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- Topics: Active | Unanswered
#1 2022-10-10 00:23:24
- slimprize
- Member
- Registered: 2022-02-13
- Posts: 12
Unable to upgrade due to conflicting files
Hi all,
I usually run yay -Syu to upgrade my arch installation. However, for the past week, I have been getting an error where a number of preexisting files under python site-packages exist and the upgrade fails due to file conflicts. Here is the complete log. How do I correct this problem?
:: Synchronizing package databases...
core downloading...
extra downloading...
community downloading...
:: Starting full system upgrade...
there is nothing to do
:: [1mSearching databases for updates...[0m
:: [1mSearching AUR for updates...[0m
:: [1mChecking development packages...[0m
-> Missing AUR Packages: nrich
-> Orphaned AUR Packages: mate-tweak
-> Flagged Out Of Date AUR Packages: artwiz-fonts ceph-libs mate-tweak
:: 2 Packages to upgrade.
2 aur/ceph-libs 15.2.17-1 -> 16.2.7-1
1 devel/onnxruntime-git orttraining_rc2.r4488.g63c3b21902-1 -> latest-commit
==> Packages to exclude: (eg: "1 2 3", "1-3", "^4" or repo name)
==> :: [1mThere are 4 providers available for java-environment:
:: [1mRepository extra
[0m1) jdk-openjdk 2) jdk11-openjdk 3) jdk17-openjdk 4) jdk8-openjdk [0m
Enter a number (default=1):
==> :: [1mChecking for conflicts...[0m
:: [1mChecking for inner conflicts...[0m
[Repo:4] librdkafka-1.9.2-1 python-wcwidth-0.2.5-6 python-prettytable-3.4.1-1 python-yaml-6.0-1
[Repo Make:125] boost-1.80.0-2 c-ares-1.18.1-1 nodejs-18.10.0-1 coffeescript-2.7.0-1 cpio-2.13-2 crypto++-8.7.0-1 cunit-2.1.3-3 fcgi-2.4.2-2 gtest-1.12.1-1 gperf-3.1-3 gperftools-2.10-1 inetutils-2.3-1 java-runtime-common-3-3 libnet-1:1.1.6-1 jre-openjdk-headless-18.0.2.1.u0-1 jre-openjdk-18.0.2.1.u0-1 oniguruma-6.9.8-1 jq-1.6-4 jre11-openjdk-headless-11.0.16.1.u1-2 java-environment-common-3-3 jdk-openjdk-18.0.2.1.u0-1 java-hamcrest-1.3-5 junit-4.13.2-1 leveldb-1.23-3 libatomic_ops-7.6.14-1 libcurl-compat-7.85.0-2 librabbitmq-c-0.11.0-1 lsb-release-2.0.r48.3cf5103-1 protobuf-21.7-1 python-lazy-object-proxy-1.7.1-1 python-wrapt-1.14.1-1 python-astroid-2.12.10-1 python-attrs-22.1.0-1 python-bcrypt-4.0.0-1 python-cheroot-8.6.0-2 python-pytz-2022.1-1 python-tempora-5.0.2-1 python-portend-3.1.0-1 python-jaraco.classes-3.2.3-1 python-jaraco.collections-3.5.1-3 python-zc.lockfile-2.0-8 python-cherrypy-18.8.0-1 python-coverage-6.2-1 python-dateutil-2.8.2-4 python-elasticsearch-7.9.0-1 python-markupsafe-2.1.1-1 python-werkzeug-2.2.2-1 python-jinja-1:3.1.2-2 python-itsdangerous-2.1.2-2 python-click-8.1.3-1 python-flask-2.2.2-1 python-aniso8601-9.0.1-3 python-flask-restful-0.3.9-3 python-cachetools-5.2.0-1 python-pyasn1-0.4.8-7 python-pyasn1-modules-0.2.8-6 python-rsa-4.9-1 python-google-auth-2.3.2-1 python-httplib2-0.20.4-1 python-google-auth-httplib2-0.1.0-3 python-uritemplate-4.1.1-1 python-protobuf-21.7-1 python-googleapis-common-protos-1.56.4-1 python-google-api-core-2.10.0-1 python-google-api-python-client-2.60.0-1 abseil-cpp-20220623.1-1 python-grpcio-1.48.0-1 python-isort-5.10.1-5 python-mccabe-0.7.0-1 python-isodate-0.6.1-1 python-defusedxml-0.7.1-4 python-pkgconfig-1.5.5-3 python-lxml-4.9.1-1 python-xmlsec-1.3.13-1 python-pbr-5.10.0-1 python-webob-1.8.7-4 python-mako-1.2.3-1 python-soupsieve-2.3.2.post1-1 python-beautifulsoup4-4.11.1-1 python-waitress-2.1.2-1 python-webtest-3.0.0-3 python-logutils-0.3.5-10 python-pecan-1.4.2-1 python-pluggy-1.0.0-1 python-prometheus_client-0.14.1-1 python-iniconfig-1.1.1-5 python-apipkg-3.0.1-1 python-py-1.11.0-1 python-pyjwt-2.5.0-1 python-repoze.lru-0.7-8 python-routes-2.5.1-5 python-joblib-1.2.0-1 python-threadpoolctl-3.1.0-1 python-scikit-learn-1.1.2-1 python-babel-2.10.3-1 python-imagesize-1.4.1-2 python-snowballstemmer-2.2.0-3 python-sphinx-alabaster-theme-0.7.12-9 python-sphinxcontrib-applehelp-1.0.2-9 python-sphinxcontrib-devhelp-1.0.2-9 python-sphinxcontrib-htmlhelp-2.0.0-5 python-sphinxcontrib-jsmath-1.0.1-12 python-sphinxcontrib-qthelp-1.0.3-9 python-sphinxcontrib-serializinghtml-1.1.5-4 python-sphinx-5.2.3-1 python-filelock-3.8.0-1 python-virtualenv-20.16.1-1 erlang-nox-25.1-1 rabbitmq-3.10.7-1 libmicrohttpd-0.9.75-1 debuginfod-0.187-2 valgrind-3.19.0-5 xmlstarlet-1.6.1-3 xxhash-0.8.1-2 yaml-cpp-0.7.0-2 yasm-1.3.0-5 python-mock-3.0.5-9 python-nose-1.3.7-14 python-pycodestyle-2.9.1-2 python-dill-0.3.4-3 python-tomlkit-0.11.4-1 python-pylint-2.14.5-1 python-pytest-7.1.3-1 python-pytest-cov-4.0.0-1 ninja-1.11.1-1
[Aur:2] ceph-16.2.7-1 (ceph-libs) onnxruntime-git-orttraining_rc2.r4438.g14365b67a0-1
:: [1mRemove make dependencies after install? [y/N] [0m 2 ceph (ceph-libs) (Installed) (Build Files Exist)
1 onnxruntime-git (Installed) (Build Files Exist)
==> Packages to cleanBuild?
==> [N]one [A]ll [Ab]ort [I]nstalled [No]tInstalled or (1 2 3, 1-3, ^4)
==> :: [1mPKGBUILD up to date, Skipping (2/0): ceph, onnxruntime-git[0m
2 ceph (ceph-libs) (Installed) (Build Files Exist)
1 onnxruntime-git (Installed) (Build Files Exist)
==> Diffs to show?
==> [N]one [A]ll [Ab]ort [I]nstalled [No]tInstalled or (1 2 3, 1-3, ^4)
==> :: [1m(1/2) Parsing SRCINFO: ceph (ceph-libs)[0m
:: [1m(2/2) Parsing SRCINFO: onnxruntime-git[0m
:: Synchronizing package databases...
core downloading...
extra downloading...
community downloading...
resolving dependencies...
looking for conflicting packages...
Packages (129) abseil-cpp-20220623.1-1 boost-1.80.0-2 c-ares-1.18.1-1 coffeescript-2.7.0-1 cpio-2.13-2 crypto++-8.7.0-1 cunit-2.1.3-3 debuginfod-0.187-2 erlang-nox-25.1-1 fcgi-2.4.2-2 gperf-3.1-3 gperftools-2.10-1 gtest-1.12.1-1 inetutils-2.3-1 java-environment-common-3-3 java-hamcrest-1.3-5 java-runtime-common-3-3 jdk-openjdk-18.0.2.1.u0-1 jq-1.6-4 jre-openjdk-18.0.2.1.u0-1 jre-openjdk-headless-18.0.2.1.u0-1 jre11-openjdk-headless-11.0.16.1.u1-2 junit-4.13.2-1 leveldb-1.23-3 libatomic_ops-7.6.14-1 libcurl-compat-7.85.0-2 libmicrohttpd-0.9.75-1 libnet-1:1.1.6-1 librabbitmq-c-0.11.0-1 librdkafka-1.9.2-1 lsb-release-2.0.r48.3cf5103-1 ninja-1.11.1-1 nodejs-18.10.0-1 oniguruma-6.9.8-1 protobuf-21.7-1 python-aniso8601-9.0.1-3 python-apipkg-3.0.1-1 python-astroid-2.12.10-1 python-attrs-22.1.0-1 python-babel-2.10.3-1 python-bcrypt-4.0.0-1 python-beautifulsoup4-4.11.1-1 python-cachetools-5.2.0-1 python-cheroot-8.6.0-2 python-cherrypy-18.8.0-1 python-click-8.1.3-1 python-coverage-6.2-1 python-dateutil-2.8.2-4 python-defusedxml-0.7.1-4 python-dill-0.3.4-3 python-elasticsearch-7.9.0-1 python-filelock-3.8.0-1 python-flask-2.2.2-1 python-flask-restful-0.3.9-3 python-google-api-core-2.10.0-1 python-google-api-python-client-2.60.0-1 python-google-auth-2.3.2-1 python-google-auth-httplib2-0.1.0-3 python-googleapis-common-protos-1.56.4-1 python-grpcio-1.48.0-1 python-httplib2-0.20.4-1 python-imagesize-1.4.1-2 python-iniconfig-1.1.1-5 python-isodate-0.6.1-1 python-isort-5.10.1-5 python-itsdangerous-2.1.2-2 python-jaraco.classes-3.2.3-1 python-jaraco.collections-3.5.1-3 python-jinja-1:3.1.2-2 python-joblib-1.2.0-1 python-lazy-object-proxy-1.7.1-1 python-logutils-0.3.5-10 python-lxml-4.9.1-1 python-mako-1.2.3-1 python-markupsafe-2.1.1-1 python-mccabe-0.7.0-1 python-mock-3.0.5-9 python-nose-1.3.7-14 python-pbr-5.10.0-1 python-pecan-1.4.2-1 python-pkgconfig-1.5.5-3 python-pluggy-1.0.0-1 python-portend-3.1.0-1 python-prettytable-3.4.1-1 python-prometheus_client-0.14.1-1 python-protobuf-21.7-1 python-py-1.11.0-1 python-pyasn1-0.4.8-7 python-pyasn1-modules-0.2.8-6 python-pycodestyle-2.9.1-2 python-pyjwt-2.5.0-1 python-pylint-2.14.5-1 python-pytest-7.1.3-1 python-pytest-cov-4.0.0-1 python-pytz-2022.1-1 python-repoze.lru-0.7-8 python-routes-2.5.1-5 python-rsa-4.9-1 python-scikit-learn-1.1.2-1 python-snowballstemmer-2.2.0-3 python-soupsieve-2.3.2.post1-1 python-sphinx-5.2.3-1 python-sphinx-alabaster-theme-0.7.12-9 python-sphinxcontrib-applehelp-1.0.2-9 python-sphinxcontrib-devhelp-1.0.2-9 python-sphinxcontrib-htmlhelp-2.0.0-5 python-sphinxcontrib-jsmath-1.0.1-12 python-sphinxcontrib-qthelp-1.0.3-9 python-sphinxcontrib-serializinghtml-1.1.5-4 python-tempora-5.0.2-1 python-threadpoolctl-3.1.0-1 python-tomlkit-0.11.4-1 python-uritemplate-4.1.1-1 python-virtualenv-20.16.1-1 python-waitress-2.1.2-1 python-wcwidth-0.2.5-6 python-webob-1.8.7-4 python-webtest-3.0.0-3 python-werkzeug-2.2.2-1 python-wrapt-1.14.1-1 python-xmlsec-1.3.13-1 python-yaml-6.0-1 python-zc.lockfile-2.0-8 rabbitmq-3.10.7-1 valgrind-3.19.0-5 xmlstarlet-1.6.1-3 xxhash-0.8.1-2 yaml-cpp-0.7.0-2 yasm-1.3.0-5
Total Installed Size: 1096.97 MiB
:: Proceed with installation? [Y/n] checking keyring...
checking package integrity...
loading package files...
checking for file conflicts...
error: failed to commit transaction (conflicting files)
python-wcwidth: /usr/lib/python3.10/site-packages/wcwidth/__init__.py exists in filesystem
python-wcwidth: /usr/lib/python3.10/site-packages/wcwidth/__pycache__/__init__.cpython-310.pyc exists in filesystem
python-wcwidth: /usr/lib/python3.10/site-packages/wcwidth/__pycache__/table_wide.cpython-310.pyc exists in filesystem
python-wcwidth: /usr/lib/python3.10/site-packages/wcwidth/__pycache__/table_zero.cpython-310.pyc exists in filesystem
python-wcwidth: /usr/lib/python3.10/site-packages/wcwidth/__pycache__/unicode_versions.cpython-310.pyc exists in filesystem
python-wcwidth: /usr/lib/python3.10/site-packages/wcwidth/__pycache__/wcwidth.cpython-310.pyc exists in filesystem
python-wcwidth: /usr/lib/python3.10/site-packages/wcwidth/table_wide.py exists in filesystem
python-wcwidth: /usr/lib/python3.10/site-packages/wcwidth/table_zero.py exists in filesystem
python-wcwidth: /usr/lib/python3.10/site-packages/wcwidth/unicode_versions.py exists in filesystem
python-wcwidth: /usr/lib/python3.10/site-packages/wcwidth/wcwidth.py exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/_yaml/__init__.py exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/_yaml/__pycache__/__init__.cpython-310.pyc exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/__init__.py exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/__pycache__/__init__.cpython-310.pyc exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/__pycache__/composer.cpython-310.pyc exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/__pycache__/constructor.cpython-310.pyc exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/__pycache__/cyaml.cpython-310.pyc exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/__pycache__/dumper.cpython-310.pyc exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/__pycache__/emitter.cpython-310.pyc exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/__pycache__/error.cpython-310.pyc exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/__pycache__/events.cpython-310.pyc exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/__pycache__/loader.cpython-310.pyc exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/__pycache__/nodes.cpython-310.pyc exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/__pycache__/parser.cpython-310.pyc exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/__pycache__/reader.cpython-310.pyc exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/__pycache__/representer.cpython-310.pyc exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/__pycache__/resolver.cpython-310.pyc exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/__pycache__/scanner.cpython-310.pyc exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/__pycache__/serializer.cpython-310.pyc exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/__pycache__/tokens.cpython-310.pyc exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/_yaml.cpython-310-x86_64-linux-gnu.so exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/composer.py exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/constructor.py exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/cyaml.py exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/dumper.py exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/emitter.py exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/error.py exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/events.py exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/loader.py exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/nodes.py exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/parser.py exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/reader.py exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/representer.py exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/resolver.py exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/scanner.py exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/serializer.py exists in filesystem
python-yaml: /usr/lib/python3.10/site-packages/yaml/tokens.py exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/__init__.py exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/__init__.pyi exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/__pycache__/__init__.cpython-310.pyc exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/__pycache__/_cmp.cpython-310.pyc exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/__pycache__/_compat.cpython-310.pyc exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/__pycache__/_config.cpython-310.pyc exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/__pycache__/_funcs.cpython-310.pyc exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/__pycache__/_make.cpython-310.pyc exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/__pycache__/_next_gen.cpython-310.pyc exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/__pycache__/_version_info.cpython-310.pyc exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/__pycache__/converters.cpython-310.pyc exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/__pycache__/exceptions.cpython-310.pyc exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/__pycache__/filters.cpython-310.pyc exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/__pycache__/setters.cpython-310.pyc exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/__pycache__/validators.cpython-310.pyc exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/_cmp.py exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/_cmp.pyi exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/_compat.py exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/_config.py exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/_funcs.py exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/_make.py exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/_next_gen.py exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/_version_info.py exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/_version_info.pyi exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/converters.py exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/converters.pyi exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/exceptions.py exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/exceptions.pyi exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/filters.py exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/filters.pyi exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/py.typed exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/setters.py exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/setters.pyi exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/validators.py exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attr/validators.pyi exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attrs/__init__.py exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attrs/__init__.pyi exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attrs/__pycache__/__init__.cpython-310.pyc exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attrs/__pycache__/converters.cpython-310.pyc exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attrs/__pycache__/exceptions.cpython-310.pyc exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attrs/__pycache__/filters.cpython-310.pyc exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attrs/__pycache__/setters.cpython-310.pyc exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attrs/__pycache__/validators.cpython-310.pyc exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attrs/converters.py exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attrs/exceptions.py exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attrs/filters.py exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attrs/py.typed exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attrs/setters.py exists in filesystem
python-attrs: /usr/lib/python3.10/site-packages/attrs/validators.py exists in filesystem
python-bcrypt: /usr/lib/python3.10/site-packages/bcrypt/__about__.py exists in filesystem
python-bcrypt: /usr/lib/python3.10/site-packages/bcrypt/__init__.py exists in filesystem
python-bcrypt: /usr/lib/python3.10/site-packages/bcrypt/__pycache__/__about__.cpython-310.pyc exists in filesystem
python-bcrypt: /usr/lib/python3.10/site-packages/bcrypt/__pycache__/__init__.cpython-310.pyc exists in filesystem
python-bcrypt: /usr/lib/python3.10/site-packages/bcrypt/_bcrypt.abi3.so exists in filesystem
python-bcrypt: /usr/lib/python3.10/site-packages/bcrypt/py.typed exists in filesystem
python-pytz: /usr/lib/python3.10/site-packages/pytz/__init__.py exists in filesystem
python-pytz: /usr/lib/python3.10/site-packages/pytz/__pycache__/__init__.cpython-310.pyc exists in filesystem
python-pytz: /usr/lib/python3.10/site-packages/pytz/__pycache__/exceptions.cpython-310.pyc exists in filesystem
python-pytz: /usr/lib/python3.10/site-packages/pytz/__pycache__/lazy.cpython-310.pyc exists in filesystem
python-pytz: /usr/lib/python3.10/site-packages/pytz/__pycache__/reference.cpython-310.pyc exists in filesystem
python-pytz: /usr/lib/python3.10/site-packages/pytz/__pycache__/tzfile.cpython-310.pyc exists in filesystem
python-pytz: /usr/lib/python3.10/site-packages/pytz/__pycache__/tzinfo.cpython-310.pyc exists in filesystem
python-pytz: /usr/lib/python3.10/site-packages/pytz/exceptions.py exists in filesystem
python-pytz: /usr/lib/python3.10/site-packages/pytz/lazy.py exists in filesystem
python-pytz: /usr/lib/python3.10/site-packages/pytz/reference.py exists in filesystem
python-pytz: /usr/lib/python3.10/site-packages/pytz/tzfile.py exists in filesystem
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python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/discovery/windows/__pycache__/pep514.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/discovery/windows/pep514.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/info.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/report.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/run/__init__.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/run/__pycache__/__init__.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/run/__pycache__/session.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/run/plugin/__init__.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/run/plugin/__pycache__/__init__.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/run/plugin/__pycache__/activators.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/run/plugin/__pycache__/base.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/run/plugin/__pycache__/creators.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/run/plugin/__pycache__/discovery.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/run/plugin/__pycache__/seeders.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/run/plugin/activators.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/run/plugin/base.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/run/plugin/creators.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/run/plugin/discovery.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/run/plugin/seeders.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/run/session.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/__init__.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/__pycache__/__init__.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/__pycache__/seeder.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/embed/__init__.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/embed/__pycache__/__init__.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/embed/__pycache__/base_embed.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/embed/__pycache__/pip_invoke.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/embed/base_embed.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/embed/pip_invoke.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/embed/via_app_data/__init__.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/embed/via_app_data/__pycache__/__init__.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/embed/via_app_data/__pycache__/via_app_data.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/embed/via_app_data/pip_install/__init__.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/embed/via_app_data/pip_install/__pycache__/__init__.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/embed/via_app_data/pip_install/__pycache__/base.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/embed/via_app_data/pip_install/__pycache__/copy.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/embed/via_app_data/pip_install/__pycache__/symlink.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/embed/via_app_data/pip_install/base.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/embed/via_app_data/pip_install/copy.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/embed/via_app_data/pip_install/symlink.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/embed/via_app_data/via_app_data.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/seeder.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/wheels/__init__.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/wheels/__pycache__/__init__.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/wheels/__pycache__/acquire.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/wheels/__pycache__/bundle.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/wheels/__pycache__/periodic_update.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/wheels/__pycache__/util.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/wheels/acquire.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/wheels/bundle.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/wheels/embed/__init__.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/wheels/embed/__pycache__/__init__.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/wheels/embed/pip-20.3.4-py2.py3-none-any.whl exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/wheels/embed/pip-21.3.1-py3-none-any.whl exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/wheels/embed/setuptools-44.1.1-py2.py3-none-any.whl exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/wheels/embed/setuptools-50.3.2-py3-none-any.whl exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/wheels/embed/setuptools-59.6.0-py3-none-any.whl exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/wheels/embed/wheel-0.37.1-py2.py3-none-any.whl exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/wheels/periodic_update.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/seed/wheels/util.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/util/__init__.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/util/__pycache__/__init__.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/util/__pycache__/error.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/util/__pycache__/lock.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/util/__pycache__/zipapp.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/util/error.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/util/lock.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/util/path/__init__.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/util/path/__pycache__/__init__.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/util/path/__pycache__/_permission.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/util/path/__pycache__/_sync.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/util/path/__pycache__/_win.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/util/path/_permission.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/util/path/_sync.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/util/path/_win.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/util/subprocess/__init__.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/util/subprocess/__pycache__/__init__.cpython-310.pyc exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/util/zipapp.py exists in filesystem
python-virtualenv: /usr/lib/python3.10/site-packages/virtualenv/version.py exists in filesystem
python-nose: /usr/bin/nosetests exists in filesystem
Errors occurred, no packages were upgraded.
error: target not found: boost
error: target not found: c-ares
error: target not found: nodejs
error: target not found: coffeescript
error: target not found: cpio
error: target not found: crypto++
error: target not found: cunit
error: target not found: fcgi
error: target not found: gtest
error: target not found: gperf
error: target not found: gperftools
error: target not found: inetutils
error: target not found: java-runtime-common
error: target not found: libnet
error: target not found: jre-openjdk-headless
error: target not found: jre-openjdk
error: target not found: oniguruma
error: target not found: jq
error: target not found: jre11-openjdk-headless
error: target not found: java-environment-common
error: target not found: jdk-openjdk
error: target not found: java-hamcrest
error: target not found: junit
error: target not found: leveldb
error: target not found: libatomic_ops
error: target not found: libcurl-compat
error: target not found: librabbitmq-c
error: target not found: lsb-release
error: target not found: protobuf
error: target not found: python-lazy-object-proxy
error: target not found: python-wrapt
error: target not found: python-astroid
error: target not found: python-attrs
error: target not found: python-bcrypt
error: target not found: python-cheroot
error: target not found: python-pytz
error: target not found: python-tempora
error: target not found: python-portend
error: target not found: python-jaraco.classes
error: target not found: python-jaraco.collections
error: target not found: python-zc.lockfile
error: target not found: python-cherrypy
error: target not found: python-coverage
error: target not found: python-dateutil
error: target not found: python-elasticsearch
error: target not found: python-markupsafe
error: target not found: python-werkzeug
error: target not found: python-jinja
error: target not found: python-itsdangerous
error: target not found: python-click
error: target not found: python-flask
error: target not found: python-aniso8601
error: target not found: python-flask-restful
error: target not found: python-cachetools
error: target not found: python-pyasn1
error: target not found: python-pyasn1-modules
error: target not found: python-rsa
error: target not found: python-google-auth
error: target not found: python-httplib2
error: target not found: python-google-auth-httplib2
error: target not found: python-uritemplate
error: target not found: python-protobuf
error: target not found: python-googleapis-common-protos
error: target not found: python-google-api-core
error: target not found: python-google-api-python-client
error: target not found: abseil-cpp
error: target not found: python-grpcio
error: target not found: python-isort
error: target not found: python-mccabe
error: target not found: python-isodate
error: target not found: python-defusedxml
error: target not found: python-pkgconfig
error: target not found: python-lxml
error: target not found: python-xmlsec
error: target not found: python-pbr
error: target not found: python-webob
error: target not found: python-mako
error: target not found: python-soupsieve
error: target not found: python-beautifulsoup4
error: target not found: python-waitress
error: target not found: python-webtest
error: target not found: python-logutils
error: target not found: python-pecan
error: target not found: python-pluggy
error: target not found: python-prometheus_client
error: target not found: python-iniconfig
error: target not found: python-apipkg
error: target not found: python-py
error: target not found: python-pyjwt
error: target not found: python-repoze.lru
error: target not found: python-routes
error: target not found: python-joblib
error: target not found: python-threadpoolctl
error: target not found: python-scikit-learn
error: target not found: python-babel
error: target not found: python-imagesize
error: target not found: python-snowballstemmer
error: target not found: python-sphinx-alabaster-theme
error: target not found: python-sphinxcontrib-applehelp
error: target not found: python-sphinxcontrib-devhelp
error: target not found: python-sphinxcontrib-htmlhelp
error: target not found: python-sphinxcontrib-jsmath
error: target not found: python-sphinxcontrib-qthelp
error: target not found: python-sphinxcontrib-serializinghtml
error: target not found: python-sphinx
error: target not found: python-filelock
error: target not found: python-virtualenv
error: target not found: erlang-nox
error: target not found: rabbitmq
error: target not found: libmicrohttpd
error: target not found: debuginfod
error: target not found: valgrind
error: target not found: xmlstarlet
error: target not found: xxhash
error: target not found: yaml-cpp
error: target not found: yasm
error: target not found: python-mock
error: target not found: python-nose
error: target not found: python-pycodestyle
error: target not found: python-dill
error: target not found: python-tomlkit
error: target not found: python-pylint
error: target not found: python-pytest
error: target not found: python-pytest-cov
error: target not found: ninja
-> error installing repo packagesOffline
#2 2022-10-10 00:43:15
- jasonwryan
- Anarchist
- From: .nz
- Registered: 2009-05-09
- Posts: 30,424
- Website
Re: Unable to upgrade due to conflicting files
1. pacman is your package manager.
Offline
#3 2022-10-10 00:46:01
- Trilby
- Inspector Parrot
- Registered: 2011-11-29
- Posts: 30,324
- Website
Re: Unable to upgrade due to conflicting files
First, your upgrade of all repo packages went fine - your issues is A) that an AUR package is failing to install due to conflicts in dependencies, and B) you are using a tool that is preventing you from understanding what is happening.
To solve A, read this then check for any comments / issues on that AUR package's page. To solve B, stop using yay.
Last edited by Trilby (2022-10-10 00:47:02)
"UNIX is simple and coherent" - Dennis Ritchie; "GNU's Not Unix" - Richard Stallman
Online
#4 2022-10-10 14:04:33
- slimprize
- Member
- Registered: 2022-02-13
- Posts: 12
Re: Unable to upgrade due to conflicting files
Hi @Trilby,
Many thanks for your solution. I tried using
pacman -Syu and everything did indeed work.
I have been looking at the yay output and am trying to determine which package has the problem. It looks like a whole list of them do.
@ Jason, yes, I knew about pacman but unfortunately I was told that yay was superior or at least I got that impression.
Offline
#5 2022-10-10 14:49:47
- jasonwryan
- Anarchist
- From: .nz
- Registered: 2009-05-09
- Posts: 30,424
- Website
Re: Unable to upgrade due to conflicting files
slimprize wrote:
@ Jason, yes, I knew about pacman but unfortunately I was told that yay was superior or at least I got that impression.
Whoever told you that is an idiot.
Offline
#6 2022-10-10 15:03:43
- loqs
- Member
- Registered: 2014-03-06
- Posts: 17,975
Re: Unable to upgrade due to conflicting files
ceph-libs is probably the package that yay was going to build. Do you need it or since it was dropped to AUR can you remove it and any packages depending on it?
Even if you remove ceph-libs you want to clean up the untracked files in /usr/lib/python3.10/site-packages/ and stop the activity that is creating them.
Offline
#7 2022-10-10 15:04:14
- Trilby
- Inspector Parrot
- Registered: 2011-11-29
- Posts: 30,324
- Website
Re: Unable to upgrade due to conflicting files
slimprize wrote:
I have been looking at the yay output and am trying to determine which package has the problem. It looks like a whole list of them do.
Yes and no - but this confusion is one of many reasons why yay is not well suited for these tasks. The aur package that ultimately leads to the errors is ceph-libs. If you do not need that package, you could remove it - though that'd actually only brush the issue under the rug. Yay is attempting to update ceph-libs, and in order to do so it needs to install dependencies including several python packages which it does behind the scenes by calling pacman to install these from the main repos. And several of these python packages result in the conflicting files warnings.
The most likely cause of this is due to previously installing python packages as root with `pip`. The solution would be to remove any / all pip-installed packages.
"UNIX is simple and coherent" - Dennis Ritchie; "GNU's Not Unix" - Richard Stallman
Online