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#1 2017-06-06 21:01:11

mipe
Member
Registered: 2017-06-06
Posts: 3

pacman -Syu failing after long pause of updates

I haven't used my arch system in a while and tried to update. Got the following error:

pacman -Syu
:: Synchronizing package databases...
 core is up to date
 extra                                                             1667.3 KiB  2.12M/s 00:01 [######################################################] 100%
 community                                                            3.8 MiB  4.23M/s 00:01 [######################################################] 100%
 multilib is up to date
:: Starting full system upgrade...
:: Replace lib32-nvidia-340xx-libgl with multilib/lib32-nvidia-340xx-utils? [Y/n] Y
:: Replace nvidia-340xx-libgl with extra/nvidia-340xx-utils? [Y/n] Y
resolving dependencies...
looking for conflicting packages...
warning: dependency cycle detected:
warning: freetype2 will be installed before its harfbuzz dependency
warning: dependency cycle detected:
warning: mesa will be installed before its libglvnd dependency
warning: dependency cycle detected:
warning: xorg-server will be installed before its nvidia-340xx-utils dependency
warning: dependency cycle detected:
warning: lib32-harfbuzz will be installed before its lib32-freetype2 dependency
warning: dependency cycle detected:
warning: lib32-libglvnd will be installed before its lib32-mesa dependency

Packages (465) accountsservice-0.6.45-1  adwaita-icon-theme-3.24.0-1  alsa-lib-1.1.4.1-1  alsa-plugins-1.1.4-1  apache-2.4.25-3  apr-1.5.2-2
               apr-util-1.5.4-3  archlinux-keyring-20170320-1  at-spi2-atk-2.24.1-1  at-spi2-core-2.24.1-1  atk-2.24.0-2  atkmm-2.24.2+1+gf30b47f-2
               babl-0.1.24-1  baobab-3.24.0+1+g202d168-1  bash-4.4.012-2  binutils-2.28.0-3  blas-3.7.0-2  bluez-5.45-1  bluez-libs-5.45-1
               boost-1.64.0-1  boost-libs-1.64.0-1  bzip2-1.0.6-6  ca-certificates-20170307-1  ca-certificates-mozilla-3.30.2-1
               ca-certificates-utils-20170307-1  cairomm-1.12.2-2  cheese-3.24.0-1  chromaprint-1.4.2-1  chromium-59.0.3071.86-1  cifs-utils-6.7-2
               clutter-1.26.2-1  clutter-gst-3.0.24-1  cmake-3.8.2-1  cogl-1.22.2+10+g3baa2d7a-1  colord-1.3.5-1  coreutils-8.27-1  cryptsetup-1.7.5-1
               curl-7.54.0-3  dbus-1.10.18-1  dconf-0.26.0+1+g701d19d-1  device-mapper-2.02.171-1  dialog-1:1.3_20170509-1  diffutils-3.6-1
               dmidecode-3.1-1  dnssec-anchors-20170228-1  eclipse-common-4.6.3-1  eclipse-java-4.6.3-1  elfutils-0.169-1
               empathy-3.12.12+120+g4a4b45b94-1  enchant-1.6.1-2  eog-3.24.1-1  epiphany-3.24.2-1  evince-3.24.0+8+ga8363215-1
               evolution-data-server-3.24.2-1  exempi-2.4.2+1+gc26d5be-1  ffmpeg-1:3.3.1-9  ffmpeg2.8-2.8.11-9  fftw-3.3.6-2  file-5.31-1
               file-roller-3.24.1-1  filesystem-2017.03-2  firefox-53.0.3-1  fixesproto-5.0+9+g4292ec1-1  flashplugin-25.0.0.171-1  flex-2.6.4-1
               folks-0.11.3+43+g780d64a9-1  fontconfig-2.12.3-1  freetype2-2.8-2  frei0r-plugins-1.6.1-1  fuse-common-3.0.2-1  gcc-libs-multilib-7.1.1-3
               gcc-multilib-7.1.1-3  gconfmm-2.28.3-4  gcr-3.20.0+45+g4708f35-1  gd-2.2.4-2  gdbm-1.13-1  gdk-pixbuf2-2.36.6-2  gdm-3.24.2-1
               gedit-3.22.0+44+ge706c1259-1  geoclue2-2.4.7-1  geocode-glib-3.23.90-1  ghostscript-9.21-2  gimp-2.8.20-1  git-2.13.0-2  gjs-1.48.3-1
               glib-networking-2.50.0-2  glib2-2.52.2+1+gb8bd46bc8-1  glibc-2.25-2  glibmm-2.51.7-1  gmime-2.6.23+4+g91dcee38-1  gnome-autoar-0.2.2-1
               gnome-backgrounds-3.24.0+2+g755b6f9-1  gnome-bluetooth-3.20.1+1+ge902d1a-1  gnome-calculator-3.24.0+2+g0ca2919b-1
               gnome-color-manager-3.24.0+4+ge78025a-1  gnome-control-center-3.24.2-1  gnome-desktop-1:3.24.2-1  gnome-dictionary-3.24.0+5+ga7aa054-1
               gnome-disk-utility-3.24.1-1  gnome-doc-utils-0.20.10+16+gc03cc09-1  gnome-font-viewer-3.24.0-1  gnome-keyring-1:3.20.0+57+g9db67ef6-1
               gnome-menus-3.13.3+27+g69656ff-1  gnome-online-accounts-3.24.1-1  gnome-screenshot-3.22.0+42+g8472361-1  gnome-session-3.24.1-1
               gnome-settings-daemon-3.24.2-1  gnome-shell-3.24.2-1  gnome-shell-extensions-3.24.2-1  gnome-system-log-3.9.90+156+g6e29f03-1
               gnome-system-monitor-3.24.0+4+g9140c85a-1  gnome-terminal-3.24.2-1  gnome-themes-standard-3.22.3-1  gnome-tweak-tool-3.24.0+3+g01bffca-1
               gnome-user-docs-3.24.2-1  gnupg-2.1.21-1  gnutls-3.5.12-1  gobject-introspection-1.52.1-1  gobject-introspection-runtime-1.52.1-1
               gpgme-1.9.0-3  gradle-3.5-1  gradle-doc-3.5-1  gradle-src-3.5-1  graphene-1.6.0-1  graphite-1:1.3.10-1  grilo-0.3.3+3+g3104a34-1
               grilo-plugins-0.3.4+13+gf460a00-1  grub-2:2.02-1  gsettings-desktop-schemas-3.24.0-1  gspell-1.4.1-1  gst-plugins-bad-1.12.0-1
               gst-plugins-base-1.12.0-1  gst-plugins-base-libs-1.12.0-1  gst-plugins-good-1.12.0-1  gstreamer-1.12.0-1  gtk-update-icon-cache-3.22.15-1
               gtk3-3.22.15-1  gtk3-print-backends-3.22.15-1  gtkmm3-3.22.0-2  gtksourceview3-3.24.2-1  gucharmap-9.0.4-1  guile-2.2.2-1  gvfs-1.32.1-1
               harfbuzz-1.4.6-1  harfbuzz-icu-1.4.6-1  hunspell-1.6.1-1  hwids-20170328-1  iana-etc-20170512-1  icu-59.1-1  imagemagick-6.9.8.9-1
               imlib2-1.4.10-1  inkscape-0.92.1-2  intel-tbb-2017_20170412-1  intellij-idea-community-edition-2:2017.1.3-1  iproute2-4.11.0-1
               iptables-1.6.1-1  iputils-20161105.1f2bb12-2  jansson-2.10-1  jasper-2.0.13-1  jdk7-openjdk-7.u131_2.6.9-1  jedit-5.4.0-3
               jre7-openjdk-7.u131_2.6.9-1  jre7-openjdk-headless-7.u131_2.6.9-1  js38-38.8.0-3  json-glib-1.2.8-1  keyutils-1.5.10-1  kmod-24-1
               krb5-1.15.1-1  ladspa-1.13-6  lapack-3.7.0-2  ldns-1.7.0-3  lib32-alsa-lib-1.1.4-1  lib32-alsa-plugins-1.1.4-1  lib32-curl-7.54.0-1
               lib32-dbus-1.10.18-1  lib32-e2fsprogs-1.43.4-1  lib32-flac-1.3.2-1  lib32-fontconfig-2.12.3-1  lib32-freetype2-2.8-2
               lib32-gcc-libs-7.1.1-3  lib32-glibc-2.25-3  lib32-harfbuzz-1.4.1-2  lib32-icu-59.1-1  lib32-krb5-1.15.1-1  lib32-libdrm-2.4.81-1
               lib32-libglvnd-0.2.999+g4ba53457-2  lib32-libldap-2.4.44-2  lib32-libpciaccess-0.13.5-1  lib32-libpng-1.6.29-1  lib32-libpsl-0.17.0-2
               lib32-libsndfile-1.0.28-1  lib32-libssh2-1.8.0-2  lib32-libx11-1.6.5-1  lib32-llvm-libs-4.0.0-1  lib32-lm_sensors-3.4.0-1
               lib32-mesa-17.1.1-1  lib32-nvidia-340xx-libgl-340.101-1 [removal]  lib32-nvidia-340xx-utils-340.102-3  lib32-openssl-1:1.1.0.f-1
               lib32-sqlite-3.18.0-1  lib32-util-linux-2.29.2-1  lib32-v4l-utils-1.12.5-1  lib32-wayland-1.13.0-1  libarchive-3.3.1-5  libass-0.13.7-1
               libatomic_ops-7.4.6-1  libbluray-1.0.0-1  libbsd-0.8.3-2  libcanberra-0.30+2+gc0620e4-1  libcanberra-pulse-0.30+2+gc0620e4-1
               libcdio-paranoia-10.2+0.94+1-2  libcdr-0.1.3-3  libchamplain-0.12.15-1  libcmis-0.5.1-6  libcroco-0.6.12+4+g9ad7287-1  libcups-2.2.3-1
               libdatrie-0.2.10-2  libdc1394-2.2.5-1  libdmapsharing-2.9.37+1+ge9fe3e0-1  libdrm-2.4.81-1  libe-book-0.1.2-7  libebml-1.3.4-2
               libedit-20170329_3.1-1  libelf-0.169-1  libepoxy-1.4.2-1  libevdev-1.5.7-1  libevent-2.0.22-4  libfbclient-2.5.7.27050-2
               libfdk-aac-0.1.5-1  libgcrypt-1.7.7-1  libgdata-0.17.8-1  libgdm-3.24.2-1  libgee-0.20.0-1  libglvnd-0.2.999+g4ba53457-2
               libgpg-error-1.27-1  libgrss-0.7.0+16+g971c421-1  libgsf-1.14.41+3+gc7b4b53-1  libgtop-2.36.0-1  libgudev-231+1+g0841288-1
               libgusb-0.2.10-1  libgweather-3.24.1+1+g9b08eea-1  libgxps-0.2.5+1+g764ae1e-1  libibus-1.5.16-1  libimobiledevice-1.2.0-6
               libinput-1.7.2-1  libixion-0.12.2-2  libldap-2.4.44-5  libmatroska-1.4.7-1  libmediaart-1.9.1-1  libmm-glib-1.6.6-1  libmspub-0.1.2-7
               libmwaw-0.3.11-1  libnautilus-extension-3.24.1-1  libnewt-0.52.20-1  libnghttp2-1.22.0-1  libnice-0.1.14-1  libnm-1.8.0-1
               libnm-glib-1.8.0-1  liboauth-1.0.3+9+g11e9461-2  liborcus-0.12.1-2  libpcap-1.8.1-2  libpciaccess-0.13.5-1  libphonenumber-8.5.0-1
               libplist-2.0.0-1  libpng-1.6.29-1  libproxy-0.4.15-2  libpsl-0.17.0-2  libpulse-10.0-3  libreoffice-fresh-5.3.3-2  librsvg-2:2.40.17-1
               libsasl-2.1.26-11  libseccomp-2.3.2-1  libsecret-0.18.5+14+g9980655-1  libshout-1:2.4.1-3  libsigsegv-2.11-1  libsndfile-1.0.28-1
               libsodium-1.0.12-1  libsoup-2.58.1-1  libssh-0.7.5-1  libssh2-1.8.0-2  libsynctex-2016.41290-12  libtasn1-4.12-1  libtiff-4.0.8-1
               libtirpc-1.0.1-3  libtool-2.4.6-8  libtracker-sparql-1.12.0+1+g922c213a5-2  libunwind-1.2-1  libupnp-1.6.21-1  libusbmuxd-1.0.10-2
               libutil-linux-2.29.2-2  libuv-1.12.0-1  libva-1.8.2-1  libvisio-0.1.5-4  libvoikko-4.1-1  libwacom-0.24-1  libwbclient-4.6.4-2
               libwebp-0.6.0-1  libwps-0.4.6-1  libx11-1.6.5-1  libx264-2:148.20170519-1  libxml2-2.9.4+16+g07418011-2  libxslt-1.1.29+42+gac341cbd-1
               libzmf-0.0.1-2  licenses-20140629-2  linux-4.11.3-1  linux-api-headers-4.10.1-1  linux-firmware-20170422.ade8332-1  linux-headers-4.11.3-1
               llvm-libs-4.0.0-3  lm_sensors-3.4.0-2  logrotate-3.12.2-1  lpsolve-5.5.2.5-2  lvm2-2.02.171-1  lzo-2.10-1  make-4.2.1-2  man-pages-4.11-1
               maven-3.5.0-1  mdadm-4.0-1  mesa-17.1.1-1  mkinitcpio-23-1  mobile-broadband-provider-info-20170310-1  mutter-3.24.2+18+g0f7c3f367-1
               nano-2.8.4-1  nautilus-3.24.1-1  nautilus-sendto-3.8.4+41+gf790d15-1  ncurses-6.0+20170527-1  neon-0.30.2-2
               network-manager-applet-1.8.0-1  networkmanager-1.8.0-1  nm-connection-editor-1.8.0-1  npth-1.4-1  nspr-4.14-1  nss-3.30.2-1
               nvidia-340xx-340.102-7  nvidia-340xx-libgl-340.101-2 [removal]  nvidia-340xx-utils-340.102-8  ocl-icd-2.2.11-1  opencore-amr-0.1.5-1
               opencv-3.2.0-3  openresolv-3.9.0-1  openssh-7.5p1-2  openssl-1.0-1.0.2.l-1  opus-1.1.5-1  orc-0.4.26+2+g249c709-1  osinfo-db-20170423-1
               p11-kit-0.23.5-1  pacman-5.0.1-5  pacman-mirrorlist-20170427-1  pango-1.40.6+9+g92cc73c8-1  pangomm-2.40.1-2
               pangox-compat-0.0.2+2+gedb9e09-2  pciutils-3.5.4-1  pcre2-10.23-1  pcsclite-1.8.21-1  perl-5.26.0-1  perl-error-0.17024-2
               perl-file-basedir-0.07-2  perl-file-which-1.21-2  perl-ipc-system-simple-1.25-2  perl-xml-parser-2.44-4  pkg-config-0.29.2-1  pkgfile-17-1
               poppler-0.55.0-3  poppler-glib-0.55.0-3  poppler-qt5-0.55.0-3  potrace-1.14-1  powertop-2.9-1  protobuf-3.3.1-1  pulseaudio-10.0-3
               pulseaudio-bluetooth-10.0-3  pygobject-devel-3.24.1-1  python-3.6.1-1  python-appdirs-1.4.3-1  python-atspi-2.24.0-1
               python-gobject-3.24.1-1  python-markupsafe-1.0-1  python-pyparsing-2.2.0-1  python-setuptools-1:36.0.1-2  python2-2.7.13-2
               python2-appdirs-1.4.3-1  python2-atspi-2.24.0-1  python2-cairo-1.13.3-1  python2-gobject-3.24.1-1  python2-markupsafe-1.0-1
               python2-pyparsing-2.2.0-1  python2-setuptools-1:36.0.1-2  qgit-2.7-2  qt4-4.8.7-20  qt5-base-5.8.0-12  qt5-declarative-5.8.0-2
               qt5-webkit-5.8.0-3  raptor-2.0.15-6  rarian-0.8.1-6  re2-20170501-1  redland-1:1.0.17-4  rtmpdump-1:2.4.r96.fa8646d-3  s-nail-14.8.16-2
               scala-2.12.2-1  sdl-1.2.15-8  sdl_image-1.2.12-4  serf-1.3.9-2  smbclient-4.6.4-2  snappy-1.1.4-1  speech-dispatcher-0.8.7-1
               sqlite-3.19.2-2  startup-notification-0.12-5  subversion-1.9.5-3  sudo-1.8.20.p2-1  sushi-3.24.0-1  t1lib-5.1.2-6  talloc-2.1.9-1
               texinfo-6.3-2  texlive-bibtexextra-2016.43765-1  texlive-bin-2016.41290-12  texlive-core-2016.43757-1  texlive-fontsextra-2016.43763-1
               texlive-games-2016.43415-1  texlive-genericextra-2016.43605-1  texlive-htmlxml-2016.43769-1  texlive-humanities-2016.43711-1
               texlive-latexextra-2016.43768-1  texlive-music-2016.43375-1  texlive-pictures-2016.43767-1  texlive-plainextra-2016.43137-1
               texlive-pstricks-2016.43710-1  texlive-publishers-2016.43764-1  texlive-science-2016.43747-1  texstudio-2.12.4-3  totem-3.24.0-1
               totem-plparser-3.10.7+40+g3859685-1  tracker-1.12.0+1+g922c213a5-2  tslib-1.11-1  tzdata-2017b-1  udisks2-2.6.5-1  util-linux-2.29.2-2
               v4l-utils-1.12.5-1  vino-3.22.0+3+g67773d0-1  vlc-2.2.6-1  vpnc-0.5.3.svn550-2  vte-common-0.48.3-1  vte3-0.48.3-1
               vulkan-icd-loader-1.0.46.0-1  wayland-1.13.0-1  webkit2gtk-2.16.3-1  webkitgtk-2.4.11-6  webkitgtk2-2.4.11-6  whois-5.2.15-1
               wildmidi-0.4.1-1  wpa_supplicant-1:2.6-5  x265-2.4-1  xdg-user-dirs-gtk-0.10+9+g5b7efc6-1  xdg-utils-1.1.2-1  xf86-input-libinput-0.25.1-1
               xfsprogs-4.11.0-1  xine-lib-1.2.8-2  xkeyboard-config-2.21-1  xorg-mkfontdir-1.0.7-8  xorg-server-1.19.3-2  xorg-server-common-1.19.3-2
               xorg-server-xwayland-1.19.3-2  xorg-xkbcomp-1.4.0-1  zeitgeist-1.0+1+g1bcc8585-1  zenity-3.24.0-1  zeromq-4.2.1-1  zziplib-0.13.66-2

Total Download Size:     53.98 MiB
Total Installed Size:  7076.71 MiB
Net Upgrade Size:       362.86 MiB

:: Proceed with installation? [Y/n] Y
:: Retrieving packages...
 chromium-59.0.3071.86-1-x86_64                                      54.0 MiB  5.31M/s 00:10 [######################################################] 100%
(463/463) checking keys in keyring                                                           [######################################################] 100%
(463/463) checking package integrity                                                         [######################################################] 100%
(463/463) loading package files                                                              [######################################################] 100%
(463/463) checking for file conflicts                                                        [######################################################] 100%
error: failed to commit transaction (conflicting files)
ca-certificates-utils: /etc/ssl/certs/ca-certificates.crt exists in filesystem
openssl-1.0: /usr/lib/libcrypto.so.1.0.0 exists in filesystem
openssl-1.0: /usr/lib/libssl.so.1.0.0 exists in filesystem
Errors occurred, no packages were upgraded.

Any hints what I could do?

Last edited by mipe (2017-06-06 21:12:07)

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#2 2017-06-06 21:02:11

jasonwryan
Anarchist
From: .nz
Registered: 2009-05-09
Posts: 30,424
Website

Re: pacman -Syu failing after long pause of updates

Don't post selectively truncated logs; they are worse than useless. Either paste the entire output, or don't bother: https://bbs.archlinux.org/viewtopic.php?id=57855


Arch + dwm   •   Mercurial repos  •   Surfraw

Registered Linux User #482438

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#3 2017-06-06 21:05:31

olegabrielz
Member
From: Norway
Registered: 2015-12-23
Posts: 255

Re: pacman -Syu failing after long pause of updates

Yes. Upgrade more often. And search before posting:
https://www.archlinux.org/news/ca-certi … ervention/


Be aware of my Newbie Powers

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#4 2017-06-06 21:21:42

mipe
Member
Registered: 2017-06-06
Posts: 3

Re: pacman -Syu failing after long pause of updates

olegabrielz wrote:

Yes. Upgrade more often. And search before posting:
https://www.archlinux.org/news/ca-certi … ervention/

Thanks, that got rid of one error, still having problems with libcrypto and libssl:

openssl-1.0: /usr/lib/libcrypto.so.1.0.0 exists in filesystem
openssl-1.0: /usr/lib/libssl.so.1.0.0 exists in filesystem

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#5 2017-06-06 21:23:39

Scimmia
Fellow
Registered: 2012-09-01
Posts: 11,553

Re: pacman -Syu failing after long pause of updates

Why isn't openssl in the list? Are you ignoring it?

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#6 2017-06-06 21:39:26

mipe
Member
Registered: 2017-06-06
Posts: 3

Re: pacman -Syu failing after long pause of updates

Scimmia wrote:

Why isn't openssl in the list? Are you ignoring it?

I tried selectively updating openssl before but that broke pacman completely. Had to downgrade it manually again and now pacman ignores it. How can I force pacman to include it again?

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#7 2017-06-06 21:46:44

Scimmia
Fellow
Registered: 2012-09-01
Posts: 11,553

Re: pacman -Syu failing after long pause of updates

"Manually", as in just extracted it into the filesystem? Not a good idea, now things get complicated.

Extract the old openssl package somewhere else, delete the offending files in /usr/lib, then set LD_LIBRARY_PATH to where the old libs are and run pacman. You'll want to reinstall the openssl package at the same time as you update to overwrite anything you that you overwrote when extracting. Even then, I would run lostfiles from the AUR to find anything left behind untracked.

Partial updates screw things up.

Last edited by Scimmia (2017-06-06 22:34:58)

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