.0.1-1-ARCH/extramodules/vboxnetflt.ko.gz: Invalid argument
depmod: ERROR: failed to load symbols from /lib/modules/4.0.1-1-ARCH/extramodules/bbswitch.ko.gz: Invalid argument
depmod: ERROR: failed to load symbols from /lib/modules/4.0.1-1-ARCH/extramodules/vboxnetadp.ko.gz: Invalid argument
depmod: ERROR: failed to load symbols from /lib/modules/4.0.1-1-ARCH/extramodules/vboxpci.ko.gz: Invalid argument
depmod: ERROR: failed to load symbols from /lib/modules/4.0.1-1-ARCH/extramodules/vboxdrv.ko.gz: Invalid argument
>>> Generating initial ramdisk, using mkinitcpio.  Please wait...
==> Building image from preset: /etc/mkinitcpio.d/linux.preset: 'default'
  -> -k /boot/vmlinuz-linux -c /etc/mkinitcpio.conf -g /boot/initramfs-linux.img
==> Starting build: 4.0.1-1-ARCH
  -> Running build hook: [base]
  -> Running build hook: [udev]
  -> Running build hook: [autodetect]
  -> Running build hook: [modconf]
  -> Running build hook: [block]
  -> Running build hook: [keyboard]
  -> Running build hook: [keymap]
  -> Running build hook: [filesystems]
  -> Running build hook: [fsck]
==> Generating module dependencies
==> Creating gzip-compressed initcpio image: /boot/initramfs-linux.img
==> Image generation successful
==> Building image from preset: /etc/mkinitcpio.d/linux.preset: 'fallback'
  -> -k /boot/vmlinuz-linux -c /etc/mkinitcpio.conf -g /boot/initramfs-linux-fallback.img -S autodetect
==> Starting build: 4.0.1-1-ARCH
  -> Running build hook: [base]
  -> Running build hook: [udev]
  -> Running build hook: [modconf]
  -> Running build hook: [block]
==> WARNING: Possibly missing firmware for module: wd719x
==> WARNING: Possibly missing firmware for module: aic94xx
  -> Running build hook: [keyboard]
  -> Running build hook: [keymap]
  -> Running build hook: [filesystems]
  -> Running build hook: [fsck]
==> Generating module dependencies
==> Creating gzip-compressed initcpio image: /boot/initramfs-linux-fallback.img
==> Image generation successful
(3/3) upgrading linux-headers                      [######################] 100%
ldconfig: File /usr/lib/libplasmagenericshell.so is empty, not checked.
ldconfig: File /usr/lib/libksgrd.so.4 is empty, not checked.
ldconfig: File /usr/lib/libplasma-geolocation-interface.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libweather_ion.so.6 is empty, not checked.
ldconfig: File /usr/lib/libkwineffects.so is empty, not checked.
ldconfig: File /usr/lib/liboxygenstyle.so is empty, not checked.
ldconfig: File /usr/lib/libkdeinit4_dolphin.so is empty, not checked.
ldconfig: File /usr/lib/libkjsembed.so is empty, not checked.
ldconfig: File /usr/lib/libkidletime.so is empty, not checked.
ldconfig: File /usr/lib/libkdefakes.so is empty, not checked.
ldconfig: File /usr/lib/libkdefakes.so.5.14.7 is empty, not checked.
ldconfig: File /usr/lib/libpowerdevilconfigcommonprivate.so.4 is empty, not checked.
ldconfig: File /usr/lib/libkjs.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkwinglutils.so is empty, not checked.
ldconfig: File /usr/lib/libknewstuff2.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libknewstuff3.so.4 is empty, not checked.
ldconfig: File /usr/lib/libKF5KIOFileWidgets.so is empty, not checked.
ldconfig: File /usr/lib/libkworkspace.so is empty, not checked.
ldconfig: File /usr/lib/libsolid.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libplasma-geolocation-interface.so is empty, not checked.
ldconfig: File /usr/lib/libmlt++.so.0.9.6 is empty, not checked.
ldconfig: File /usr/lib/libplasma_applet-system-monitor.so is empty, not checked.
ldconfig: File /usr/lib/libkemoticons.so.4 is empty, not checked.
ldconfig: File /usr/lib/libkdeinit4_kcminit_startup.so is empty, not checked.
ldconfig: File /usr/lib/libKF5KIOCore.so is empty, not checked.
ldconfig: File /usr/lib/libkdeinit4_kio_http_cache_cleaner.so is empty, not checked.
ldconfig: File /usr/lib/libktexteditor.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkdecorations.so.4 is empty, not checked.
ldconfig: File /usr/lib/liboxygenstyleconfig.so is empty, not checked.
ldconfig: File /usr/lib/libkmediaplayer.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkdeui.so.5 is empty, not checked.
ldconfig: File /usr/lib/libKF5KIOWidgets.so.5 is empty, not checked.
ldconfig: File /usr/lib/libplasmaclock.so is empty, not checked.
ldconfig: File /usr/lib/libkprintutils.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libksignalplotter.so.4 is empty, not checked.
ldconfig: File /usr/lib/libkntlm.so.4 is empty, not checked.
ldconfig: File /usr/lib/libdolphinprivate.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libKF5KIOCore.so.5 is empty, not checked.
ldconfig: File /usr/lib/libkdefakes.so.5 is empty, not checked.
ldconfig: File /usr/lib/libknotifyconfig.so.4 is empty, not checked.
ldconfig: File /usr/lib/libKF5KIOWidgets.so is empty, not checked.
ldconfig: File /usr/lib/libkfile.so is empty, not checked.
ldconfig: File /usr/lib/libkjsembed.so.4 is empty, not checked.
ldconfig: File /usr/lib/libkdnssd.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkdeinit4_plasma-windowed.so is empty, not checked.
ldconfig: File /usr/lib/libkimproxy.so is empty, not checked.
ldconfig: File /usr/lib/libkcmutils.so is empty, not checked.
ldconfig: File /usr/lib/libksignalplotter.so is empty, not checked.
ldconfig: File /usr/lib/libksgrd.so is empty, not checked.
ldconfig: File /usr/lib/libkickoff.so is empty, not checked.
ldconfig: File /usr/lib/libplasma.so.3 is empty, not checked.
ldconfig: File /usr/lib/libksignalplotter.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkdeinit4_kwin.so is empty, not checked.
ldconfig: File /usr/lib/libkworkspace.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkparts.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkdeinit4_kbuildsycoca4.so is empty, not checked.
ldconfig: File /usr/lib/libkdeinit4_kconf_update.so is empty, not checked.
ldconfig: File /usr/lib/libkdnssd.so is empty, not checked.
ldconfig: File /usr/lib/libkdewebkit.so.5.14.7 is empty, not checked.
ldconfig: File /usr/lib/liblsofui.so is empty, not checked.
ldconfig: File /usr/lib/libkdnssd.so.4 is empty, not checked.
ldconfig: File /usr/lib/libkdeclarative.so.5.14.7 is empty, not checked.
ldconfig: File /usr/lib/libprocesscore.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libplasma_applet-system-monitor.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libKF5KIONTLM.so is empty, not checked.
ldconfig: File /usr/lib/libkrossui.so.4 is empty, not checked.
ldconfig: File /usr/lib/libmlt++.so is empty, not checked.
ldconfig: File /usr/lib/liboxygenstyleconfig.so.4 is empty, not checked.
ldconfig: File /usr/lib/libKF5KIOWidgets.so.5.9.0 is empty, not checked.
ldconfig: File /usr/lib/libkwinglutils.so.1.0.0 is empty, not checked.
ldconfig: File /usr/lib/libsolid.so is empty, not checked.
ldconfig: File /usr/lib/libplasmaclock.so.4 is empty, not checked.
ldconfig: File /usr/lib/libthreadweaver.so.4 is empty, not checked.
ldconfig: File /usr/lib/libkutils.so.4 is empty, not checked.
ldconfig: File /usr/lib/libkdeinit4_kmenuedit.so is empty, not checked.
ldconfig: File /usr/lib/libkrossui.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkutils.so is empty, not checked.
ldconfig: File /usr/lib/libkjs.so is empty, not checked.
ldconfig: File /usr/lib/liboxygenstyleconfig.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkfile.so.4 is empty, not checked.
ldconfig: File /usr/lib/libpowerdevilcore.so.0.1.0 is empty, not checked.
ldconfig: File /usr/lib/libkfontinstui.so.4 is empty, not checked.
ldconfig: File /usr/lib/libksgrd.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libplasma.so.3.0.0 is empty, not checked.
ldconfig: File /usr/lib/libkrossui.so is empty, not checked.
ldconfig: File /usr/lib/libtaskmanager.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libplasmagenericshell.so.4 is empty, not checked.
ldconfig: File /usr/lib/libkscreensaver.so.5.0.0 is empty, not checked.
ldconfig: File /usr/lib/libpowerdevilconfigcommonprivate.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkrosscore.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libknewstuff2.so.4 is empty, not checked.
ldconfig: File /usr/lib/libmlt.so.6 is empty, not checked.
ldconfig: File /usr/lib/libpowerdevilcore.so.0 is empty, not checked.
ldconfig: File /usr/lib/libKF5KIONTLM.so.5 is empty, not checked.
ldconfig: File /usr/lib/libknotifyconfig.so is empty, not checked.
ldconfig: File /usr/lib/libkdeinit4_kcminit.so is empty, not checked.
ldconfig: File /usr/lib/libprocessui.so.4 is empty, not checked.
ldconfig: File /usr/lib/liblsofui.so.4 is empty, not checked.
ldconfig: File /usr/lib/libkpty.so is empty, not checked.
ldconfig: File /usr/lib/libsystemsettingsview.so is empty, not checked.
ldconfig: File /usr/lib/libkfontinstui.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkonq.so is empty, not checked.
ldconfig: File /usr/lib/libkfontinst.so is empty, not checked.
ldconfig: File /usr/lib/libkrosscore.so is empty, not checked.
ldconfig: File /usr/lib/libthreadweaver.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkdeinit4_kwin_rules_dialog.so is empty, not checked.
ldconfig: File /usr/lib/libkcmutils.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkdecore.so.5.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkwinglesutils.so.1.0.0 is empty, not checked.
ldconfig: File /usr/lib/libplasmagenericshell.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkidletime.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkworkspace.so.4 is empty, not checked.
ldconfig: File /usr/lib/libkwineffects.so.1.0.0 is empty, not checked.
ldconfig: File /usr/lib/liboxygenstyle.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libweather_ion.so.6.0.0 is empty, not checked.
ldconfig: File /usr/lib/libktexteditor.so is empty, not checked.
ldconfig: File /usr/lib/libmlt++.so.3 is empty, not checked.
ldconfig: File /usr/lib/libkdeui.so is empty, not checked.
ldconfig: File /usr/lib/libkdewebkit.so.5 is empty, not checked.
ldconfig: File /usr/lib/libkrosscore.so.4 is empty, not checked.
ldconfig: File /usr/lib/libkdeinit4_plasma-desktop.so is empty, not checked.
ldconfig: File /usr/lib/libkde3support.so is empty, not checked.
ldconfig: File /usr/lib/libkhtml.so.5 is empty, not checked.
ldconfig: File /usr/lib/libkdecore.so is empty, not checked.
ldconfig: File /usr/lib/libkunitconversion.so.4 is empty, not checked.
ldconfig: File /usr/lib/libkunitconversion.so is empty, not checked.
ldconfig: File /usr/lib/libkjsapi.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libpowerdevilconfigcommonprivate.so is empty, not checked.
ldconfig: File /usr/lib/libkprintutils.so.4 is empty, not checked.
ldconfig: File /usr/lib/libknewstuff2.so is empty, not checked.
ldconfig: File /usr/lib/libkdeclarative.so is empty, not checked.
ldconfig: File /usr/lib/libkmediaplayer.so is empty, not checked.
ldconfig: File /usr/lib/libplasma_applet-system-monitor.so.4 is empty, not checked.
ldconfig: File /usr/lib/libKF5KIOCore.so.5.9.0 is empty, not checked.
ldconfig: File /usr/lib/libprocessui.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libknewstuff3.so is empty, not checked.
ldconfig: File /usr/lib/libkmediaplayer.so.4 is empty, not checked.
ldconfig: File /usr/lib/libkutils.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkunittest.so is empty, not checked.
ldconfig: File /usr/lib/libpowerdevilcore.so is empty, not checked.
ldconfig: File /usr/lib/libkephal.so.4 is empty, not checked.
ldconfig: File /usr/lib/libplasmaclock.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkunitconversion.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/liboxygenstyle.so.4 is empty, not checked.
ldconfig: File /usr/lib/libprocessui.so is empty, not checked.
ldconfig: File /usr/lib/libkunittest.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkonq.so.5 is empty, not checked.
ldconfig: File /usr/lib/libKF5KIOFileWidgets.so.5.9.0 is empty, not checked.
ldconfig: File /usr/lib/libkdecore.so.5 is empty, not checked.
ldconfig: File /usr/lib/libkjsapi.so.4 is empty, not checked.
ldconfig: File /usr/lib/libdolphinprivate.so.4 is empty, not checked.
ldconfig: File /usr/lib/libweather_ion.so is empty, not checked.
ldconfig: File /usr/lib/libkfile.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkdeinit4_klauncher.so is empty, not checked.
ldconfig: File /usr/lib/libkephal.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libplasma-geolocation-interface.so.4 is empty, not checked.
ldconfig: File /usr/lib/libkprintutils.so is empty, not checked.
ldconfig: File /usr/lib/libkntlm.so is empty, not checked.
ldconfig: File /usr/lib/libkemoticons.so is empty, not checked.
ldconfig: File /usr/lib/libkio.so.5.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkfontinst.so.4 is empty, not checked.
ldconfig: File /usr/lib/libktexteditor.so.4 is empty, not checked.
ldconfig: File /usr/lib/libkwineffects.so.1 is empty, not checked.
ldconfig: File /usr/lib/libkwinglesutils.so is empty, not checked.
ldconfig: File /usr/lib/libkscreensaver.so.5 is empty, not checked.
ldconfig: File /usr/lib/libKF5KIOFileWidgets.so.5 is empty, not checked.
ldconfig: File /usr/lib/libkscreensaver.so is empty, not checked.
ldconfig: File /usr/lib/libkfontinstui.so is empty, not checked.
ldconfig: File /usr/lib/libkjsembed.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkemoticons.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkhotkeysprivate.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libKF5KIONTLM.so.5.9.0 is empty, not checked.
ldconfig: File /usr/lib/libkde3support.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkhtml.so is empty, not checked.
ldconfig: File /usr/lib/libkunittest.so.4 is empty, not checked.
ldconfig: File /usr/lib/libkdeinit4_plasma-netbook.so is empty, not checked.
ldconfig: File /usr/lib/libthreadweaver.so is empty, not checked.
ldconfig: File /usr/lib/libkde3support.so.4 is empty, not checked.
ldconfig: File /usr/lib/libkimproxy.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libprocesscore.so.4 is empty, not checked.
ldconfig: File /usr/lib/libkdeinit4_kded4.so is empty, not checked.
ldconfig: File /usr/lib/libkwinglesutils.so.1 is empty, not checked.
ldconfig: File /usr/lib/libkdeinit4_ksysguard.so is empty, not checked.
ldconfig: File /usr/lib/libprocesscore.so is empty, not checked.
ldconfig: File /usr/lib/libkdeinit4_krunner.so is empty, not checked.
ldconfig: File /usr/lib/libkjs.so.4 is empty, not checked.
ldconfig: File /usr/lib/libknotifyconfig.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkcmutils.so.4 is empty, not checked.
ldconfig: File /usr/lib/libtaskmanager.so.4 is empty, not checked.
ldconfig: File /usr/lib/libkparts.so is empty, not checked.
ldconfig: File /usr/lib/libmlt.so.0.9.6 is empty, not checked.
ldconfig: File /usr/lib/libkpty.so.4 is empty, not checked.
ldconfig: File /usr/lib/libkdecorations.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkonq.so.5.14.7 is empty, not checked.
ldconfig: File /usr/lib/libpowerdevilui.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libplasma.so is empty, not checked.
ldconfig: File /usr/lib/libkdeinit4_kwin_gles.so is empty, not checked.
ldconfig: File /usr/lib/libkdeinit4_ksmserver.so is empty, not checked.
ldconfig: File /usr/lib/libpowerdevilui.so is empty, not checked.
ldconfig: File /usr/lib/libkdeinit4_klipper.so is empty, not checked.
ldconfig: File /usr/lib/libkdesu.so is empty, not checked.
ldconfig: File /usr/lib/libkhtml.so.5.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkhotkeysprivate.so.4 is empty, not checked.
ldconfig: File /usr/lib/libkjsapi.so is empty, not checked.
ldconfig: File /usr/lib/libkimproxy.so.4 is empty, not checked.
ldconfig: File /usr/lib/libkephal.so is empty, not checked.
ldconfig: File /usr/lib/libkwinglutils.so.1 is empty, not checked.
ldconfig: File /usr/lib/libknewstuff3.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libdolphinprivate.so is empty, not checked.
ldconfig: File /usr/lib/libkio.so is empty, not checked.
ldconfig: File /usr/lib/libpowerdevilui.so.4 is empty, not checked.
ldconfig: File /usr/lib/libkntlm.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkpty.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkdesu.so.5.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkdecorations.so is empty, not checked.
ldconfig: File /usr/lib/libtaskmanager.so is empty, not checked.
ldconfig: File /usr/lib/libkparts.so.4 is empty, not checked.
ldconfig: File /usr/lib/liblsofui.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkfontinst.so.4.14.7 is empty, not checked.
ldconfig: File /usr/lib/libsystemsettingsview.so.2 is empty, not checked.
ldconfig: File /usr/lib/libkdeclarative.so.5 is empty, not checked.
ldconfig: File /usr/lib/libkio.so.5 is empty, not checked.
ldconfig: File /usr/lib/libsolid.so.4 is empty, not checked.
ldconfig: File /usr/lib/libkdesu.so.5 is empty, not checked.
ldconfig: File /usr/lib/libkdewebkit.so is empty, not checked.
ldconfig: File /usr/lib/libkdeui.so.5.14.7 is empty, not checked.
ldconfig: File /usr/lib/libkidletime.so.4 is empty, not checked.
ldconfig: File /usr/lib/libmlt.so is empty, not checked.
ldconfig: File /usr/lib/libkdeinit4_kaccess.so is empty, not checked.

any help?

Moderator edit [ewaller] Added BBCode code tags around program output

Last edited by ewaller (2015-04-30 14:12:44)

Spider.007

Member

Registered: 2004-06-20

Posts: 1,175

Re: can't install kernel 4.0 because I deleted some files under /usr

That's not your only problem, I think quite some applications will have stopped working as well. I think you should reinstall all packages to get those files back.

pacman -S $(pacman -Qeq) --noconfirm

Last edited by Spider.007 (2015-04-30 13:01:50)

mvci

Member

Registered: 2014-10-15

Posts: 15

Re: can't install kernel 4.0 because I deleted some files under /usr

That's not your only problem, I think quite some applications will have stopped working as well. I think you should reinstall all packages to get those files back.

pacman -S $(pacman -Qeq) --noconfirm

What about AUR packages? does there any way to reinstall all of them together?

karol

Archivist

Registered: 2009-05-06

Posts: 25,440

Re: can't install kernel 4.0 because I deleted some files under /usr

There are some bug reports, e.g. https://bugs.archlinux.org/task/44784

tomk

Forum Fellow

From: Ireland

Registered: 2004-07-21

Posts: 9,839

Re: can't install kernel 4.0 because I deleted some files under /usr

You don't need to reinstall all packages, just the ones with missing files - look for the -k/--check flag in pacman(8).

Spider.007

Member

Registered: 2004-06-20

Posts: 1,175

Re: can't install kernel 4.0 because I deleted some files under /usr

Of the 771 packages I have installed, 7 have no files in /usr. If you don't know what files you deleted I'd reinstall all packages as pacman-Qkk will be an (virtually) endless list