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#1 Yesterday 20:27:56

korimitsu
Member
Registered: 2016-08-14
Posts: 139

Help fixing packages issues

I have these issues with my packages, how can I fix them?

# pacman -Qkk | grep -E "missing|warning"
warning: ghc-libs: /usr/lib/ghc-9.2.8/lib/package.conf.d/package.cache (Modification time mismatch)
warning: ghc-libs: /usr/lib/ghc-9.2.8/lib/package.conf.d/package.cache (Size mismatch)
warning: ghc-libs: /usr/lib/ghc-9.2.8/lib/package.conf.d/package.cache (SHA256 checksum mismatch)
warning: intel-ucode: /boot/intel-ucode.img (Permissions mismatch)
warning: java-runtime-common: /usr/lib/jvm/default (Symlink path mismatch)
warning: java-runtime-common: /usr/lib/jvm/default (Modification time mismatch)
warning: java-runtime-common: /usr/lib/jvm/default-runtime (Symlink path mismatch)
warning: java-runtime-common: /usr/lib/jvm/default-runtime (Modification time mismatch)
warning: libutempter: /usr/lib/utempter/utempter (GID mismatch)
warning: libutempter: /usr/lib/utempter/utempter (Permissions mismatch)
warning: nodejs-nopt: /usr/bin/nopt (Permissions mismatch)
warning: shadow: /usr/bin/groupmems (GID mismatch)
warning: shadow: /usr/bin/groupmems (Permissions mismatch)
warning: systemd: /var/log/journal (GID mismatch)
warning: vlc: /usr/lib/vlc/plugins/plugins.dat (Modification time mismatch)
warning: vlc: /usr/lib/vlc/plugins/plugins.dat (Size mismatch)
warning: vlc: /usr/lib/vlc/plugins/plugins.dat (SHA256 checksum mismatch)

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#2 Yesterday 20:31:39

Scimmia
Fellow
Registered: 2012-09-01
Posts: 12,107

Re: Help fixing packages issues

I don't see anything there that's a problem. Maybe the permissions mismatch on nodejs-nopt, what permissions are you seeing there?

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#3 Yesterday 20:32:53

loqs
Member
Registered: 2014-03-06
Posts: 18,067

Re: Help fixing packages issues

Are the changes not all expected due to the files being adjusted in post install scripts or by cache update scripts being run?

Last edited by loqs (Yesterday 20:33:59)

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#4 Yesterday 21:59:48

korimitsu
Member
Registered: 2016-08-14
Posts: 139

Re: Help fixing packages issues

I've removed all affected packages except java with "sudo pacman -Rdd" and reinstalled still getting the errors:

$ # pacman -Qkk | grep -E "missing|warning"
warning: intel-ucode: /boot/intel-ucode.img (Permissions mismatch)
warning: java-runtime-common: /usr/lib/jvm/default (Symlink path mismatch)
warning: java-runtime-common: /usr/lib/jvm/default (Modification time mismatch)
warning: java-runtime-common: /usr/lib/jvm/default-runtime (Symlink path mismatch)
warning: java-runtime-common: /usr/lib/jvm/default-runtime (Modification time mismatch)
warning: libutempter: /usr/lib/utempter/utempter (GID mismatch)
warning: libutempter: /usr/lib/utempter/utempter (Permissions mismatch)
warning: nodejs-nopt: /usr/bin/nopt (Permissions mismatch)
warning: shadow: /usr/bin/groupmems (GID mismatch)
warning: shadow: /usr/bin/groupmems (Permissions mismatch)
warning: systemd: /var/log/journal (GID mismatch)
warning: vlc: /usr/lib/vlc/plugins/plugins.dat (Modification time mismatch)
warning: vlc: /usr/lib/vlc/plugins/plugins.dat (Size mismatch)
warning: vlc: /usr/lib/vlc/plugins/plugins.dat (SHA256 checksum mismatch)
# stat /usr/bin/nopt
  File: /usr/bin/nopt -> ../lib/node_modules/nopt/bin/nopt.js
  Size: 36              Blocks: 0          IO Block: 4096   symbolic link
Device: 254,0   Inode: 60962263    Links: 1
Access: (0777/lrwxrwxrwx)  Uid: (    0/    root)   Gid: (    0/    root)
# stat /var/log/journal 
  File: /var/log/journal
  Size: 4096            Blocks: 16         IO Block: 4096   directory
Device: 254,0   Inode: 32899833    Links: 4
Access: (2755/drwxr-sr-x)  Uid: (    0/    root)   Gid: (  983/systemd-journal)
 stat /usr/lib/utempter/utempter
  File: /usr/lib/utempter/utempter
  Size: 14280           Blocks: 32         IO Block: 4096   regular file
Device: 254,0   Inode: 62278109    Links: 1
Access: (2755/-rwxr-sr-x)  Uid: (    0/    root)   Gid: (  997/    utmp)
# stat /boot/intel-ucode.img
  File: /boot/intel-ucode.img
  Size: 8139776         Blocks: 15904      IO Block: 4096   regular file
Device: 8,17    Inode: 14          Links: 1
Access: (0755/-rwxr-xr-x)  Uid: (    0/    root)   Gid: (    0/    root)
# stat /usr/bin/groupmems
  File: /usr/bin/groupmems
  Size: 43120           Blocks: 88         IO Block: 4096   regular file
Device: 254,0   Inode: 60962547    Links: 1
Access: (2750/-rwxr-s---)  Uid: (    0/    root)   Gid: (  958/  groups)

Last edited by korimitsu (Yesterday 22:01:22)

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#5 Yesterday 22:23:44

loqs
Member
Registered: 2014-03-06
Posts: 18,067

Re: Help fixing packages issues

You do not distinguish between errors and warnings? You do not accept the explanation that the warnings you posted are all expected modifications?
Edit:

# stat /usr/bin/nopt
  File: /usr/bin/nopt -> ../lib/node_modules/nopt/bin/nopt.js
  Size: 36              Blocks: 0          IO Block: 4096   symbolic link
Device: 254,0   Inode: 60962263    Links: 1
Access: (0777/lrwxrwxrwx)  Uid: (    0/    root)   Gid: (    0/    root)
$ bsdtar -tvf /var/cache/pacman/cache/nodejs-nopt-7.2.1-1-any.pkg.tar.zst 
....
lrwxr-xr-x  0 root   root        0 Nov 29 12:48 usr/bin/nopt -> ../lib/node_modules/nopt/bin/nopt.js

symlinks do not have file modes. Possibly a pacman issue?

# stat /var/log/journal 
  File: /var/log/journal
  Size: 4096            Blocks: 16         IO Block: 4096   directory
Device: 254,0   Inode: 32899833    Links: 4
Access: (2755/drwxr-sr-x)  Uid: (    0/    root)   Gid: (  983/systemd-journal)
cat /usr/lib/tmpfiles.d/systemd.con
....
z /var/log/journal 2755 root systemd-journal - -
 stat /usr/lib/utempter/utempter
  File: /usr/lib/utempter/utempter
  Size: 14280           Blocks: 32         IO Block: 4096   regular file
Device: 254,0   Inode: 62278109    Links: 1
Access: (2755/-rwxr-sr-x)  Uid: (    0/    root)   Gid: (  997/    utmp)

https://gitlab.archlinux.org/archlinux/ … 1c49f7336e

# stat /boot/intel-ucode.img
  File: /boot/intel-ucode.img
  Size: 8139776         Blocks: 15904      IO Block: 4096   regular file
Device: 8,17    Inode: 14          Links: 1
Access: (0755/-rwxr-xr-x)  Uid: (    0/    root)   Gid: (    0/    root)

/boot is vfat?

# stat /usr/bin/groupmems
  File: /usr/bin/groupmems
  Size: 43120           Blocks: 88         IO Block: 4096   regular file
Device: 254,0   Inode: 60962547    Links: 1
Access: (2750/-rwxr-s---)  Uid: (    0/    root)   Gid: (  958/  groups)

https://gitlab.archlinux.org/archlinux/ … -/issues/2

Last edited by loqs (Today 00:05:51)

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