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#1 2018-06-02 13:18:14
- nullgeppetto
- Member
- Registered: 2015-09-23
- Posts: 26
Pacman upgrade error due to python packages and pip?
I had a problem upgrading my Arch systems and apparently this is due to python and pip. This is an issue that confuses me, so I write this question for both getting help resolving it, but also for getting things clear and not making the same mistakes again. Thanks in advance for taking a look at what follows.
`sudo pacman -Syu` gives the following error:
error: failed to commit transaction (conflicting files)
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/__init__.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/__pycache__/__init__.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/__pycache__/_collections.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/__pycache__/connection.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/__pycache__/connectionpool.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/__pycache__/exceptions.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/__pycache__/fields.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/__pycache__/filepost.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/__pycache__/poolmanager.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/__pycache__/request.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/__pycache__/response.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/_collections.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/connection.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/connectionpool.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/contrib/__init__.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/contrib/__pycache__/__init__.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/contrib/__pycache__/appengine.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/contrib/__pycache__/ntlmpool.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/contrib/__pycache__/pyopenssl.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/contrib/__pycache__/securetransport.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/contrib/__pycache__/socks.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/contrib/_securetransport/__init__.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/contrib/_securetransport/__pycache__/__init__.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/contrib/_securetransport/__pycache__/bindings.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/contrib/_securetransport/__pycache__/low_level.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/contrib/_securetransport/bindings.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/contrib/_securetransport/low_level.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/contrib/appengine.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/contrib/ntlmpool.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/contrib/pyopenssl.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/contrib/securetransport.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/contrib/socks.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/exceptions.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/fields.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/filepost.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/packages/__init__.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/packages/__pycache__/__init__.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/packages/__pycache__/ordered_dict.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/packages/__pycache__/six.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/packages/backports/__init__.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/packages/backports/__pycache__/__init__.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/packages/backports/__pycache__/makefile.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/packages/backports/makefile.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/packages/ordered_dict.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/packages/six.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/packages/ssl_match_hostname/__init__.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/packages/ssl_match_hostname/__pycache__/__init__.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/packages/ssl_match_hostname/__pycache__/_implementation.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/packages/ssl_match_hostname/_implementation.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/poolmanager.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/request.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/response.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/util/__init__.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/util/__pycache__/__init__.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/util/__pycache__/connection.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/util/__pycache__/request.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/util/__pycache__/response.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/util/__pycache__/retry.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/util/__pycache__/selectors.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/util/__pycache__/ssl_.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/util/__pycache__/timeout.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/util/__pycache__/url.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/util/__pycache__/wait.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/util/connection.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/util/request.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/util/response.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/util/retry.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/util/selectors.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/util/ssl_.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/util/timeout.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/util/url.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/util/wait.py exists in filesystem
python-chardet: /usr/bin/chardetect exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/__init__.py exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/__pycache__/__init__.cpython-36.pyc exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/__pycache__/big5freq.cpython-36.pyc exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/__pycache__/big5prober.cpython-36.pyc exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/__pycache__/chardistribution.cpython-36.pyc exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/__pycache__/charsetgroupprober.cpython-36.pyc exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/__pycache__/charsetprober.cpython-36.pyc exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/__pycache__/codingstatemachine.cpython-36.pyc exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/__pycache__/compat.cpython-36.pyc exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/__pycache__/cp949prober.cpython-36.pyc exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/__pycache__/enums.cpython-36.pyc exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/__pycache__/escprober.cpython-36.pyc exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/__pycache__/escsm.cpython-36.pyc exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/__pycache__/eucjpprober.cpython-36.pyc exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/__pycache__/euckrfreq.cpython-36.pyc exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/__pycache__/euckrprober.cpython-36.pyc exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/__pycache__/euctwfreq.cpython-36.pyc exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/__pycache__/euctwprober.cpython-36.pyc exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/__pycache__/gb2312freq.cpython-36.pyc exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/__pycache__/gb2312prober.cpython-36.pyc exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/__pycache__/hebrewprober.cpython-36.pyc exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/__pycache__/jisfreq.cpython-36.pyc exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/__pycache__/jpcntx.cpython-36.pyc exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/__pycache__/langbulgarianmodel.cpython-36.pyc exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/__pycache__/langcyrillicmodel.cpython-36.pyc exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/__pycache__/langgreekmodel.cpython-36.pyc exists in filesystem
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python-chardet: /usr/lib/python3.6/site-packages/chardet/__pycache__/langturkishmodel.cpython-36.pyc exists in filesystem
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python-chardet: /usr/lib/python3.6/site-packages/chardet/__pycache__/sbcharsetprober.cpython-36.pyc exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/__pycache__/sbcsgroupprober.cpython-36.pyc exists in filesystem
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python-chardet: /usr/lib/python3.6/site-packages/chardet/__pycache__/utf8prober.cpython-36.pyc exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/__pycache__/version.cpython-36.pyc exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/big5freq.py exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/big5prober.py exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/chardistribution.py exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/charsetgroupprober.py exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/charsetprober.py exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/cli/__init__.py exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/cli/__pycache__/__init__.cpython-36.pyc exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/cli/__pycache__/chardetect.cpython-36.pyc exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/cli/chardetect.py exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/codingstatemachine.py exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/compat.py exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/cp949prober.py exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/enums.py exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/escprober.py exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/escsm.py exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/eucjpprober.py exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/euckrfreq.py exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/euckrprober.py exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/euctwfreq.py exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/euctwprober.py exists in filesystem
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python-chardet: /usr/lib/python3.6/site-packages/chardet/hebrewprober.py exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/jisfreq.py exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/jpcntx.py exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/langbulgarianmodel.py exists in filesystem
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python-chardet: /usr/lib/python3.6/site-packages/chardet/langgreekmodel.py exists in filesystem
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python-chardet: /usr/lib/python3.6/site-packages/chardet/langhungarianmodel.py exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/langthaimodel.py exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/langturkishmodel.py exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/latin1prober.py exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/mbcharsetprober.py exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/mbcsgroupprober.py exists in filesystem
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python-chardet: /usr/lib/python3.6/site-packages/chardet/sjisprober.py exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/universaldetector.py exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/utf8prober.py exists in filesystem
python-chardet: /usr/lib/python3.6/site-packages/chardet/version.py exists in filesystem
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python-requests: /usr/lib/python3.6/site-packages/requests/__pycache__/api.cpython-36.pyc exists in filesystem
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python-requests: /usr/lib/python3.6/site-packages/requests/__version__.py exists in filesystem
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python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/baseparser.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/build_env.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/build_env.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/cache.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/cache.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/cmdoptions.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/cmdoptions.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/commands/__init__.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/commands/__init__.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/commands/check.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/commands/check.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/commands/completion.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/commands/completion.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/commands/configuration.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/commands/configuration.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/commands/download.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/commands/download.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/commands/freeze.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/commands/freeze.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/commands/hash.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/commands/hash.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/commands/help.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/commands/help.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/commands/install.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/commands/install.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/commands/list.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/commands/list.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/commands/search.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/commands/search.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/commands/show.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/commands/show.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/commands/uninstall.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/commands/uninstall.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/commands/wheel.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/commands/wheel.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/compat.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/compat.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/configuration.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/configuration.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/download.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/download.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/exceptions.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/exceptions.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/index.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/index.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/locations.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/locations.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/models/__init__.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/models/__init__.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/models/index.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/models/index.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/operations/__init__.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/operations/__init__.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/operations/check.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/operations/check.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/operations/freeze.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/operations/freeze.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/operations/prepare.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/operations/prepare.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/pep425tags.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/pep425tags.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/req/__init__.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/req/__init__.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/req/req_file.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/req/req_file.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/req/req_install.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/req/req_install.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/req/req_set.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/req/req_set.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/req/req_uninstall.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/req/req_uninstall.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/resolve.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/resolve.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/status_codes.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/status_codes.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/utils/__init__.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/utils/__init__.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/utils/appdirs.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/utils/appdirs.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/utils/deprecation.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/utils/deprecation.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/utils/encoding.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/utils/encoding.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/utils/filesystem.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/utils/filesystem.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/utils/glibc.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/utils/glibc.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/utils/hashes.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/utils/hashes.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/utils/logging.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/utils/logging.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/utils/misc.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/utils/misc.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/utils/outdated.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/utils/outdated.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/utils/packaging.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/utils/packaging.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/utils/setuptools_build.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/utils/setuptools_build.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/utils/temp_dir.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/utils/temp_dir.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/utils/typing.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/utils/typing.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/utils/ui.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/utils/ui.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/vcs/__init__.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/vcs/__init__.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/vcs/bazaar.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/vcs/bazaar.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/vcs/git.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/vcs/git.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/vcs/mercurial.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/vcs/mercurial.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/vcs/subversion.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/vcs/subversion.pyc exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/wheel.py exists in filesystem
python2-pip: /usr/lib/python2.7/site-packages/pip/_internal/wheel.pyc exists in filesystem
Errors occurred, no packages were upgraded.I suspect that this is because I have installed with `pacman` something that I had already installed with `pip` (or vice versa). Might this be correct? This is what `pip list` gives:
Package Version
---------------------------------- -----------
appdirs 1.4.3
backports-abc 0.5
backports.functools-lru-cache 1.5
backports.shutil-get-terminal-size 1.0.0
bcrypt 3.1.4
bleach 2.1.3
cffi 1.11.5
configparser 3.5.0
cycler 0.10.0
decorator 4.2.1
entrypoints 0.2.3
enum34 1.1.6
functools32 3.2.3.post2
futures 3.2.0
html5lib 1.0.1
ipykernel 4.8.2
ipython 5.6.0
ipython-genutils 0.2.0
ipywidgets 7.2.1
Jinja2 2.10
jsonschema 2.6.0
jupyter 1.0.0
jupyter-client 5.2.3
jupyter-console 5.2.0
jupyter-core 4.4.0
kiwisolver 1.0.1
louis 3.5.0
lxml 4.2.1
MarkupSafe 1.0
matplotlib 2.2.2
mistune 0.8.3
nbconvert 5.3.1
nbformat 4.4.0
netsnmp-python 1.0a1
notebook 5.5.0
numpy 1.14.2
packaging 17.1
pandocfilters 1.4.2
pathlib2 2.3.0
pexpect 4.4.0
pickleshare 0.7.4
pip 10.0.1
ply 3.11
progress 1.3
prompt-toolkit 1.0.15
ptyprocess 0.5.2
pwquality 1.4.0
pycairo 1.17.0
pycparser 2.18
Pygments 2.2.0
pygobject 3.28.3
pyinotify 0.9.6
pyparsing 2.2.0
python-dateutil 2.7.3
pytz 2018.4
pyzmq 17.0.0
qtconsole 4.3.1
rdiff-backup 1.2.8
scandir 1.7
Send2Trash 1.5.0
setuptools 39.2.0
simplegeneric 0.8.1
singledispatch 3.4.0.3
six 1.11.0
subprocess32 3.5.1
team 1.0
terminado 0.8.1
testpath 0.3.1
torch 0.4.0
tornado 5.0.2
tqdm 4.21.0
traitlets 4.3.2
wcwidth 0.1.7
webencodings 0.5.1
widgetsnbextension 3.2.1"I never expected hell to have so much light." -- Miltos Sachtouris
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#2 2018-06-02 14:14:55
- ewaller
- Administrator
- From: Pasadena, CA
- Registered: 2009-07-13
- Posts: 20,193
Re: Pacman upgrade error due to python packages and pip?
In general, you should use pacman for all system wide files in the file system. Running pip and installing packages system-wide will, invariably, lead to the issues you have discovered. If you must use pip, for example because a piece of python code requires an explicit version of a library, then use pip in --user mode and use a virtual environment
https://wiki.archlinux.org/index.php/py … management
https://wiki.archlinux.org/index.php/Py … nvironment
Nothing is too wonderful to be true, if it be consistent with the laws of nature -- Michael Faraday
Sometimes it is the people no one can imagine anything of who do the things no one can imagine. -- Alan Turing
---
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#3 2018-06-02 14:36:12
- nullgeppetto
- Member
- Registered: 2015-09-23
- Posts: 26
Re: Pacman upgrade error due to python packages and pip?
Thank you for your response.
I see. In general, for very popular python packages (e.g., numpy, scipy, etc), does pacman provide the latest versions, or is pip more appropriate for that purpose?
For the specific problem that I encounter, what would you suggest? Uninstalling (via pip) almost everything and re-installing via pacman?
Thank you very much.
"I never expected hell to have so much light." -- Miltos Sachtouris
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#4 2018-06-02 14:43:50
- ewaller
- Administrator
- From: Pasadena, CA
- Registered: 2009-07-13
- Posts: 20,193
Re: Pacman upgrade error due to python packages and pip?
In general, pacman provides the latest and greatest, but they may not migrate to the general-purpose repositories until testing and compatibility issues with other packages are all worked out.
For your specific case, were it my system, I would use pacman with the --overwrite flag.
Nothing is too wonderful to be true, if it be consistent with the laws of nature -- Michael Faraday
Sometimes it is the people no one can imagine anything of who do the things no one can imagine. -- Alan Turing
---
How to Ask Questions the Smart Way
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#5 2018-06-02 15:01:49
- Trilby
- Inspector Parrot
- Registered: 2011-11-29
- Posts: 30,330
- Website
Re: Pacman upgrade error due to python packages and pip?
You can readily check what version of things like python-numpy are in the repos. As noted above, arch is a rolling release, and will most likely have updates to these python packages long before other distros - but it is not instantaneous. But neither is it instantaneous if you use pip: you may get the most recent version from pypi when you install something, but how often do you update your pip packages? Do you keep track of upstream changes in your python packages? I don't. I like the fact that there are a team of developers and packagers who keep track of upstream changes and add them to the repos when they are ready.
Of course anything that is from the AUR works more like pip: it's up to you to update those. But this also highlights why I think it's so silly to use pip in arch. Anything you can install with pip is trivially easy to write a PKGBUILD for.
Last edited by Trilby (2018-06-02 15:03:14)
"UNIX is simple and coherent" - Dennis Ritchie; "GNU's Not Unix" - Richard Stallman
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#6 2018-06-02 15:07:13
- nullgeppetto
- Member
- Registered: 2015-09-23
- Posts: 26
Re: Pacman upgrade error due to python packages and pip?
ewaller wrote:
In general, pacman provides the latest and greatest, but they may not migrate to the general-purpose repositories until testing and compatibility issues with other packages are all worked out.
For your specific case, were it my system, I would use pacman with the --overwrite flag.
Trilby wrote:
You can readily check what version of things like python-numpy are in the repos. As noted above, arch is a rolling release, and will most likely have updates to these python packages long before other distros - but it is not instantaneous. But neither is it instantaneous if you use pip: you may get the most recent version from pypi when you install something, but how often do you update your pip packages? Do you keep track of upstream changes in your python packages? I don't. I like the fact that there are a team of developers and packagers who keep track of upstream changes and add them to the repos when they are ready.
Of course anything that is from the AUR works more like pip: it's up to you to update those. But this also highlights why I think it's so silly to use pip in arch. Anything you can install with pip is trivially easy to write a PKGBUILD for.
Thank you both for your answers, you made things crystal clear.
"I never expected hell to have so much light." -- Miltos Sachtouris
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#7 2018-06-03 14:21:59
- massimilianonball
- Member
- Registered: 2018-03-29
- Posts: 3
Re: Pacman upgrade error due to python packages and pip?
I think that i have a similar problem:
[massimiliano@massylinux ~]$ sudo pacman -Syyu
:: Synchronizing package databases...
core 129,8 KiB 368K/s 00:00 [##################################################################] 100%
extra 1619,5 KiB 799K/s 00:02 [##################################################################] 100%
community 4,4 MiB 707K/s 00:06 [##################################################################] 100%
multilib 170,4 KiB 416K/s 00:00 [##################################################################] 100%
archlinuxfr 11,5 KiB 1152K/s 00:00 [##################################################################] 100%
:: Starting full system upgrade...
:: Replace pkg-config with core/pkgconf? [Y/n] y
resolving dependencies...
looking for conflicting packages...
Packages (95) arm-none-eabi-newlib-3.0.0.20180226-2 automoc4-0.9.88-9 boost-1.66.0-3 boost-libs-1.66.0-3 cairo-dock-3.4.1-3 cmake-3.11.3-1 convertlit-1.8-8 dkms-2.5-3
dotconf-1.3-5 flickcurl-1.26-3 gamin-0.1.10-9 ilmbase-2.2.1-3 imagemagick-7.0.7.37-1 jfsutils-1.1.15-5 lib32-librsvg-2.42.5-1 lib32-libxcomposite-0.4.4-3
lib32-libxdmcp-1.1.2-2 lib32-libxext-1.3.3-2 lib32-libxft-2.3.2-2 lib32-libxxf86vm-1.1.4-2 lib32-p11-kit-0.23.11-1 libbsd-0.9.1-1 libdaemon-0.14-4
libgssglue-0.4-3 libiec61883-1.2.0-5 libieee1284-0.2.11-7 liblqr-0.4.2-2 libmagick-7.0.7.37-1 libmagick6-6.9.9.49-1 libmm-glib-1.8.0-1 libmp4v2-2.0.0-5
libpgm-5.2.122-3 librsvg-2:2.42.5-1 libspiro-1:0.5.20150702-2 libtiger-0.3.4-5 libusb-compat-0.1.5-2 libxinerama-1.1.3-3 libxkbfile-1.0.9-2 libxkbui-1.0.2-6
libxmu-1.1.2-2 libxss-1.2.2-3 libxt-1.1.5-2 libxxf86dga-1.1.4-2 libxxf86vm-1.1.4-2 linux-4.16.13-1 linux-headers-4.16.13-1 modemmanager-1.8.0-1 p11-kit-0.23.12-1
pacman-5.1.0-2 pkg-config-0.29.2-1 [removal] pkgconf-1.4.2-2 pygobject-devel-3.28.3-1 python-cachecontrol-0.12.4-1 python-chardet-3.0.4-1 python-colorama-0.3.9-1
python-distlib-0.2.7-1 python-distro-1.3.0-1 python-gobject-3.28.3-1 python-html5lib-1.0.1-2 python-idna-2.6-1 python-lockfile-0.12.2-2 python-msgpack-0.5.6-1
python-pip-10.0.1-1 python-progress-1.3-2 python-pytoml-0.1.15-1 python-requests-2.18.4-1 python-retrying-1.3.3-3 python-urllib3-1.22-1 python-webencodings-0.5.1-1
python2-gobject-3.28.3-1 run-parts-4.8.6-1 schroedinger-1.0.11-4 telepathy-accounts-signon-1.0-2 telepathy-glib-0.24.1-2 ttf-freefont-20120503-5 vid.stab-1.1-2
wvdial-1.61-7 xorg-font-util-1.3.1-2 xorg-font-utils-7.6-5 xorg-fonts-alias-1.0.3-2 xorg-fonts-encodings-1.0.4-5 xorg-luit-1.1.1-3 xorg-server-1.20.0-5
xorg-server-common-1.20.0-5 xorg-server-devel-1.20.0-5 xorg-setxkbmap-1.3.1-2 xorg-xclock-1.0.7-2 xorg-xcmsdb-1.0.5-2 xorg-xdpyinfo-1.3.2-2 xorg-xgamma-1.0.6-2
xorg-xhost-1.0.7-2 xorg-xinput-1.6.2-2 xorg-xmodmap-1.0.9-2 zip-3.0-8 zvbi-0.2.35-2
Total Installed Size: 524,61 MiB
Net Upgrade Size: 4,24 MiB
:: Proceed with installation? [Y/n] y
(94/94) checking keys in keyring [##################################################################] 100%
(94/94) checking package integrity [##################################################################] 100%
(94/94) loading package files [##################################################################] 100%
(94/94) checking for file conflicts [##################################################################] 100%
error: failed to commit transaction (conflicting files)
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/__init__.py exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/__pycache__/__init__.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/__pycache__/_collections.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/__pycache__/connection.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/__pycache__/connectionpool.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/__pycache__/exceptions.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/__pycache__/fields.cpython-36.pyc exists in filesystem
python-urllib3: /usr/lib/python3.6/site-packages/urllib3/__pycache__/filepost.cpython-36.pyc exists in filesystem
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python-pip: /usr/lib/python3.6/site-packages/pip/_internal/__pycache__/locations.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/__pycache__/pep425tags.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/__pycache__/resolve.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/__pycache__/status_codes.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/__pycache__/wheel.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/basecommand.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/baseparser.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/build_env.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/cache.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/cmdoptions.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/commands/__init__.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/commands/__pycache__/__init__.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/commands/__pycache__/check.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/commands/__pycache__/completion.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/commands/__pycache__/configuration.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/commands/__pycache__/download.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/commands/__pycache__/freeze.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/commands/__pycache__/hash.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/commands/__pycache__/help.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/commands/__pycache__/install.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/commands/__pycache__/list.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/commands/__pycache__/search.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/commands/__pycache__/show.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/commands/__pycache__/uninstall.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/commands/__pycache__/wheel.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/commands/check.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/commands/completion.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/commands/configuration.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/commands/download.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/commands/freeze.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/commands/hash.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/commands/help.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/commands/install.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/commands/list.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/commands/search.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/commands/show.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/commands/uninstall.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/commands/wheel.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/compat.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/configuration.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/download.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/exceptions.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/index.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/locations.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/models/__init__.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/models/__pycache__/__init__.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/models/__pycache__/index.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/models/index.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/operations/__init__.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/operations/__pycache__/__init__.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/operations/__pycache__/check.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/operations/__pycache__/freeze.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/operations/__pycache__/prepare.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/operations/check.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/operations/freeze.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/operations/prepare.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/pep425tags.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/req/__init__.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/req/__pycache__/__init__.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/req/__pycache__/req_file.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/req/__pycache__/req_install.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/req/__pycache__/req_set.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/req/__pycache__/req_uninstall.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/req/req_file.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/req/req_install.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/req/req_set.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/req/req_uninstall.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/resolve.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/status_codes.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/utils/__init__.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/utils/__pycache__/__init__.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/utils/__pycache__/appdirs.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/utils/__pycache__/deprecation.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/utils/__pycache__/encoding.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/utils/__pycache__/filesystem.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/utils/__pycache__/glibc.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/utils/__pycache__/hashes.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/utils/__pycache__/logging.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/utils/__pycache__/misc.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/utils/__pycache__/outdated.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/utils/__pycache__/packaging.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/utils/__pycache__/setuptools_build.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/utils/__pycache__/temp_dir.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/utils/__pycache__/typing.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/utils/__pycache__/ui.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/utils/appdirs.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/utils/deprecation.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/utils/encoding.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/utils/filesystem.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/utils/glibc.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/utils/hashes.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/utils/logging.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/utils/misc.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/utils/outdated.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/utils/packaging.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/utils/setuptools_build.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/utils/temp_dir.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/utils/typing.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/utils/ui.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/vcs/__init__.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/vcs/__pycache__/__init__.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/vcs/__pycache__/bazaar.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/vcs/__pycache__/git.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/vcs/__pycache__/mercurial.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/vcs/__pycache__/subversion.cpython-36.pyc exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/vcs/bazaar.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/vcs/git.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/vcs/mercurial.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/vcs/subversion.py exists in filesystem
python-pip: /usr/lib/python3.6/site-packages/pip/_internal/wheel.py exists in filesystem
Errors occurred, no packages were upgraded...and this is the list of the pip packeges:
pip list
+Package Version
----------------- ---------
anytree 2.4.3
appdirs 1.4.3
Archey3 0.4
astroid 1.6.1
Beaker 1.9.1
btrfsutil 1.0.0
CDApplet 1.0
CDBashApplet 1.0
certifi 2018.1.18
chardet 3.0.4
cvxopt 1.2.0
cycler 0.10.0
idna 2.6
isort 4.2.15
kiwisolver 1.0.1
lazy-object-proxy 1.3.1
lensfun 0.3.2
louis 3.5.0
lxml 4.2.1
Mako 1.0.7
MarkupSafe 1.0
matplotlib 2.2.2
mccabe 0.6.1
numpy 1.14.3
packaging 17.1
pexpect 4.5.0
pip 10.0.1
ptyprocess 0.5.2
Pygments 2.2.0
pygobject 3.28.2
pylint 1.8.2
pyparsing 2.2.0
pytz 2018.4
pyxdg 0.26
requests 2.18.4
rope 0.10.7
scipy 1.0.1
setuptools 39.2.0
six 1.11.0
team 1.0
urllib3 1.22
wrapt 1.10.11
xmltodict 0.11.0
youtube-dl 2018.5.18Should i use the overwrite flag?
Many thanks!!
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#8 2018-06-03 14:47:21
- massimilianonball
- Member
- Registered: 2018-03-29
- Posts: 3
Re: Pacman upgrade error due to python packages and pip?
EDIT: SOLVED
I've removed some packages with pip, then i've upgrade the system with pacman and than i've installed with pacman the removed packages.
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#9 2018-06-03 16:27:06
- eschwartz
- Fellow
- Registered: 2014-08-08
- Posts: 4,097
Re: Pacman upgrade error due to python packages and pip?
I'll notice that some of these errors were for pip itself -- so I suspect that lots of people have been installing pip with pacman, then running pip install --upgrade pip to get the 10.x release. Now that Arch has finally updated our pip package (it was a bit fiddly due to things like https://bugs.archlinux.org/task/58670 and previously trying to figure out https://bugs.archlinux.org/task/40713) everyone who messed with pacman is getting issues with smoothly upgrading...
I suspect this is somehow also the cause of https://bugs.archlinux.org/task/58849 but I'm not sure how.
Managing AUR repos The Right Way -- aurpublish (now a standalone tool)
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#10 2018-06-03 20:21:25
- ivladak
- Member
- Registered: 2018-06-03
- Posts: 2
Re: Pacman upgrade error due to python packages and pip?
Eschwartz wrote:
I'll notice that some of these errors were for pip itself -- so I suspect that lots of people have been installing pip with pacman, then running pip install --upgrade pip to get the 10.x release. Now that Arch has finally updated our pip package (it was a bit fiddly due to things like https://bugs.archlinux.org/task/58670 and previously trying to figure out https://bugs.archlinux.org/task/40713) everyone who messed with pacman is getting issues with smoothly upgrading...
I suspect this is somehow also the cause of https://bugs.archlinux.org/task/58849 but I'm not sure how.
Thank you, Eli!
I believe I was having the same problem as the OP.
I indeed ran
pip install --upgrade pipsome time ago so I guess what happened was pip updated itself and since then its files were not owned by the pacman python-pip package anymore (mb because pip changed their location -- not sure why that happened).
The https://bugs.archlinux.org/task/58849 link helped. I ended up removing /usr/lib/python3.6/site-packages/pip directory and doing an upgrade.
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#11 2020-09-28 20:19:20
- moodi_jii
- Member
- Registered: 2020-09-28
- Posts: 2
Re: Pacman upgrade error due to python packages and pip?
A good way I found to resolve conflicts with pip when updating your system or python packages with pacman, is to delete the pip packages.
Let's say you have this conflicting file:
"python-pygments: /usr/lib/python3.8/site-packages/pygments/styles/algol_nu.py exists in filesystem"
This already tells you the name of the package "python-pygments" or if it doesn't you can deduce it by the path "/usr:lib/python3.8/site-packages/..."
Then manually delete the package with pip
pip uninstall pygments
Note: Some packages start with "python-" in pip
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#12 2020-09-28 20:44:52
- ewaller
- Administrator
- From: Pasadena, CA
- Registered: 2009-07-13
- Posts: 20,193
Re: Pacman upgrade error due to python packages and pip?
Closing this old thread
Nothing is too wonderful to be true, if it be consistent with the laws of nature -- Michael Faraday
Sometimes it is the people no one can imagine anything of who do the things no one can imagine. -- Alan Turing
---
How to Ask Questions the Smart Way
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Topic closed